RLG00000002072

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0008182
Physical Location & Seq
Forward (+)
25074382 .. 25075084
703 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002072

Sequence Viewer

Length: 489 bp
ATGGGACCAGGAGGGCAGGAGTTGGAATTTTTTGGTGGCAGTAGCGGTGGTCTGGTTGGTGAGAAGGGAGACCATGCTGTCGTTGTTCACCATGGAACGGTTGGGCCCGTACCTATGGGAAGTCCCATAATTTTGCAACAGGTCCTGACTGATATTCAGGAAGCGGGAGGTTTTCGTACTAGGGAGGCTTTCCCTTCAGTTGAGGTAAGCCCGACTTCATTGGCTATAGTCCCTGTATTGGCCAAGGTTGGTAAGGCAGCTGCTCGGATGGAGTTCTCTTCCATGCAAGTGACTCTAGTTGGGAAAAAGAAAAGCAATGAACAATTTGGAAAGAATGATCCCAGCTTTGTAGGATTTTATGCTGAAAATGCTGGTAAGGGGGAGACTGCAACTTTGATGGGGAGTGAGGCTGTGCAGATGGTGGAGTCTTCTGTTGCAGAGGGTCAGGTGGAAGGTGATGCGTCACCTTCTACTACTAGTTTCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

16.67

Weight (kDa)

4.9

Isoelectric Point (pI)

