Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0008182

Physical Location & Seq

Genomic Coordinates Reverse (-)

38058676 .. 38059089

Gene Structure 414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG297500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGAGGAACTTGAGGGAGGGGTCGTGGTTGATGAAGGCGGTTGACTCGATAAAAGAGCGAGCATCACCAATCCCAGTGAAAAGAGATCGATGCTCAGTAGGGTGCCTCCTGGGATTTCACTTCCTACCCCAGTACTTCCGCCGGCGTTTACTGCGAATCCGACAAGGTTATCGGCTCCTCTTGCATTTACACCAATCCCAAGAACAGAAGCTTGTTGACTCCAAATCGGTGCCAGGCGTCGATGTCGGTGGTCTGGATTTGGAGGTTGAGGGCGATGAAGTCAGCCAGGTAGGTGTTGGTGGCGTGGATGCCACCGACTTTAGTGGCGGCGAGGATTATGAATTGGGGCTTTTCGGCAGCGAAGAAGGACTCAAGGTCGGTGTGGGTGCGGAGGACGAGGTTGGTGAAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

137

Amino Acids

15.09

Weight (kDa)

5.08

Isoelectric Point (pI)

38.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008182)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0177201
rosa_laevigata	RLG00000002072 RLG00000003366 RLG00000015067 RLG00000019038 RLG00000022784 RLG00000030491 RLG00000033633 RLG00000033699
rosa_multiflora	Rmu_sc0000192.1_g000005 Rmu_sc0002080.1_g000002 Rmu_sc0005693.1_g000021 Rmu_sc0025598.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001760 Rroxscaffold_2G00114400
rosa_rugosa	Rorug04G0365600 Rorug04G0365700
rosa_samantha	Rh4BG150600 Rh4DG435600 Rh5BG297500 Rh7BG001200 Rh7BG003700 Rh7CG003600 Rh7DG003600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	102, 229
AciI	CCGC	4 cut(s)	38, 139, 327, 389
AcyI	GRCGYC	1 cut(s)	237
AfaI	GTAC	1 cut(s)	134
AhdI	GACNNNNNGTC	1 cut(s)	374
AjnI	CCWGG	3 cut(s)	108, 232, 285
AluBI	AGCT	1 cut(s)	211
AluI	AGCT	1 cut(s)	211
ApeKI	GCWGC	1 cut(s)	357
AsuHPI	GGTGA	1 cut(s)	57
BanI	GGYRCC	2 cut(s)	102, 229
BbvI	GCAGC	1 cut(s)	369
BciT130I	CCWGG	3 cut(s)	110, 234, 287
BisI	GCNGC	2 cut(s)	328, 358
BlsI	GCNGC	2 cut(s)	329, 359
BmcAI	AGTACT	1 cut(s)	134
Bme1390I	CCNGG	3 cut(s)	110, 234, 287
BmeRI	GACNNNNNGTC	1 cut(s)	374
BmiI	GGNNCC	3 cut(s)	104, 176, 231
BmrFI	CCNGG	3 cut(s)	110, 234, 287
BmrI	ACTGGG	2 cut(s)	68, 124
BmsI	GCATC	3 cut(s)	71, 80, 298
