Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0008182

Physical Location & Seq

Genomic Coordinates Reverse (-)

47639434 .. 47640156

Gene Structure 723 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003366

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGAGACCGGGGTTGATCGGAATTGCCATGCTCTGGTTACACTTGAGCAGGTATTGGGTTTCTCTGATACTACTGCTGATAGCCATGTCGTGGCGTCAACTCAAGGGGTATTGAGCTCCAAGCTGTTGGGAAAGCCCACATTGCTGGACCAGGTTTTGGTCGGCATCACAACAGCAAAGGGTTTGAAAACTGCTGTTCCTCTTCCCATCATCCCGACTGAGGTTTCATCAAAATCATTAGAACTGTTTCCTGCCTCGGTAGGGACTGGTAAGGAGGCTGCTAGGGTGGAGTTCTCCTCCCTTCAAGTGCACAACAATGGCAAGTTGATGGTTACGCCAAAGAAGAAGAAGATTGGGTGTCCCAAGGGAAGTAAAAACAGAATTAAGAATGCAGATGAACAAGAAGTGAAAAAGCTTCGAAGGTATAAGCGTCGTGGAAAATCCTTGCTGAATGCTTCAGACCTGCATTCATCTGAGGCTACACCTGGTAGTAAGCTCGATGCTGTGCAGATGGAAGAGGGTGAGGCCAGTCAGATGGTGATGCCTTCTAAAGCAGAGGGACAGGTGGAAGGTTATGCATCACCTTCTATAGCTAGTTTAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

202

Amino Acids

21.37

Weight (kDa)

9.3

Isoelectric Point (pI)

