Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0008182

Physical Location & Seq

Genomic Coordinates Forward (+)

29793954 .. 29794999

Gene Structure 1046 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033633

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGAGTCCGGGGTTGATCGGAATTGTCATGCTCTGGTTACACTTGAGCAGGCATCGGGTTTCTCTGATACTACTGCTGGTAGCCATGTCGTGGCGTCAACTCAAGGGGTATTGAGCTCCAAGATGTTGGGAAAGCCCATACTGCTGGACCAGGTTTTGGTCGGCATCACAACAGCAAAGGGTTTGAAAACTGCTGTTCCACTTCCCATCATCCCGAATGAGGTTTCATCGAAATCATTGGAACTGTTTCGTGCCTCGGTAGGGACTGGTAAGGAGGCTACTAGGGTGGAGTTCTCCTCCCTTCAAGTGGTGCCAGTTGGAAGGAAAAGAAAAGCTGCGACCAGTTTGGATCGATTTGAACTGCAATCATCTGATGCTACAACTGGTAGTAAGCTCGATGCTGTGCAGATGGAAGAGGGTGAGGCAAGTCAGATGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

147

Amino Acids

15.31

Weight (kDa)

6.11

Isoelectric Point (pI)

32.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008182)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0177201
rosa_laevigata	RLG00000002072 RLG00000003366 RLG00000015067 RLG00000019038 RLG00000022784 RLG00000030491 RLG00000033633 RLG00000033699
rosa_multiflora	Rmu_sc0000192.1_g000005 Rmu_sc0002080.1_g000002 Rmu_sc0005693.1_g000021 Rmu_sc0025598.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001760 Rroxscaffold_2G00114400
rosa_rugosa	Rorug04G0365600 Rorug04G0365700
rosa_samantha	Rh4BG150600 Rh4DG435600 Rh5BG297500 Rh7BG001200 Rh7BG003700 Rh7CG003600 Rh7DG003600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	310
AccB7I	CCANNNNNTGG	2 cut(s)	91, 157
AclWI	GGATC	1 cut(s)	357
AcyI	GRCGYC	1 cut(s)	95
AfiI	CCNNNNNNNGG	5 cut(s)	91, 157, 220, 261, 307
AgsI	TTSAA	3 cut(s)	187, 305, 359
AjnI	CCWGG	1 cut(s)	150
AluBI	AGCT	3 cut(s)	117, 335, 394
AluI	AGCT	3 cut(s)	117, 335, 394
Alw21I	GWGCWC	1 cut(s)	119
AlwI	GGATC	1 cut(s)	357
ApeKI	GCWGC	1 cut(s)	335
Asp700I	GAANNNNTTC	1 cut(s)	246
AspS9I	GGNCC	1 cut(s)	148
AsuC2I	CCSGG	1 cut(s)	10
AsuHPI	GGTGA	1 cut(s)	431
AvaII	GGWCC	1 cut(s)	148
BanI	GGYRCC	1 cut(s)	310
BanII	GRGCYC	1 cut(s)	119
Bbv12I	GWGCWC	1 cut(s)	119
BbvI	GCAGC	1 cut(s)	322
BccI	CCATC	2 cut(s)	215, 403
BciT130I	CCWGG	1 cut(s)	152
BcnI	CCSGG	1 cut(s)	10
BfaI	CTAG	1 cut(s)	282
BisI	GCNGC	1 cut(s)	336
BlsI	GCNGC	1 cut(s)	337
Bme1390I	CCNGG	2 cut(s)	10, 152
Bme18I	GGWCC	1 cut(s)	148
BmgT120I	GGNCC	1 cut(s)	148
BmiI	GGNNCC	1 cut(s)	312
