RLG00000022784

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0008182
Physical Location & Seq
Forward (+)
12163286 .. 12163883
598 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022784

Sequence Viewer

Length: 381 bp
ATGCTGGGAAAGCCCATATTGCTGGACCAGGTTTTGGTCGGCATCACAACAGCAAAGGGTTTGAAAATTGCTGTTCCATTTCCCATCATCTCGACTGAGGTTTCATCGAAATCATTGGAACTGTTTCCTACCTCGGTAGGGATTGGTAAGGAGGCTGCTAGGGTGGAGTTCTCCTCCCTTCAAGTGGTGCCAGTTGGAAGGAAAAGAAAAGCTGCGACCAGTTTGGATCAATTTGACCTGCAATCATTTGATGCTACAACTGGTAGTAAGCTCGATACTGTGCAGATGGAAGAGGGTGAGGCAGGTCAGATGGTGATGCCTTCTGAAGCAGAGGGACAGGTGGAAGGTGATGCATCACCTTCTATAGCTAGTTTAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

13.22

Weight (kDa)

4.62

Isoelectric Point (pI)

39.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 246, 293
AccB1I GGYRCC 1 cut(s) 187
AccB7I CCANNNNNTGG 1 cut(s) 34
AclWI GGATC 1 cut(s) 234
AcuI CTGAAG 1 cut(s) 345
AfiI CCNNNNNNNGG 3 cut(s) 34, 138, 184
AgsI TTSAA 2 cut(s) 64, 182
AjnI CCWGG 1 cut(s) 27
AluBI AGCT 3 cut(s) 212, 271, 368
AluI AGCT 3 cut(s) 212, 271, 368
AlwI GGATC 1 cut(s) 234
ApeKI GCWGC 2 cut(s) 155, 212
Asp700I GAANNNNTTC 1 cut(s) 123
AspS9I GGNCC 1 cut(s) 25
AsuHPI GGTGA 4 cut(s) 308, 325, 348, 359
AvaII GGWCC 1 cut(s) 25
BanI GGYRCC 1 cut(s) 187
BbvI GCAGC 2 cut(s) 142, 199
BccI CCATC 3 cut(s) 92, 280, 304
BciT130I CCWGG 1 cut(s) 29
BfaI CTAG 2 cut(s) 159, 369
BfmI CTRYAG 1 cut(s) 363
BfuAI ACCTGC 2 cut(s) 246, 293
BisI GCNGC 2 cut(s) 156, 213
BlsI GCNGC 2 cut(s) 157, 214
Bme1390I CCNGG 1 cut(s) 29
Bme18I GGWCC 1 cut(s) 25
BmgT120I GGNCC 1 cut(s) 25
BmiI GGNNCC 1 cut(s) 189
BmrFI CCNGG 1 cut(s) 29
BmsI GCATC 5 cut(s) 51, 241, 306, 340, 362
BplI GAGNNNNNCTC 2 cut(s) 158, 190
BsaJI CCNNGG 1 cut(s) 132
Bsc4I CCNNNNNNNGG 3 cut(s) 34, 138, 184
Bse1I ACTGG 3 cut(s) 191, 219, 265
BseBI CCWGG 1 cut(s) 29
BseDI CCNNGG 1 cut(s) 132
BseLI CCNNNNNNNGG 3 cut(s) 34, 138, 184
BseMII CTCAG 1 cut(s) 87
BseNI ACTGG 3 cut(s) 191, 219, 265
BseRI GAGGAG 1 cut(s) 163
BseXI GCAGC 2 cut(s) 142, 199
BseYI CCCAGC 1 cut(s) 4
BsgI GTGCAG 1 cut(s) 302
BshNI GGYRCC 1 cut(s) 187
BslFI GGGAC 1 cut(s) 348
BslI CCNNNNNNNGG 3 cut(s) 34, 138, 184
BsmFI GGGAC 1 cut(s) 348
Bsp143I GATC 1 cut(s) 226
BspCNI CTCAG 1 cut(s) 88
BspLI GGNNCC 1 cut(s) 189
BspMI ACCTGC 2 cut(s) 246, 293
BspPI GGATC 1 cut(s) 234
BspT107I GGYRCC 1 cut(s) 187
BsrI ACTGG 3 cut(s) 191, 219, 265
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 1 cut(s) 226
Bst2UI CCWGG 1 cut(s) 29
Bst4CI ACNGT 2 cut(s) 123, 280
Bst6I CTCTTC 1 cut(s) 285
BstDEI CTNAG 1 cut(s) 96
BstKTI GATC 1 cut(s) 229
BstMBI GATC 1 cut(s) 226
