Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025598.1

Orthogroup ID

OG0008182

Physical Location & Seq

Genomic Coordinates Reverse (-)

487 .. 1518

Gene Structure 1032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025598.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

atggcgttgtccatggtgggatcgacgctcggaatggtgctccggttggatcctaacggtctaaaaagacaagaagaagaacagagaattaagattccttttgatgtccgtcgtcggattcgtgtctggaaggtttttgaattctctccagttgtgaaaccggagctcacttttatctttgagaaagtcaagggcttttgtcgtgattgcgggttatttgttcatgatgccctaggttgtgataagatgctggttaaggagaaggaggaaattcaggctaaaccaccggcgacggcattggctggcttgtccttgacttcaggagtagatgttagccctaatcccttggatgtttctggtatggggttggggatggagaccggggttgataggaattgtcatgctctggttacacttgagcaggcatcgggtttctttgatactactgctggtagccatgtcgtggcgtcaactcaaggggtattgagctccaagatgttgggtaagcccctattgctggaccaggttttggtcggcgtcacaacatcaaagggattgaacactgctattccacttcccatcataccaactgaggtttactcgaaatcactggaactgtttcctgcctcggtagggtctggtaaggaggctgctagggtggagttctcctcccttcaagtgcataaaaatggtaagttggtggtttcgccaaagaagaagaagattgggcgtcccaagggaagtaaaaacagaattaagaatgcagatgaacaagaagtgaaaaagcttcgaaggtataggcgtcgtggaaaacccttgatggatgagggtgaggcagttcagatggtgatgccttctgacgcagagggacatgtggaaggtgatgcatcaccttctataactagtttggtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4283 Exo_endo_phos_2 RNase_H RVT_1 zf-CCHC_4

Protein Analysis

304

Amino Acids

33.04

Weight (kDa)

9.34

Isoelectric Point (pI)