35.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 77
AciI CCGC 2 cut(s) 45, 164
AclWI GGATC 1 cut(s) 332
AcoI YGGCCR 1 cut(s) 240
AcsI RAATTY 1 cut(s) 26
AcuI CTGAAG 1 cut(s) 180
AfaI GTAC 2 cut(s) 111, 178
AfiI CCNNNNNNNGG 2 cut(s) 97, 238
AhlI ACTAGT 1 cut(s) 476
AjnI CCWGG 1 cut(s) 7
AluBI AGCT 2 cut(s) 260, 345
AluI AGCT 2 cut(s) 260, 345
Alw26I GTCTC 2 cut(s) 63, 377
AlwI GGATC 1 cut(s) 332
AlwNI CAGNNNCTG 1 cut(s) 145
AoxI GGCC 2 cut(s) 104, 240
ApaI GGGCCC 1 cut(s) 108
ApeKI GCWGC 2 cut(s) 257, 260
ApoI RAATTY 1 cut(s) 26
ArsI GACNNNNNNTTYG 2 cut(s) 376, 408
AspS9I GGNCC 4 cut(s) 5, 104, 105, 142
AsuHPI GGTGA 4 cut(s) 71, 80, 456, 467
AvaII GGWCC 2 cut(s) 5, 142
BaeGI GKGCMC 1 cut(s) 108
BalI TGGCCA 1 cut(s) 242
BanII GRGCYC 1 cut(s) 108
BbsI GAAGAC 1 cut(s) 420
BbvI GCAGC 2 cut(s) 247, 269
BccI CCATC 3 cut(s) 262, 391, 412
BciT130I CCWGG 1 cut(s) 9
BcoDI GTCTC 2 cut(s) 63, 377
BcuI ACTAGT 1 cut(s) 476
BfaI CTAG 3 cut(s) 180, 296, 477
BfmI CTRYAG 1 cut(s) 225
BisI GCNGC 2 cut(s) 258, 261
BlsI GCNGC 2 cut(s) 259, 262
Bme1390I CCNGG 1 cut(s) 9
Bme18I GGWCC 2 cut(s) 5, 142
BmgT120I GGNCC 4 cut(s) 5, 104, 105, 142
BmiI GGNNCC 2 cut(s) 6, 106
BmrFI CCNGG 1 cut(s) 9
BmsI GCATC 1 cut(s) 448
BpiI GAAGAC 1 cut(s) 420
BsaI GGTCTC 1 cut(s) 63
BsaJI CCNNGG 2 cut(s) 91, 243
Bsc4I CCNNNNNNNGG 2 cut(s) 97, 238
Bse3DI GCAATG 1 cut(s) 322
BseBI CCWGG 1 cut(s) 9
BseDI CCNNGG 2 cut(s) 91, 243
BseGI GGATG 1 cut(s) 273
BseLI CCNNNNNNNGG 2 cut(s) 97, 238
BseMI GCAATG 1 cut(s) 322
BseSI GKGCMC 1 cut(s) 108
BseXI GCAGC 2 cut(s) 247, 269
BseYI CCCAGC 1 cut(s) 341
BsgI GTGCAG 1 cut(s) 434
BshFI GGCC 2 cut(s) 106, 242
BslFI GGGAC 3 cut(s) 18, 108, 215
BslI CCNNNNNNNGG 2 cut(s) 97, 238
BsmAI GTCTC 2 cut(s) 63, 377
BsmFI GGGAC 3 cut(s) 18, 108, 215
BsnI GGCC 2 cut(s) 106, 242
Bso31I GGTCTC 1 cut(s) 63
Bsp120I GGGCCC 1 cut(s) 104
Bsp1286I GDGCHC 1 cut(s) 108
Bsp143I GATC 1 cut(s) 337
Bsp19I CCATGG 1 cut(s) 91
BspACI CCGC 2 cut(s) 45, 164
BspANI GGCC 2 cut(s) 106, 242
BspLI GGNNCC 2 cut(s) 6, 106
BspPI GGATC 1 cut(s) 332
BspTNI GGTCTC 1 cut(s) 63
BsrDI GCAATG 1 cut(s) 322
BssECI CCNNGG 2 cut(s) 91, 243
BssMI GATC 1 cut(s) 337
BssT1I CCWWGG 2 cut(s) 91, 243
Bst2UI CCWGG 1 cut(s) 9
Bst4CI ACNGT 1 cut(s) 100
Bst6I CTCTTC 1 cut(s) 283
BstDSI CCRYGG 1 cut(s) 91
BstF5I GGATG 1 cut(s) 273
BstKTI GATC 1 cut(s) 340
BstMAI GTCTC 2 cut(s) 63, 377
BstMBI GATC 1 cut(s) 337
BstMWI GCNNNNNNNGC 1 cut(s) 368
BstNI CCWGG 1 cut(s) 9
BstSCI CCNGG 1 cut(s) 7
BstSFI CTRYAG 1 cut(s) 225
BstSLI GKGCMC 1 cut(s) 108
BstV1I GCAGC 2 cut(s) 247, 269
BstV2I GAAGAC 1 cut(s) 420
BsuRI GGCC 2 cut(s) 106, 242
BtgI CCRYGG 1 cut(s) 91
BtsCI GGATG 1 cut(s) 273
CaiI CAGNNNCTG 1 cut(s) 145
Cfr13I GGNCC 4 cut(s) 5, 104, 105, 142
CseI GACGC 1 cut(s) 450
Csp6I GTAC 2 cut(s) 110, 177
CviAII CATG 3 cut(s) 74, 92, 283
CviJI RGCY 8 cut(s) 106, 188, 210, 224, 242, 260, 345, 410
CviKI_1 RGCY 8 cut(s) 106, 188, 210, 224, 242, 260, 345, 410
CviQI GTAC 2 cut(s) 110, 177
DpnI GATC 1 cut(s) 339
DpnII GATC 1 cut(s) 337
DrdI GACNNNNNNGTC 1 cut(s) 77
DseDI GACNNNNNNGTC 1 cut(s) 77
EaeI YGGCCR 1 cut(s) 240
Eam1104I CTCTTC 1 cut(s) 283
EarI CTCTTC 1 cut(s) 283
Eco130I CCWWGG 2 cut(s) 91, 243
Eco24I GRGCYC 1 cut(s) 108