BmrFI	CCNGG	2 cut(s)	10, 152
BmsI	GCATC	4 cut(s)	62, 174, 364, 388
BplI	GAGNNNNNCTC	2 cut(s)	281, 313
BpuEI	CTTGAG	2 cut(s)	65, 87
BpuMI	CCSGG	1 cut(s)	10
Bsa29I	ATCGAT	1 cut(s)	352
BsaHI	GRCGYC	1 cut(s)	95
BsaJI	CCNNGG	2 cut(s)	9, 255
Bsc4I	CCNNNNNNNGG	5 cut(s)	91, 157, 220, 261, 307
Bse1I	ACTGG	4 cut(s)	271, 314, 342, 388
BseBI	CCWGG	1 cut(s)	152
BseCI	ATCGAT	1 cut(s)	352
BseDI	CCNNGG	2 cut(s)	9, 255
BseGI	GGATG	1 cut(s)	210
BseLI	CCNNNNNNNGG	5 cut(s)	91, 157, 220, 261, 307
BseNI	ACTGG	4 cut(s)	271, 314, 342, 388
BseRI	GAGGAG	1 cut(s)	286
BseXI	GCAGC	1 cut(s)	322
BsgI	GTGCAG	1 cut(s)	425
BshNI	GGYRCC	1 cut(s)	310
BshVI	ATCGAT	1 cut(s)	352
BsiHKAI	GWGCWC	1 cut(s)	119
BsiSI	CCGG	1 cut(s)	9
BslFI	GGGAC	1 cut(s)	277
BslI	CCNNNNNNNGG	5 cut(s)	91, 157, 220, 261, 307
BsmFI	GGGAC	1 cut(s)	277
Bsp1286I	GDGCHC	1 cut(s)	119
Bsp143I	GATC	2 cut(s)	16, 349
BspDI	ATCGAT	1 cut(s)	352
BspLI	GGNNCC	1 cut(s)	312
BspPI	GGATC	1 cut(s)	357
BspT107I	GGYRCC	1 cut(s)	310
BsrI	ACTGG	4 cut(s)	271, 314, 342, 388
BssECI	CCNNGG	2 cut(s)	9, 255
BssMI	GATC	2 cut(s)	16, 349
BssNI	GRCGYC	1 cut(s)	95
Bst2UI	CCWGG	1 cut(s)	152
Bst4CI	ACNGT	1 cut(s)	246
Bst6I	CTCTTC	1 cut(s)	408
BstACI	GRCGYC	1 cut(s)	95
BstC8I	GCNNGC	1 cut(s)	51
BstF5I	GGATG	1 cut(s)	210
BstKTI	GATC	2 cut(s)	19, 352
BstMBI	GATC	2 cut(s)	16, 349
BstMWI	GCNNNNNNNGC	1 cut(s)	142
BstNI	CCWGG	1 cut(s)	152
BstSCI	CCNGG	2 cut(s)	8, 150
BstV1I	GCAGC	1 cut(s)	322
BstXI	CCANNNNNNTGG	2 cut(s)	127, 145
Bsu15I	ATCGAT	1 cut(s)	352
BsuTUI	ATCGAT	1 cut(s)	352
BtsCI	GGATG	1 cut(s)	210
Cac8I	GCNNGC	1 cut(s)	51
Cfr13I	GGNCC	1 cut(s)	148
ClaI	ATCGAT	1 cut(s)	352
CseI	GACGC	1 cut(s)	84
CsiI	ACCWGGT	1 cut(s)	150
CviAII	CATG	2 cut(s)	29, 86
CviJI	RGCY	6 cut(s)	84, 117, 136, 278, 335, 394
CviKI_1	RGCY	6 cut(s)	84, 117, 136, 278, 335, 394
DpnI	GATC	2 cut(s)	18, 351
DpnII	GATC	2 cut(s)	16, 349
Eam1104I	CTCTTC	1 cut(s)	408
EarI	CTCTTC	1 cut(s)	408
Ecl136II	GAGCTC	1 cut(s)	117
Eco24I	GRGCYC	1 cut(s)	119
Eco47I	GGWCC	1 cut(s)	148
Eco53kI	GAGCTC	1 cut(s)	117
EcoICRI	GAGCTC	1 cut(s)	117
EcoRII	CCWGG	1 cut(s)	150
EcoT38I	GRGCYC	1 cut(s)	119
FaeI	CATG	2 cut(s)	32, 89
FaiI	YATR	4 cut(s)	30, 87, 140, 439
FaqI	GGGAC	1 cut(s)	277
FatI	CATG	2 cut(s)	28, 85
Fnu4HI	GCNGC	1 cut(s)	336
FokI	GGATG	1 cut(s)	197
FriOI	GRGCYC	1 cut(s)	119
Fsp4HI	GCNGC	1 cut(s)	336
FspBI	CTAG	1 cut(s)	282