39.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008182)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0177201
rosa_laevigata	RLG00000002072 RLG00000003366 RLG00000015067 RLG00000019038 RLG00000022784 RLG00000030491 RLG00000033633 RLG00000033699
rosa_multiflora	Rmu_sc0000192.1_g000005 Rmu_sc0002080.1_g000002 Rmu_sc0005693.1_g000021 Rmu_sc0025598.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001760 Rroxscaffold_2G00114400
rosa_rugosa	Rorug04G0365600 Rorug04G0365700
rosa_samantha	Rh4BG150600 Rh4DG435600 Rh5BG297500 Rh7BG001200 Rh7BG003700 Rh7CG003600 Rh7DG003600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	463, 529
AciI	CCGC	1 cut(s)	210
AclWI	GGATC	3 cut(s)	28, 44, 57
AcsI	RAATTY	2 cut(s)	140, 270
AcuI	CTGAAG	1 cut(s)	303
AcyI	GRCGYC	4 cut(s)	467, 537, 730, 802
AfiI	CCNNNNNNNGG	4 cut(s)	463, 517, 529, 633
AflIII	ACRYGT	1 cut(s)	871
AgsI	TTSAA	3 cut(s)	140, 559, 677
AhlI	ACTAGT	1 cut(s)	902
AjnI	CCWGG	1 cut(s)	522
AluBI	AGCT	3 cut(s)	166, 489, 787
AluI	AGCT	3 cut(s)	166, 489, 787
Alw21I	GWGCWC	3 cut(s)	42, 168, 491
Alw26I	GTCTC	1 cut(s)	371
AlwI	GGATC	3 cut(s)	28, 44, 57
ApeKI	GCWGC	1 cut(s)	650
ApoI	RAATTY	2 cut(s)	140, 270
Asp700I	GAANNNNTTC	1 cut(s)	618
AspA2I	CCTAGG	1 cut(s)	232
AspS9I	GGNCC	1 cut(s)	520
AsuC2I	CCSGG	1 cut(s)	382
AsuHPI	GGTGA	4 cut(s)	842, 859, 882, 893
AsuII	TTCGAA	1 cut(s)	790
AvaII	GGWCC	1 cut(s)	520
AvrII	CCTAGG	1 cut(s)	232
BamHI	GGATCC	1 cut(s)	49
BanII	GRGCYC	2 cut(s)	168, 491
Bbv12I	GWGCWC	3 cut(s)	42, 168, 491
BbvI	GCAGC	1 cut(s)	637
BccI	CCATC	4 cut(s)	367, 587, 814, 838
BceAI	ACGGC	1 cut(s)	309
BciT130I	CCWGG	1 cut(s)	524
BcnI	CCSGG	1 cut(s)	382
BcoDI	GTCTC	1 cut(s)	371
BcuI	ACTAGT	1 cut(s)	902
BfaI	CTAG	3 cut(s)	233, 654, 903
BisI	GCNGC	1 cut(s)	651
BlnI	CCTAGG	1 cut(s)	232
BlsI	GCNGC	1 cut(s)	652
Bme1390I	CCNGG	2 cut(s)	382, 524
Bme18I	GGWCC	1 cut(s)	520
BmgT120I	GGNCC	1 cut(s)	520
BmiI	GGNNCC	1 cut(s)	51
BmrFI	CCNGG	2 cut(s)	382, 524
BmsI	GCATC	6 cut(s)	217, 237, 434, 840, 874, 896
BplI	GAGNNNNNCTC	4 cut(s)	584, 616, 653, 685
BpmI	CTGGAG	1 cut(s)	132
Bpu14I	TTCGAA	1 cut(s)	790
BpuEI	CTTGAG	2 cut(s)	437, 459
BpuMI	CCSGG	1 cut(s)	382
BsaHI	GRCGYC	4 cut(s)	467, 537, 730, 802
BsaI	GGTCTC	1 cut(s)	371
BsaJI	CCNNGG	6 cut(s)	12, 232, 345, 381, 627, 735
