RLG00000033699

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0008182
Physical Location & Seq
Forward (+)
31054084 .. 31055841
1758 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033699

Sequence Viewer

Length: 495 bp
ATGTTGGGAAAGCCCATATTGCTGGACCAGGTTTTGTTCGGCATCACAACAACAAAGGGTTTGAAAACTGCTGTTCCACTTCCCATCATCCCGACTGAGGTTTACTCGAAGTCATTGGATATGTTTCCTGCCTCAGTAGGGACTGGAAAGGAGGCTGCTACGGTGGAGTACTCCTCCCTTCAAGTGATGGAAGAGGGTGAGGCTGTTCAGATGGTGCTGCCTTCTGATGCAGAGGGAAAGGTGGAAGGTTGTTGGCTCCTCTTGCATTTACACCAATCCCCGGAAGAGAAGCTTGTTGACTCCGAATCGGTGCGAGACTTCGATAACGGTGGTCTGAATTTGGAGGTTGAGGGCAATGAAGTCAGCCGGGTAGGTGTTGGTGGCGTGGATGCCACCAACTTTAGCGGTGGTGAGGATTACAAATTGGGGCTTTTCAGCGGCAAAGAAGGACTCGAGGTCGGCGTGGGTGCAGAGAATGAGGTTGGTGAAACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

17.33

Weight (kDa)

4.28

Isoelectric Point (pI)