31.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008182)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0177201
rosa_laevigata	RLG00000002072 RLG00000003366 RLG00000015067 RLG00000019038 RLG00000022784 RLG00000030491 RLG00000033633 RLG00000033699
rosa_multiflora	Rmu_sc0000192.1_g000005 Rmu_sc0002080.1_g000002 Rmu_sc0005693.1_g000021 Rmu_sc0025598.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001760 Rroxscaffold_2G00114400
rosa_rugosa	Rorug04G0365600 Rorug04G0365700
rosa_samantha	Rh4BG150600 Rh4DG435600 Rh5BG297500 Rh7BG001200 Rh7BG003700 Rh7CG003600 Rh7DG003600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	40, 471
AccB7I	CCANNNNNTGG	3 cut(s)	34, 91, 157
AcuI	CTGAAG	1 cut(s)	441
AcyI	GRCGYC	1 cut(s)	95
AfiI	CCNNNNNNNGG	5 cut(s)	34, 91, 157, 220, 261
AgsI	TTSAA	2 cut(s)	187, 305
AjnI	CCWGG	2 cut(s)	150, 484
AluBI	AGCT	5 cut(s)	117, 124, 415, 496, 593
AluI	AGCT	5 cut(s)	117, 124, 415, 496, 593
Alw21I	GWGCWC	2 cut(s)	119, 312
Alw44I	GTGCAC	1 cut(s)	308
AoxI	GGCC	1 cut(s)	525
ApaLI	GTGCAC	1 cut(s)	308
ApeKI	GCWGC	1 cut(s)	278
Asp700I	GAANNNNTTC	1 cut(s)	246
AspS9I	GGNCC	1 cut(s)	148
AsuC2I	CCSGG	1 cut(s)	10
AsuHPI	GGTGA	3 cut(s)	533, 550, 573
AsuII	TTCGAA	1 cut(s)	418
AvaII	GGWCC	1 cut(s)	148
BaeGI	GKGCMC	1 cut(s)	312
BanII	GRGCYC	1 cut(s)	119
Bbv12I	GWGCWC	2 cut(s)	119, 312
BbvI	GCAGC	1 cut(s)	265
BccI	CCATC	4 cut(s)	215, 322, 505, 529
BciT130I	CCWGG	2 cut(s)	152, 486
BcnI	CCSGG	1 cut(s)	10
BfaI	CTAG	2 cut(s)	282, 594
BfmI	CTRYAG	1 cut(s)	588
BfuAI	ACCTGC	2 cut(s)	40, 471
BisI	GCNGC	1 cut(s)	279
BlsI	GCNGC	1 cut(s)	280
Bme1390I	CCNGG	3 cut(s)	10, 152, 486
Bme18I	GGWCC	1 cut(s)	148
BmgT120I	GGNCC	1 cut(s)	148
BmrFI	CCNGG	3 cut(s)	10, 152, 486
BmsI	GCATC	4 cut(s)	174, 490, 531, 587
BplI	GAGNNNNNCTC	2 cut(s)	281, 313
Bpu14I	TTCGAA	1 cut(s)	418
BpuEI	CTTGAG	2 cut(s)	65, 87
BpuMI	CCSGG	1 cut(s)	10
BsaHI	GRCGYC	1 cut(s)	95
BsaJI	CCNNGG	3 cut(s)	9, 255, 363
Bsc4I	CCNNNNNNNGG	5 cut(s)	34, 91, 157, 220, 261
Bse1I	ACTGG	2 cut(s)	271, 528
Bse3DI	GCAATG	1 cut(s)	140
BseBI	CCWGG	2 cut(s)	152, 486
BseDI	CCNNGG	3 cut(s)	9, 255, 363
BseGI	GGATG	1 cut(s)	210
BseLI	CCNNNNNNNGG	5 cut(s)	34, 91, 157, 220, 261
BseMI	GCAATG	1 cut(s)	140
BseMII	CTCAG	2 cut(s)	210, 465
BseNI	ACTGG	2 cut(s)	271, 528
BseRI	GAGGAG	1 cut(s)	286
BseSI	GKGCMC	1 cut(s)	312
BseXI	GCAGC	1 cut(s)	265
BsgI	GTGCAG	1 cut(s)	527
BshFI	GGCC	1 cut(s)	527