BmuI	ACTGGG	2 cut(s)	68, 124
BpuEI	CTTGAG	2 cut(s)	31, 356
Bsa29I	ATCGAT	1 cut(s)	88
BsaHI	GRCGYC	1 cut(s)	237
BsaJI	CCNNGG	1 cut(s)	109
BsaXI	ACNNNNNCTCC	2 cut(s)	8, 38
Bse118I	RCCGGY	1 cut(s)	141
Bse1I	ACTGG	2 cut(s)	74, 130
BseBI	CCWGG	3 cut(s)	110, 234, 287
BseCI	ATCGAT	1 cut(s)	88
BseDI	CCNNGG	1 cut(s)	109
BseGI	GGATG	1 cut(s)	313
BseMII	CTCAG	1 cut(s)	108
BseNI	ACTGG	2 cut(s)	74, 130
BseRI	GAGGAG	1 cut(s)	167
BseXI	GCAGC	1 cut(s)	369
BshNI	GGYRCC	2 cut(s)	102, 229
BshVI	ATCGAT	1 cut(s)	88
BsiSI	CCGG	1 cut(s)	142
Bsp143I	GATC	1 cut(s)	85
BspACI	CCGC	4 cut(s)	38, 139, 327, 389
BspCNI	CTCAG	1 cut(s)	107
BspDI	ATCGAT	1 cut(s)	88
BspLI	GGNNCC	3 cut(s)	104, 176, 231
BspT107I	GGYRCC	2 cut(s)	102, 229
BsrFI	RCCGGY	1 cut(s)	141
BsrI	ACTGG	2 cut(s)	74, 130
BssAI	RCCGGY	1 cut(s)	141
BssECI	CCNNGG	1 cut(s)	109
BssMI	GATC	1 cut(s)	85
BssNI	GRCGYC	1 cut(s)	237
Bst2UI	CCWGG	3 cut(s)	110, 234, 287
BstACI	GRCGYC	1 cut(s)	237
BstC8I	GCNNGC	2 cut(s)	60, 143
BstDEI	CTNAG	1 cut(s)	94
BstF5I	GGATG	1 cut(s)	313
BstKTI	GATC	1 cut(s)	88
BstMBI	GATC	1 cut(s)	85
BstMWI	GCNNNNNNNGC	2 cut(s)	151, 181
BstNI	CCWGG	3 cut(s)	110, 234, 287
BstSCI	CCNGG	3 cut(s)	108, 232, 285
BstV1I	GCAGC	1 cut(s)	369
Bsu15I	ATCGAT	1 cut(s)	88
BsuTUI	ATCGAT	1 cut(s)	88
BtgZI	GCGATG	1 cut(s)	288
BtsCI	GGATG	1 cut(s)	313
BtsIMutI	CAGTG	1 cut(s)	81
Cac8I	GCNNGC	2 cut(s)	60, 143
Cfr10I	RCCGGY	1 cut(s)	141
ClaI	ATCGAT	1 cut(s)	88
CseI	GACGC	1 cut(s)	226
Csp6I	GTAC	1 cut(s)	133
CviJI	RGCY	4 cut(s)	175, 211, 285, 349
CviKI_1	RGCY	4 cut(s)	175, 211, 285, 349
CviQI	GTAC	1 cut(s)	133
DdeI	CTNAG	1 cut(s)	94
DpnI	GATC	1 cut(s)	87
DpnII	GATC	1 cut(s)	85
DriI	GACNNNNNGTC	1 cut(s)	374
Eam1105I	GACNNNNNGTC	1 cut(s)	374
EciI	GGCGGA	1 cut(s)	128
EcoRII	CCWGG	3 cut(s)	108, 232, 285
FaiI	YATR	1 cut(s)	339
Fnu4HI	GCNGC	2 cut(s)	328, 358
FokI	GGATG	1 cut(s)	320
Fsp4HI	GCNGC	2 cut(s)	328, 358
GluI	GCNGC	2 cut(s)	328, 358
HapII	CCGG	1 cut(s)	142
HgaI	GACGC	1 cut(s)	226
Hin1I	GRCGYC	1 cut(s)	237
HincII	GTYRAC	2 cut(s)	43, 217
HindII	GTYRAC	2 cut(s)	43, 217
HindIII	AAGCTT	1 cut(s)	209
HinfI	GANTC	4 cut(s)	44, 156, 218, 369