Eco31I GGTCTC 1 cut(s) 63
Eco47I GGWCC 2 cut(s) 5, 142
Eco57I CTGAAG 1 cut(s) 180
EcoO109I RGGNCCY 1 cut(s) 142
EcoRII CCWGG 1 cut(s) 7
EcoT14I CCWWGG 2 cut(s) 91, 243
EcoT38I GRGCYC 1 cut(s) 108
ErhI CCWWGG 2 cut(s) 91, 243
FaeI CATG 3 cut(s) 77, 95, 286
FaiI YATR 7 cut(s) 75, 93, 116, 128, 227, 284, 360
FalI AAGNNNNNCTT 2 cut(s) 199, 231
FaqI GGGAC 3 cut(s) 18, 108, 215
FatI CATG 3 cut(s) 73, 91, 282
FauI CCCGC 1 cut(s) 157
Fnu4HI GCNGC 2 cut(s) 258, 261
FokI GGATG 1 cut(s) 280
FriOI GRGCYC 1 cut(s) 108
Fsp4HI GCNGC 2 cut(s) 258, 261
FspBI CTAG 3 cut(s) 180, 296, 477
GluI GCNGC 2 cut(s) 258, 261
GsaI CCCAGC 1 cut(s) 345
HaeIII GGCC 2 cut(s) 106, 242
HgaI GACGC 1 cut(s) 450
Hin1II CATG 3 cut(s) 77, 95, 286
HinfI GANTC 2 cut(s) 292, 425
HphI GGTGA 4 cut(s) 71, 80, 456, 467
Hpy166II GTNNAC 1 cut(s) 88
Hpy188I TCNGA 1 cut(s) 267
Hpy188III TCNNGA 2 cut(s) 145, 158
Hpy8I GTNNAC 1 cut(s) 88
HpyAV CCTTC 4 cut(s) 58, 204, 446, 477
HpyCH4III ACNGT 1 cut(s) 100
HpyCH4V TGCA 5 cut(s) 136, 286, 389, 415, 437
HpyF10VI GCNNNNNNNGC 1 cut(s) 368
Hsp92II CATG 3 cut(s) 77, 95, 286
Kzo9I GATC 1 cut(s) 337
Lsp1109I GCAGC 2 cut(s) 247, 269
LweI GCATC 1 cut(s) 448
MaeI CTAG 3 cut(s) 180, 296, 477
MaeIII GTNAC 2 cut(s) 289, 462
MalI GATC 1 cut(s) 339
MboI GATC 1 cut(s) 337
MboII GAAGA 2 cut(s) 270, 420
MhlI GDGCHC 1 cut(s) 108
MlsI TGGCCA 1 cut(s) 242
MluCI AATT 3 cut(s) 26, 129, 323
MluNI TGGCCA 1 cut(s) 242
MlyI GAGTC 2 cut(s) 286, 434
MnlI CCTC 6 cut(s) 5, 161, 178, 196, 400, 433
Mox20I TGGCCA 1 cut(s) 242
MscI TGGCCA 1 cut(s) 242
MseI TTAA 1 cut(s) 487
MslI CAYNNNNRTG 1 cut(s) 287
Msp20I TGGCCA 1 cut(s) 242
MspA1I CMGCKG 1 cut(s) 260
MspR9I CCNGG 1 cut(s) 9
MvaI CCWGG 1 cut(s) 9
MwoI GCNNNNNNNGC 1 cut(s) 368
NcoI CCATGG 1 cut(s) 91
NdeII GATC 1 cut(s) 337
NlaIII CATG 3 cut(s) 77, 95, 286
NlaIV GGNNCC 2 cut(s) 6, 106
NmuCI GTSAC 2 cut(s) 289, 462
PkrI GCNGC 2 cut(s) 259, 262
PleI GAGTC 2 cut(s) 286, 433
PpsI GAGTC 2 cut(s) 286, 433
PpuMI RGGWCCY 1 cut(s) 142
Psp5II RGGWCCY 1 cut(s) 142
Psp6I CCWGG 1 cut(s) 7
PspFI CCCAGC 1 cut(s) 341
PspGI CCWGG 1 cut(s) 7
PspN4I GGNNCC 2 cut(s) 6, 106
PspOMI GGGCCC 1 cut(s) 104
PspPI GGNCC 4 cut(s) 5, 104, 105, 142
PspPPI RGGWCCY 1 cut(s) 142
PstNI CAGNNNCTG 1 cut(s) 145
PvuII CAGCTG 1 cut(s) 260
RsaI GTAC 2 cut(s) 111, 178
RsaNI GTAC 2 cut(s) 110, 177
RseI CAYNNNNRTG 1 cut(s) 287
SaqAI TTAA 1 cut(s) 487
SatI GCNGC 2 cut(s) 258, 261
Sau3AI GATC 1 cut(s) 337
Sau96I GGNCC 4 cut(s) 5, 104, 105, 142
SchI GAGTC 2 cut(s) 286, 434
ScrFI CCNGG 1 cut(s) 9
SduI GDGCHC 1 cut(s) 108
SfaNI GCATC 1 cut(s) 448
SfcI CTRYAG 1 cut(s) 225
SinI GGWCC 2 cut(s) 5, 142
SmiMI CAYNNNNRTG 1 cut(s) 287
SpeI ACTAGT 1 cut(s) 476
Sse9I AATT 3 cut(s) 26, 129, 323
SsiI CCGC 2 cut(s) 45, 164
SspMI CTAG 3 cut(s) 180, 296, 477
StyD4I CCNGG 1 cut(s) 7
StyI CCWWGG 2 cut(s) 91, 243
TaaI ACNGT 1 cut(s) 100
TasI AATT 3 cut(s) 26, 129, 323
Tru1I TTAA 1 cut(s) 487
Tru9I TTAA 1 cut(s) 487
TseFI GTSAC 2 cut(s) 289, 462
TseI GCWGC 2 cut(s) 257, 260
Tsp45I GTSAC 2 cut(s) 289, 462
TspDTI ATGAA 3 cut(s) 207, 333, 472
VpaK11BI GGWCC 2 cut(s) 5, 142
XapI RAATTY 1 cut(s) 26
XcmI CCANNNNNNNNNTGG 1 cut(s) 98
XspI CTAG 3 cut(s) 180, 296, 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.