BsiHKAI	GWGCWC	2 cut(s)	119, 312
BsiSI	CCGG	1 cut(s)	9
BslFI	GGGAC	3 cut(s)	277, 345, 573
BslI	CCNNNNNNNGG	5 cut(s)	34, 91, 157, 220, 261
BsmFI	GGGAC	3 cut(s)	277, 345, 573
BsmI	GAATGC	3 cut(s)	394, 457, 466
BsnI	GGCC	1 cut(s)	527
Bsp119I	TTCGAA	1 cut(s)	418
Bsp1286I	GDGCHC	2 cut(s)	119, 312
Bsp143I	GATC	1 cut(s)	16
BspANI	GGCC	1 cut(s)	527
BspCNI	CTCAG	2 cut(s)	211, 466
BspMI	ACCTGC	2 cut(s)	40, 471
BspT104I	TTCGAA	1 cut(s)	418
BsrDI	GCAATG	1 cut(s)	140
BsrI	ACTGG	2 cut(s)	271, 528
BssECI	CCNNGG	3 cut(s)	9, 255, 363
BssMI	GATC	1 cut(s)	16
BssNI	GRCGYC	1 cut(s)	95
BssT1I	CCWWGG	1 cut(s)	363
Bst2UI	CCWGG	2 cut(s)	152, 486
Bst4CI	ACNGT	1 cut(s)	246
Bst6I	CTCTTC	2 cut(s)	207, 510
BstACI	GRCGYC	1 cut(s)	95
BstBI	TTCGAA	1 cut(s)	418
BstDEI	CTNAG	2 cut(s)	219, 474
BstF5I	GGATG	1 cut(s)	210
BstKTI	GATC	1 cut(s)	19
BstMBI	GATC	1 cut(s)	16
BstMWI	GCNNNNNNNGC	1 cut(s)	142
BstNI	CCWGG	2 cut(s)	152, 486
BstSCI	CCNGG	3 cut(s)	8, 150, 484
BstSFI	CTRYAG	1 cut(s)	588
BstSLI	GKGCMC	1 cut(s)	312
BstV1I	GCAGC	1 cut(s)	265
BstXI	CCANNNNNNTGG	3 cut(s)	127, 145, 535
BsuRI	GGCC	1 cut(s)	527
BtsCI	GGATG	1 cut(s)	210
BveI	ACCTGC	2 cut(s)	40, 471
Cfr13I	GGNCC	1 cut(s)	148
CseI	GACGC	2 cut(s)	84, 419
CsiI	ACCWGGT	2 cut(s)	150, 484
CviAII	CATG	2 cut(s)	29, 86
DdeI	CTNAG	2 cut(s)	219, 474
DpnI	GATC	1 cut(s)	18
DpnII	GATC	1 cut(s)	16
Eam1104I	CTCTTC	2 cut(s)	207, 510
EarI	CTCTTC	2 cut(s)	207, 510
Ecl136II	GAGCTC	1 cut(s)	117
Eco130I	CCWWGG	1 cut(s)	363
Eco24I	GRGCYC	1 cut(s)	119
Eco47I	GGWCC	1 cut(s)	148
Eco53kI	GAGCTC	1 cut(s)	117
Eco57I	CTGAAG	1 cut(s)	441
EcoICRI	GAGCTC	1 cut(s)	117
EcoRII	CCWGG	2 cut(s)	150, 484
EcoT14I	CCWWGG	1 cut(s)	363
EcoT22I	ATGCAT	1 cut(s)	580
EcoT38I	GRGCYC	1 cut(s)	119
ErhI	CCWWGG	1 cut(s)	363
FaeI	CATG	2 cut(s)	32, 89
FaiI	YATR	5 cut(s)	30, 87, 426, 576, 590
FaqI	GGGAC	3 cut(s)	277, 345, 573
FatI	CATG	2 cut(s)	28, 85
Fnu4HI	GCNGC	1 cut(s)	279
FokI	GGATG	1 cut(s)	197
FriOI	GRGCYC	1 cut(s)	119
Fsp4HI	GCNGC	1 cut(s)	279
FspBI	CTAG	2 cut(s)	282, 594
GluI	GCNGC	1 cut(s)	279
HaeIII	GGCC	1 cut(s)	527
HapII	CCGG	1 cut(s)	9
HgaI	GACGC	2 cut(s)	84, 419
Hin1I	GRCGYC	1 cut(s)	95
Hin1II	CATG	2 cut(s)	32, 89
HincII	GTYRAC	1 cut(s)	99
HindII	GTYRAC	1 cut(s)	99
HindIII	AAGCTT	1 cut(s)	413
HpaII	CCGG	1 cut(s)	9
HphI	GGTGA	3 cut(s)	533, 550, 573
Hpy166II	GTNNAC	2 cut(s)	99, 310
Hpy188I	TCNGA	5 cut(s)	21, 67, 460, 475, 534
Hpy188III	TCNNGA	1 cut(s)	214