HpaII	CCGG	1 cut(s)	142
HphI	GGTGA	1 cut(s)	57
Hpy166II	GTNNAC	3 cut(s)	43, 149, 217
Hpy188I	TCNGA	1 cut(s)	161
Hpy188III	TCNNGA	1 cut(s)	254
Hpy8I	GTNNAC	3 cut(s)	43, 149, 217
Hpy99I	CGWCG	1 cut(s)	242
HpyAV	CCTTC	2 cut(s)	28, 359
HpyCH4V	TGCA	1 cut(s)	184
HpyF10VI	GCNNNNNNNGC	2 cut(s)	151, 181
HpyF3I	CTNAG	1 cut(s)	94
Hsp92I	GRCGYC	1 cut(s)	237
KroI	GCCGGC	1 cut(s)	141
KroNI	GCCGGC	1 cut(s)	143
Kzo9I	GATC	1 cut(s)	85
LmnI	GCTCC	1 cut(s)	180
Lsp1109I	GCAGC	1 cut(s)	369
LweI	GCATC	3 cut(s)	71, 80, 298
MalI	GATC	1 cut(s)	87
MboI	GATC	1 cut(s)	85
MboII	GAAGA	1 cut(s)	374
MluCI	AATT	1 cut(s)	341
MlyI	GAGTC	3 cut(s)	38, 212, 363
MmeI	TCCRAC	1 cut(s)	184
MnlI	CCTC	9 cut(s)	6, 10, 116, 188, 256, 262, 325, 385, 391
MreI	CGCCGGCG	1 cut(s)	141
MroNI	GCCGGC	1 cut(s)	141
MspI	CCGG	1 cut(s)	142
MspR9I	CCNGG	3 cut(s)	110, 234, 287
MvaI	CCWGG	3 cut(s)	110, 234, 287
MwoI	GCNNNNNNNGC	2 cut(s)	151, 181
NaeI	GCCGGC	1 cut(s)	143
NdeII	GATC	1 cut(s)	85
NgoMIV	GCCGGC	1 cut(s)	141
NlaIV	GGNNCC	3 cut(s)	104, 176, 231
PdiI	GCCGGC	1 cut(s)	143
PfeI	GAWTC	1 cut(s)	156
PkrI	GCNGC	2 cut(s)	329, 359
PleI	GAGTC	3 cut(s)	38, 212, 363
PpsI	GAGTC	3 cut(s)	38, 212, 363
Psp6I	CCWGG	3 cut(s)	108, 232, 285
PspGI	CCWGG	3 cut(s)	108, 232, 285
PspN4I	GGNNCC	3 cut(s)	104, 176, 231
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
SatI	GCNGC	2 cut(s)	328, 358
Sau3AI	GATC	1 cut(s)	85
ScaI	AGTACT	1 cut(s)	134
SchI	GAGTC	3 cut(s)	38, 212, 363
ScrFI	CCNGG	3 cut(s)	110, 234, 287
SetI	ASST	8 cut(s)	169, 213, 267, 291, 295, 378, 402, 413
SfaNI	GCATC	3 cut(s)	71, 80, 298
SgrAI	CRCCGGYG	1 cut(s)	141
SmlI	CTYRAG	2 cut(s)	10, 371
SmoI	CTYRAG	2 cut(s)	10, 371
Sse9I	AATT	1 cut(s)	341
SsiI	CCGC	4 cut(s)	38, 139, 327, 389
StyD4I	CCNGG	3 cut(s)	108, 232, 285
TaqI	TCGA	3 cut(s)	47, 88, 240
TasI	AATT	1 cut(s)	341
TatI	WGTACW	1 cut(s)	132
TauI	GCSGC	1 cut(s)	330
TfiI	GAWTC	1 cut(s)	156
TscAI	CASTG	1 cut(s)	81
TseI	GCWGC	1 cut(s)	357
TspDTI	ATGAA	3 cut(s)	47, 291, 354
TspRI	CASTG	1 cut(s)	81
XcmI	CCANNNNNNNNNTGG	1 cut(s)	293
ZrmI	AGTACT	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.