BsaWI	WCCGGW	2 cut(s)	42, 160
BsaXI	ACNNNNNCTCC	2 cut(s)	315, 345
Bsc4I	CCNNNNNNNGG	4 cut(s)	463, 517, 529, 633
Bse118I	RCCGGY	1 cut(s)	286
Bse1I	ACTGG	2 cut(s)	149, 615
BseBI	CCWGG	1 cut(s)	524
BseDI	CCNNGG	6 cut(s)	12, 232, 345, 381, 627, 735
BseGI	GGATG	3 cut(s)	355, 378, 829
BseLI	CCNNNNNNNGG	4 cut(s)	463, 517, 529, 633
BseMII	CTCAG	1 cut(s)	582
BseNI	ACTGG	2 cut(s)	149, 615
BseRI	GAGGAG	1 cut(s)	658
BseXI	GCAGC	1 cut(s)	637
BsiHKAI	GWGCWC	3 cut(s)	42, 168, 491
BsiSI	CCGG	4 cut(s)	43, 161, 287, 381
BslFI	GGGAC	2 cut(s)	717, 882
BslI	CCNNNNNNNGG	4 cut(s)	463, 517, 529, 633
BsmAI	GTCTC	1 cut(s)	371
BsmFI	GGGAC	2 cut(s)	717, 882
BsmI	GAATGC	1 cut(s)	766
Bso31I	GGTCTC	1 cut(s)	371
Bsp119I	TTCGAA	1 cut(s)	790
Bsp1286I	GDGCHC	3 cut(s)	42, 168, 491
Bsp143I	GATC	2 cut(s)	20, 49
Bsp19I	CCATGG	1 cut(s)	12
BspACI	CCGC	1 cut(s)	210
BspCNI	CTCAG	1 cut(s)	583
BspHI	TCATGA	1 cut(s)	223
BspLI	GGNNCC	1 cut(s)	51
BspPI	GGATC	3 cut(s)	28, 44, 57
BspT104I	TTCGAA	1 cut(s)	790
BspTNI	GGTCTC	1 cut(s)	371
BsrFI	RCCGGY	1 cut(s)	286
BsrI	ACTGG	2 cut(s)	149, 615
BssAI	RCCGGY	1 cut(s)	286
BssECI	CCNNGG	6 cut(s)	12, 232, 345, 381, 627, 735
BssMI	GATC	2 cut(s)	20, 49
BssNI	GRCGYC	4 cut(s)	467, 537, 730, 802
BssT1I	CCWWGG	4 cut(s)	12, 232, 345, 735
Bst2UI	CCWGG	1 cut(s)	524
Bst4CI	ACNGT	2 cut(s)	59, 618
BstACI	GRCGYC	4 cut(s)	467, 537, 730, 802
BstBI	TTCGAA	1 cut(s)	790
BstC8I	GCNNGC	2 cut(s)	304, 423
BstDEI	CTNAG	1 cut(s)	591
BstDSI	CCRYGG	1 cut(s)	12
BstF5I	GGATG	3 cut(s)	355, 378, 829
BstKTI	GATC	2 cut(s)	23, 52
BstMAI	GTCTC	1 cut(s)	371
BstMBI	GATC	2 cut(s)	20, 49
BstMWI	GCNNNNNNNGC	1 cut(s)	514
BstNI	CCWGG	1 cut(s)	524
BstNSI	RCATGY	1 cut(s)	875
BstSCI	CCNGG	2 cut(s)	380, 522
BstV1I	GCAGC	1 cut(s)	637
BstX2I	RGATCY	1 cut(s)	49
BstXI	CCANNNNNNTGG	1 cut(s)	499
BstYI	RGATCY	1 cut(s)	49
BtgI	CCRYGG	1 cut(s)	12
BtsCI	GGATG	3 cut(s)	355, 378, 829
BtsI	GCAGTG	1 cut(s)	561
BtsIMutI	CAGTG	2 cut(s)	561, 608
Cac8I	GCNNGC	2 cut(s)	304, 423
CciI	TCATGA	1 cut(s)	223
Cfr10I	RCCGGY	1 cut(s)	286
Cfr13I	GGNCC	1 cut(s)	520
CseI	GACGC	6 cut(s)	34, 456, 526, 719, 791, 869
CsiI	ACCWGGT	1 cut(s)	522
CviAII	CATG	5 cut(s)	13, 224, 401, 458, 872
DdeI	CTNAG	1 cut(s)	591
DpnI	GATC	2 cut(s)	22, 51
DpnII	GATC	2 cut(s)	20, 49