BstMWI GCNNNNNNNGC 2 cut(s) 10, 19
BstNI CCWGG 1 cut(s) 29
BstSCI CCNGG 1 cut(s) 27
BstSFI CTRYAG 1 cut(s) 363
BstV1I GCAGC 2 cut(s) 142, 199
BstXI CCANNNNNNTGG 1 cut(s) 22
BveI ACCTGC 2 cut(s) 246, 293
Cfr13I GGNCC 1 cut(s) 25
CsiI ACCWGGT 1 cut(s) 27
CviJI RGCY 5 cut(s) 13, 155, 212, 271, 368
CviKI_1 RGCY 5 cut(s) 13, 155, 212, 271, 368
DdeI CTNAG 1 cut(s) 96
DpnI GATC 1 cut(s) 228
DpnII GATC 1 cut(s) 226
Eam1104I CTCTTC 1 cut(s) 285
EarI CTCTTC 1 cut(s) 285
Eco47I GGWCC 1 cut(s) 25
Eco57I CTGAAG 1 cut(s) 345
EcoRII CCWGG 1 cut(s) 27
EcoT22I ATGCAT 1 cut(s) 355
FaiI YATR 2 cut(s) 17, 365
FaqI GGGAC 1 cut(s) 348
Fnu4HI GCNGC 2 cut(s) 156, 213
Fsp4HI GCNGC 2 cut(s) 156, 213
FspBI CTAG 2 cut(s) 159, 369
GluI GCNGC 2 cut(s) 156, 213
GsaI CCCAGC 1 cut(s) 8
HphI GGTGA 4 cut(s) 308, 325, 348, 359
Hpy188I TCNGA 2 cut(s) 309, 325
Hpy188III TCNNGA 1 cut(s) 91
HpyAV CCTTC 5 cut(s) 188, 192, 330, 338, 369
HpyCH4III ACNGT 2 cut(s) 123, 280
HpyCH4V TGCA 3 cut(s) 241, 283, 353
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 19
HpyF3I CTNAG 1 cut(s) 96
Kzo9I GATC 1 cut(s) 226
LpnPI CCDG 9 cut(s) 8, 14, 41, 204, 232, 246, 251, 288, 323
Lsp1109I GCAGC 2 cut(s) 142, 199
LweI GCATC 5 cut(s) 51, 241, 306, 340, 362
MabI ACCWGGT 1 cut(s) 27
MaeI CTAG 2 cut(s) 159, 369
MalI GATC 1 cut(s) 228
MboI GATC 1 cut(s) 226
MboII GAAGA 1 cut(s) 302
MluCI AATT 2 cut(s) 66, 230
MmeI TCCRAC 1 cut(s) 175
MnlI CCTC 7 cut(s) 91, 142, 145, 184, 286, 292, 325
Mph1103I ATGCAT 1 cut(s) 355
MroXI GAANNNNTTC 1 cut(s) 123
MseI TTAA 1 cut(s) 379
MspR9I CCNGG 1 cut(s) 29
MvaI CCWGG 1 cut(s) 29
MwoI GCNNNNNNNGC 2 cut(s) 10, 19
NdeII GATC 1 cut(s) 226
NlaIV GGNNCC 1 cut(s) 189
NsiI ATGCAT 1 cut(s) 355
PdmI GAANNNNTTC 1 cut(s) 123
PflMI CCANNNNNTGG 1 cut(s) 34
PkrI GCNGC 2 cut(s) 157, 214
Psp6I CCWGG 1 cut(s) 27
PspFI CCCAGC 1 cut(s) 4
PspGI CCWGG 1 cut(s) 27
PspN4I GGNNCC 1 cut(s) 189
PspPI GGNCC 1 cut(s) 25
SaqAI TTAA 1 cut(s) 379
SatI GCNGC 2 cut(s) 156, 213
Sau3AI GATC 1 cut(s) 226
Sau96I GGNCC 1 cut(s) 25
ScrFI CCNGG 1 cut(s) 29
SexAI ACCWGGT 1 cut(s) 27
SfaNI GCATC 5 cut(s) 51, 241, 306, 340, 362
SfcI CTRYAG 1 cut(s) 363
SinI GGWCC 1 cut(s) 25
Sse9I AATT 2 cut(s) 66, 230
SspMI CTAG 2 cut(s) 159, 369
StyD4I CCNGG 1 cut(s) 27
TaaI ACNGT 2 cut(s) 123, 280
TaqI TCGA 3 cut(s) 92, 107, 273
TasI AATT 2 cut(s) 66, 230
Tru1I TTAA 1 cut(s) 379
Tru9I TTAA 1 cut(s) 379
TseI GCWGC 2 cut(s) 155, 212
TspDTI ATGAA 1 cut(s) 93
Van91I CCANNNNNTGG 1 cut(s) 34
VpaK11BI GGWCC 1 cut(s) 25
XmnI GAANNNNTTC 1 cut(s) 123
XspI CTAG 2 cut(s) 159, 369
Zsp2I ATGCAT 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.