GluI	GCNGC	1 cut(s)	336
HapII	CCGG	1 cut(s)	9
HgaI	GACGC	1 cut(s)	84
Hin1I	GRCGYC	1 cut(s)	95
Hin1II	CATG	2 cut(s)	32, 89
HincII	GTYRAC	1 cut(s)	99
HindII	GTYRAC	1 cut(s)	99
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	1 cut(s)	9
HphI	GGTGA	1 cut(s)	431
Hpy166II	GTNNAC	1 cut(s)	99
Hpy188I	TCNGA	4 cut(s)	21, 67, 373, 432
Hpy188III	TCNNGA	1 cut(s)	214
Hpy8I	GTNNAC	1 cut(s)	99
HpyAV	CCTTC	2 cut(s)	311, 315
HpyCH4III	ACNGT	1 cut(s)	246
HpyCH4V	TGCA	2 cut(s)	364, 406
HpyF10VI	GCNNNNNNNGC	1 cut(s)	142
Hsp92I	GRCGYC	1 cut(s)	95
Hsp92II	CATG	2 cut(s)	32, 89
Kzo9I	GATC	2 cut(s)	16, 349
LmnI	GCTCC	1 cut(s)	122
Lsp1109I	GCAGC	1 cut(s)	322
LweI	GCATC	4 cut(s)	62, 174, 364, 388
MabI	ACCWGGT	1 cut(s)	150
MaeI	CTAG	1 cut(s)	282
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	2 cut(s)	18, 351
MboI	GATC	2 cut(s)	16, 349
MboII	GAAGA	1 cut(s)	425
MhlI	GDGCHC	1 cut(s)	119
MluCI	AATT	1 cut(s)	22
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	298
MnlI	CCTC	6 cut(s)	214, 265, 268, 307, 409, 415
MroXI	GAANNNNTTC	1 cut(s)	246
MspI	CCGG	1 cut(s)	9
MspR9I	CCNGG	2 cut(s)	10, 152
MvaI	CCWGG	1 cut(s)	152
MwoI	GCNNNNNNNGC	1 cut(s)	142
NciI	CCSGG	1 cut(s)	10
NdeII	GATC	2 cut(s)	16, 349
NlaIII	CATG	2 cut(s)	32, 89
NlaIV	GGNNCC	1 cut(s)	312
PdmI	GAANNNNTTC	1 cut(s)	246
PflMI	CCANNNNNTGG	2 cut(s)	91, 157
PkrI	GCNGC	1 cut(s)	337
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
Psp124BI	GAGCTC	1 cut(s)	119
Psp6I	CCWGG	1 cut(s)	150
PspGI	CCWGG	1 cut(s)	150
PspN4I	GGNNCC	1 cut(s)	312
PspPI	GGNCC	1 cut(s)	148
SacI	GAGCTC	1 cut(s)	119
SatI	GCNGC	1 cut(s)	336
Sau3AI	GATC	2 cut(s)	16, 349
Sau96I	GGNCC	1 cut(s)	148
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	2 cut(s)	10, 152
SduI	GDGCHC	1 cut(s)	119
SetI	ASST	5 cut(s)	119, 156, 225, 337, 396
SexAI	ACCWGGT	1 cut(s)	150
SfaNI	GCATC	4 cut(s)	62, 174, 364, 388
SinI	GGWCC	1 cut(s)	148
SmlI	CTYRAG	2 cut(s)	44, 102
SmoI	CTYRAG	2 cut(s)	44, 102
Sse9I	AATT	1 cut(s)	22
SspMI	CTAG	1 cut(s)	282
SstI	GAGCTC	1 cut(s)	119
StyD4I	CCNGG	2 cut(s)	8, 150
TaaI	ACNGT	1 cut(s)	246
TaqI	TCGA	3 cut(s)	230, 352, 396
TasI	AATT	1 cut(s)	22
TseI	GCWGC	1 cut(s)	335
TspDTI	ATGAA	1 cut(s)	216
Van91I	CCANNNNNTGG	2 cut(s)	91, 157
VpaK11BI	GGWCC	1 cut(s)	148
XmnI	GAANNNNTTC	1 cut(s)	246
XspI	CTAG	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.