Ecl136II	GAGCTC	2 cut(s)	166, 489
Eco130I	CCWWGG	4 cut(s)	12, 232, 345, 735
Eco24I	GRGCYC	2 cut(s)	168, 491
Eco31I	GGTCTC	1 cut(s)	371
Eco47I	GGWCC	1 cut(s)	520
Eco53kI	GAGCTC	2 cut(s)	166, 489
Eco57I	CTGAAG	1 cut(s)	303
EcoICRI	GAGCTC	2 cut(s)	166, 489
EcoRI	GAATTC	1 cut(s)	140
EcoRII	CCWGG	1 cut(s)	522
EcoT14I	CCWWGG	4 cut(s)	12, 232, 345, 735
EcoT22I	ATGCAT	1 cut(s)	889
EcoT38I	GRGCYC	2 cut(s)	168, 491
ErhI	CCWWGG	4 cut(s)	12, 232, 345, 735
FaeI	CATG	5 cut(s)	16, 227, 404, 461, 875
FaqI	GGGAC	2 cut(s)	717, 882
FatI	CATG	5 cut(s)	12, 223, 400, 457, 871
FauI	CCCGC	1 cut(s)	203
Fnu4HI	GCNGC	1 cut(s)	651
FokI	GGATG	3 cut(s)	362, 385, 836
FriOI	GRGCYC	2 cut(s)	168, 491
Fsp4HI	GCNGC	1 cut(s)	651
FspBI	CTAG	3 cut(s)	233, 654, 903
GluI	GCNGC	1 cut(s)	651
GsuI	CTGGAG	1 cut(s)	132
HapII	CCGG	4 cut(s)	43, 161, 287, 381
HgaI	GACGC	6 cut(s)	34, 456, 526, 719, 791, 869
Hin1I	GRCGYC	4 cut(s)	467, 537, 730, 802
Hin1II	CATG	5 cut(s)	16, 227, 404, 461, 875
HincII	GTYRAC	1 cut(s)	471
HindII	GTYRAC	1 cut(s)	471
HindIII	AAGCTT	1 cut(s)	785
HinfI	GANTC	2 cut(s)	94, 118
HpaII	CCGG	4 cut(s)	43, 161, 287, 381
HphI	GGTGA	4 cut(s)	842, 859, 882, 893
Hpy166II	GTNNAC	2 cut(s)	471, 598
Hpy188I	TCNGA	4 cut(s)	32, 117, 843, 859
Hpy188III	TCNNGA	4 cut(s)	127, 203, 224, 321
Hpy8I	GTNNAC	2 cut(s)	471, 598
Hpy99I	CGWCG	5 cut(s)	28, 114, 117, 295, 807
HpyAV	CCTTC	7 cut(s)	124, 256, 683, 786, 864, 872, 903
HpyCH4III	ACNGT	2 cut(s)	59, 618
HpyCH4V	TGCA	3 cut(s)	682, 764, 887
HpyF10VI	GCNNNNNNNGC	1 cut(s)	514
HpyF3I	CTNAG	1 cut(s)	591
Hsp92I	GRCGYC	4 cut(s)	467, 537, 730, 802
Hsp92II	CATG	5 cut(s)	16, 227, 404, 461, 875
Kzo9I	GATC	2 cut(s)	20, 49
LmnI	GCTCC	3 cut(s)	45, 163, 494
Lsp1109I	GCAGC	1 cut(s)	637
LweI	GCATC	6 cut(s)	217, 237, 434, 840, 874, 896
MabI	ACCWGGT	1 cut(s)	522
MaeI	CTAG	3 cut(s)	233, 654, 903
MaeIII	GTNAC	2 cut(s)	409, 538
MalI	GATC	2 cut(s)	22, 51
MboI	GATC	2 cut(s)	20, 49
MboII	GAAGA	5 cut(s)	86, 89, 727, 730, 733
MflI	RGATCY	1 cut(s)	49
MhlI	GDGCHC	3 cut(s)	42, 168, 491
MluCI	AATT	5 cut(s)	87, 140, 270, 394, 753
MmeI	TCCRAC	2 cut(s)	27, 95
MnlI	CCTC	8 cut(s)	259, 586, 637, 640, 679, 820, 826, 859
Mph1103I	ATGCAT	1 cut(s)	889
MroXI	GAANNNNTTC	1 cut(s)	618
MseI	TTAA	4 cut(s)	90, 255, 756, 913