Hpy8I	GTNNAC	2 cut(s)	99, 310
Hpy99I	CGWCG	1 cut(s)	435
HpyAV	CCTTC	5 cut(s)	311, 414, 555, 563, 594
HpyCH4III	ACNGT	1 cut(s)	246
HpyCH4V	TGCA	5 cut(s)	310, 392, 466, 508, 578
HpyF10VI	GCNNNNNNNGC	1 cut(s)	142
HpyF3I	CTNAG	2 cut(s)	219, 474
Hsp92I	GRCGYC	1 cut(s)	95
Hsp92II	CATG	2 cut(s)	32, 89
Kzo9I	GATC	1 cut(s)	16
LmnI	GCTCC	1 cut(s)	122
Lsp1109I	GCAGC	1 cut(s)	265
LweI	GCATC	4 cut(s)	174, 490, 531, 587
MabI	ACCWGGT	2 cut(s)	150, 484
MaeI	CTAG	2 cut(s)	282, 594
MaeIII	GTNAC	2 cut(s)	37, 331
MalI	GATC	1 cut(s)	18
MboI	GATC	1 cut(s)	16
MboII	GAAGA	5 cut(s)	194, 355, 358, 361, 527
MhlI	GDGCHC	2 cut(s)	119, 312
MluCI	AATT	2 cut(s)	22, 381
MnlI	CCTC	9 cut(s)	210, 214, 265, 268, 307, 469, 511, 517, 550
Mph1103I	ATGCAT	1 cut(s)	580
MroXI	GAANNNNTTC	1 cut(s)	246
MseI	TTAA	2 cut(s)	384, 604
MslI	CAYNNNNRTG	1 cut(s)	315
MspI	CCGG	1 cut(s)	9
MspR9I	CCNGG	3 cut(s)	10, 152, 486
Mva1269I	GAATGC	3 cut(s)	394, 457, 466
MvaI	CCWGG	2 cut(s)	152, 486
MwoI	GCNNNNNNNGC	1 cut(s)	142
NciI	CCSGG	1 cut(s)	10
NdeII	GATC	1 cut(s)	16
NlaIII	CATG	2 cut(s)	32, 89
NsiI	ATGCAT	1 cut(s)	580
NspV	TTCGAA	1 cut(s)	418
PctI	GAATGC	3 cut(s)	394, 457, 466
PdmI	GAANNNNTTC	1 cut(s)	246
PflMI	CCANNNNNTGG	3 cut(s)	34, 91, 157
PkrI	GCNGC	1 cut(s)	280
Psp124BI	GAGCTC	1 cut(s)	119
Psp6I	CCWGG	2 cut(s)	150, 484
PspGI	CCWGG	2 cut(s)	150, 484
PspPI	GGNCC	1 cut(s)	148
RseI	CAYNNNNRTG	1 cut(s)	315
SacI	GAGCTC	1 cut(s)	119
SaqAI	TTAA	2 cut(s)	384, 604
SatI	GCNGC	1 cut(s)	279
Sau3AI	GATC	1 cut(s)	16
Sau96I	GGNCC	1 cut(s)	148
ScrFI	CCNGG	3 cut(s)	10, 152, 486
SduI	GDGCHC	2 cut(s)	119, 312
SexAI	ACCWGGT	2 cut(s)	150, 484
SfaNI	GCATC	4 cut(s)	174, 490, 531, 587
SfcI	CTRYAG	1 cut(s)	588
SfuI	TTCGAA	1 cut(s)	418
SinI	GGWCC	1 cut(s)	148
SmiMI	CAYNNNNRTG	1 cut(s)	315
SmlI	CTYRAG	2 cut(s)	44, 102
SmoI	CTYRAG	2 cut(s)	44, 102
Sse9I	AATT	2 cut(s)	22, 381
SspMI	CTAG	2 cut(s)	282, 594
SstI	GAGCTC	1 cut(s)	119
StyD4I	CCNGG	3 cut(s)	8, 150, 484
StyI	CCWWGG	1 cut(s)	363
TaaI	ACNGT	1 cut(s)	246
TaqI	TCGA	2 cut(s)	418, 498
TasI	AATT	2 cut(s)	22, 381
Tru1I	TTAA	2 cut(s)	384, 604
Tru9I	TTAA	2 cut(s)	384, 604
TseI	GCWGC	1 cut(s)	278
TspDTI	ATGAA	3 cut(s)	216, 411, 459
Van91I	CCANNNNNTGG	3 cut(s)	34, 91, 157
VneI	GTGCAC	1 cut(s)	308
VpaK11BI	GGWCC	1 cut(s)	148
XmnI	GAANNNNTTC	1 cut(s)	246
XspI	CTAG	2 cut(s)	282, 594
Zsp2I	ATGCAT	1 cut(s)	580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.