25.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 405, 438
AcsI RAATTY 1 cut(s) 337
AfaI GTAC 1 cut(s) 170
AfiI CCNNNNNNNGG 3 cut(s) 97, 138, 280
AgsI TTSAA 2 cut(s) 64, 182
AhdI GACNNNNNGTC 1 cut(s) 455
AjnI CCWGG 1 cut(s) 27
AluBI AGCT 1 cut(s) 292
AluI AGCT 1 cut(s) 292
Alw26I GTCTC 1 cut(s) 309
Ama87I CYCGRG 1 cut(s) 452
ApeKI GCWGC 2 cut(s) 155, 217
ApoI RAATTY 1 cut(s) 337
AspS9I GGNCC 1 cut(s) 25
AsuC2I CCSGG 2 cut(s) 281, 368
AsuHPI GGTGA 2 cut(s) 209, 422
AvaI CYCGRG 1 cut(s) 452
AvaII GGWCC 1 cut(s) 25
BbvI GCAGC 2 cut(s) 142, 204
BccI CCATC 3 cut(s) 92, 181, 205
BciT130I CCWGG 1 cut(s) 29
BcnI CCSGG 2 cut(s) 281, 368
BcoDI GTCTC 1 cut(s) 309
BisI GCNGC 3 cut(s) 156, 218, 439
BlsI GCNGC 3 cut(s) 157, 219, 440
BmcAI AGTACT 1 cut(s) 170
Bme1390I CCNGG 3 cut(s) 29, 281, 368
Bme18I GGWCC 1 cut(s) 25
BmeRI GACNNNNNGTC 1 cut(s) 455
BmeT110I CYCGRG 1 cut(s) 452
BmgT120I GGNCC 1 cut(s) 25
BmiI GGNNCC 1 cut(s) 257
BmrFI CCNGG 3 cut(s) 29, 281, 368
BmsI GCATC 3 cut(s) 51, 217, 379
BplI GAGNNNNNCTC 4 cut(s) 89, 121, 158, 190
BpuMI CCSGG 2 cut(s) 281, 368
BsaJI CCNNGG 1 cut(s) 279
Bsc4I CCNNNNNNNGG 3 cut(s) 97, 138, 280
Bse1I ACTGG 1 cut(s) 148
Bse3DI GCAATG 1 cut(s) 361
BseBI CCWGG 1 cut(s) 29
BseDI CCNNGG 1 cut(s) 279
BseGI GGATG 2 cut(s) 87, 394
BseLI CCNNNNNNNGG 3 cut(s) 97, 138, 280
BseMI GCAATG 1 cut(s) 361
BseMII CTCAG 2 cut(s) 87, 147
BseNI ACTGG 1 cut(s) 148
BseRI GAGGAG 2 cut(s) 163, 248
BseXI GCAGC 2 cut(s) 142, 204
BsgI GTGCAG 1 cut(s) 489
BsiHKCI CYCGRG 1 cut(s) 452
BsiSI CCGG 2 cut(s) 281, 367
BslFI GGGAC 1 cut(s) 154
BslI CCNNNNNNNGG 3 cut(s) 97, 138, 280
BsmAI GTCTC 1 cut(s) 309
BsmFI GGGAC 1 cut(s) 154
BsoBI CYCGRG 1 cut(s) 452
BspACI CCGC 2 cut(s) 405, 438
BspCNI CTCAG 2 cut(s) 88, 146
BspLI GGNNCC 1 cut(s) 257
BsrDI GCAATG 1 cut(s) 361
BsrI ACTGG 1 cut(s) 148
BssECI CCNNGG 1 cut(s) 279
Bst2UI CCWGG 1 cut(s) 29
Bst4CI ACNGT 2 cut(s) 163, 329
Bst6I CTCTTC 2 cut(s) 186, 279
BstDEI CTNAG 2 cut(s) 96, 133
BstF5I GGATG 2 cut(s) 87, 394
BstMAI GTCTC 1 cut(s) 309
BstMWI GCNNNNNNNGC 2 cut(s) 19, 262
BstNI CCWGG 1 cut(s) 29
BstSCI CCNGG 3 cut(s) 27, 279, 366
BstV1I GCAGC 2 cut(s) 142, 204
BstXI CCANNNNNNTGG 1 cut(s) 22
BtsCI GGATG 2 cut(s) 87, 394
Cfr13I GGNCC 1 cut(s) 25
CsiI ACCWGGT 1 cut(s) 27
Csp6I GTAC 1 cut(s) 169
CviJI RGCY 7 cut(s) 13, 155, 203, 256, 292, 366, 430
CviKI_1 RGCY 7 cut(s) 13, 155, 203, 256, 292, 366, 430
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 2 cut(s) 96, 133
DriI GACNNNNNGTC 1 cut(s) 455
Eam1104I CTCTTC 2 cut(s) 186, 279
Eam1105I GACNNNNNGTC 1 cut(s) 455
EarI CTCTTC 2 cut(s) 186, 279
Eco47I GGWCC 1 cut(s) 25
Eco88I CYCGRG 1 cut(s) 452
EcoRII CCWGG 1 cut(s) 27
FaiI YATR 2 cut(s) 17, 122
FalI AAGNNNNNCTT 2 cut(s) 276, 308
FaqI GGGAC 1 cut(s) 154
Fnu4HI GCNGC 3 cut(s) 156, 218, 439
FokI GGATG 2 cut(s) 74, 401
Fsp4HI GCNGC 3 cut(s) 156, 218, 439
GluI GCNGC 3 cut(s) 156, 218, 439
HapII CCGG 2 cut(s) 281, 367
HincII GTYRAC 1 cut(s) 298
HindII GTYRAC 1 cut(s) 298
HindIII AAGCTT 1 cut(s) 290
HinfI GANTC 3 cut(s) 299, 305, 450
HpaII CCGG 2 cut(s) 281, 367
HphI GGTGA 2 cut(s) 209, 422
Hpy166II GTNNAC 2 cut(s) 103, 298
Hpy188I TCNGA 4 cut(s) 210, 226, 304, 336
Hpy188III TCNNGA 1 cut(s) 91
Hpy8I GTNNAC 2 cut(s) 103, 298
HpyAV CCTTC 4 cut(s) 188, 231, 239, 440
HpyCH4III ACNGT 2 cut(s) 163, 329
HpyCH4V TGCA 3 cut(s) 230, 265, 470
HpyF10VI GCNNNNNNNGC 2 cut(s) 19, 262
HpyF3I CTNAG 2 cut(s) 96, 133
LmnI GCTCC 1 cut(s) 261
LpnPI CCDG 7 cut(s) 8, 14, 41, 129, 141, 294, 380
Lsp1109I GCAGC 2 cut(s) 142, 204
LweI GCATC 3 cut(s) 51, 217, 379
MabI ACCWGGT 1 cut(s) 27
MboII GAAGA 2 cut(s) 203, 296
MluCI AATT 2 cut(s) 337, 422
MlyI GAGTC 2 cut(s) 293, 444
MspA1I CMGCKG 1 cut(s) 438
MspI CCGG 2 cut(s) 281, 367
MspR9I CCNGG 3 cut(s) 29, 281, 368
MvaI CCWGG 1 cut(s) 29
MwoI GCNNNNNNNGC 2 cut(s) 19, 262
NciI CCSGG 2 cut(s) 281, 368
NlaIV GGNNCC 1 cut(s) 257
PaeR7I CTCGAG 1 cut(s) 452
PcsI WCGNNNNNNNCGW 1 cut(s) 459
PfeI GAWTC 1 cut(s) 305
PkrI GCNGC 3 cut(s) 157, 219, 440
PleI GAGTC 2 cut(s) 293, 444
PpsI GAGTC 2 cut(s) 293, 444
Psp6I CCWGG 1 cut(s) 27
PspGI CCWGG 1 cut(s) 27
PspN4I GGNNCC 1 cut(s) 257
PspPI GGNCC 1 cut(s) 25
PspXI VCTCGAGB 1 cut(s) 452
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
SatI GCNGC 3 cut(s) 156, 218, 439
Sau96I GGNCC 1 cut(s) 25
ScaI AGTACT 1 cut(s) 170
SchI GAGTC 2 cut(s) 293, 444
ScrFI CCNGG 3 cut(s) 29, 281, 368
SexAI ACCWGGT 1 cut(s) 27
SfaNI GCATC 3 cut(s) 51, 217, 379
Sfr274I CTCGAG 1 cut(s) 452
SinI GGWCC 1 cut(s) 25
SlaI CTCGAG 1 cut(s) 452
SmlI CTYRAG 1 cut(s) 452
SmoI CTYRAG 1 cut(s) 452
Sse9I AATT 2 cut(s) 337, 422
SsiI CCGC 2 cut(s) 405, 438
StyD4I CCNGG 3 cut(s) 27, 279, 366
TaaI ACNGT 2 cut(s) 163, 329
TaqI TCGA 3 cut(s) 107, 321, 453
TasI AATT 2 cut(s) 337, 422
TatI WGTACW 1 cut(s) 168
TauI GCSGC 1 cut(s) 441
TfiI GAWTC 1 cut(s) 305
TseI GCWGC 2 cut(s) 155, 217
TspDTI ATGAA 1 cut(s) 372
VpaK11BI GGWCC 1 cut(s) 25
XapI RAATTY 1 cut(s) 337
XhoI CTCGAG 1 cut(s) 452
ZrmI AGTACT 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.