MslI	CAYNNNNRTG	1 cut(s)	687
MspI	CCGG	4 cut(s)	43, 161, 287, 381
MspR9I	CCNGG	2 cut(s)	382, 524
Mva1269I	GAATGC	1 cut(s)	766
MvaI	CCWGG	1 cut(s)	524
MwoI	GCNNNNNNNGC	1 cut(s)	514
NciI	CCSGG	1 cut(s)	382
NcoI	CCATGG	1 cut(s)	12
NdeII	GATC	2 cut(s)	20, 49
NlaIII	CATG	5 cut(s)	16, 227, 404, 461, 875
NlaIV	GGNNCC	1 cut(s)	51
NmuCI	GTSAC	1 cut(s)	538
NsiI	ATGCAT	1 cut(s)	889
NspI	RCATGY	1 cut(s)	875
NspV	TTCGAA	1 cut(s)	790
PagI	TCATGA	1 cut(s)	223
PciI	ACATGT	1 cut(s)	871
PcsI	WCGNNNNNNNCGW	1 cut(s)	118
PctI	GAATGC	1 cut(s)	766
PdmI	GAANNNNTTC	1 cut(s)	618
PfeI	GAWTC	2 cut(s)	94, 118
PflMI	CCANNNNNTGG	2 cut(s)	463, 529
PkrI	GCNGC	1 cut(s)	652
PscI	ACATGT	1 cut(s)	871
Psp124BI	GAGCTC	2 cut(s)	168, 491
Psp6I	CCWGG	1 cut(s)	522
PspGI	CCWGG	1 cut(s)	522
PspN4I	GGNNCC	1 cut(s)	51
PspPI	GGNCC	1 cut(s)	520
PsuI	RGATCY	1 cut(s)	49
RseI	CAYNNNNRTG	1 cut(s)	687
SacI	GAGCTC	2 cut(s)	168, 491
SaqAI	TTAA	4 cut(s)	90, 255, 756, 913
SatI	GCNGC	1 cut(s)	651
Sau3AI	GATC	2 cut(s)	20, 49
Sau96I	GGNCC	1 cut(s)	520
ScrFI	CCNGG	2 cut(s)	382, 524
SduI	GDGCHC	3 cut(s)	42, 168, 491
SexAI	ACCWGGT	1 cut(s)	522
SfaNI	GCATC	6 cut(s)	217, 237, 434, 840, 874, 896
SfuI	TTCGAA	1 cut(s)	790
SgrAI	CRCCGGYG	1 cut(s)	286
SinI	GGWCC	1 cut(s)	520
SmiMI	CAYNNNNRTG	1 cut(s)	687
SmlI	CTYRAG	2 cut(s)	416, 474
SmoI	CTYRAG	2 cut(s)	416, 474
SpeI	ACTAGT	1 cut(s)	902
Sse9I	AATT	5 cut(s)	87, 140, 270, 394, 753
SsiI	CCGC	1 cut(s)	210
SspMI	CTAG	3 cut(s)	233, 654, 903
SstI	GAGCTC	2 cut(s)	168, 491
StyD4I	CCNGG	2 cut(s)	380, 522
StyI	CCWWGG	4 cut(s)	12, 232, 345, 735
TaaI	ACNGT	2 cut(s)	59, 618
TaqI	TCGA	3 cut(s)	23, 602, 790
TasI	AATT	5 cut(s)	87, 140, 270, 394, 753
TfiI	GAWTC	2 cut(s)	94, 118
Tru1I	TTAA	4 cut(s)	90, 255, 756, 913
Tru9I	TTAA	4 cut(s)	90, 255, 756, 913
TscAI	CASTG	2 cut(s)	568, 615
TseFI	GTSAC	1 cut(s)	538
TseI	GCWGC	1 cut(s)	650
Tsp45I	GTSAC	1 cut(s)	538
TspDTI	ATGAA	2 cut(s)	212, 783
TspGWI	ACGGA	1 cut(s)	98
TspRI	CASTG	2 cut(s)	568, 615
Van91I	CCANNNNNTGG	2 cut(s)	463, 529
VpaK11BI	GGWCC	1 cut(s)	520
XapI	RAATTY	2 cut(s)	140, 270
XceI	RCATGY	1 cut(s)	875
XmaJI	CCTAGG	1 cut(s)	232
XmnI	GAANNNNTTC	1 cut(s)	618
XspI	CTAG	3 cut(s)	233, 654, 903
Zsp2I	ATGCAT	1 cut(s)	889

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.