Rh7BG003700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0008182
Physical Location & Seq
Reverse (-)
243713 .. 248581
4869 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG003700.1

Sequence Viewer

Length: 423 bp
ATGCAGCACTTTTTGGAGCTCTTCTTCTGCATAAACTCGTTGTCGACGGTTCCCTCCTTCCAGGTGACTTGCTTCTTCTTCCGATTCAGCCGCAAAACCAACGGCGAAGATGTGGATCCCGACGAAGATGACGACGACGCGTCCGGATTCTCAAGGGTGATCGTGGTCGTCACGCTCGTGCTCGCCGTCGGTGGAGCTCTGCCGCCGCCGCTCATGCTTGTTTCAATCCCTCACGGCTTGGCTTTTCTTCTTTTTATTGGGTCAGACGGAGCAGGATACCATTACTTTGCTGTCCAGCTGTGGGGGTTTCTACTTTCTCGTTTGAATGAACCAGCCAGAGTGATACAGTGGTTTGTGTACTTGGGAAGTCTCCTGAGGTCTACTGTGGCAAGATTTCAGATCAACAAGGCTAGTTGGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

15.71

Weight (kDa)

5.44

Isoelectric Point (pI)

28.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 211
AccI GTMKAC 2 cut(s) 44, 380
AccII CGCG 1 cut(s) 140
AccIII TCCGGA 1 cut(s) 143
AciI CCGC 4 cut(s) 91, 203, 206, 209
AclWI GGATC 2 cut(s) 110, 123
AfaI GTAC 1 cut(s) 359
AfiI CCNNNNNNNGG 1 cut(s) 301
AflIII ACRYGT 1 cut(s) 138
AgsI TTSAA 2 cut(s) 225, 325
AhdI GACNNNNNGTC 1 cut(s) 139
AjnI CCWGG 1 cut(s) 60
AleI CACNNNNGTG 1 cut(s) 176
AluBI AGCT 3 cut(s) 19, 197, 298
AluI AGCT 3 cut(s) 19, 197, 298
Alw21I GWGCWC 3 cut(s) 21, 183, 199
Alw26I GTCTC 1 cut(s) 374
AlwI GGATC 2 cut(s) 110, 123
Aor13HI TCCGGA 1 cut(s) 143
ApeKI GCWGC 1 cut(s) 4
AsuHPI GGTGA 2 cut(s) 76, 169
AxyI CCTNAGG 1 cut(s) 374
BaeI ACNNNNGTAYC 2 cut(s) 335, 368
BamHI GGATCC 1 cut(s) 115
BanII GRGCYC 2 cut(s) 21, 199
BauI CACGAG 1 cut(s) 176
Bbv12I GWGCWC 3 cut(s) 21, 183, 199
BbvI GCAGC 1 cut(s) 16
BceAI ACGGC 3 cut(s) 118, 170, 250
BciT130I CCWGG 1 cut(s) 62
BciVI GTATCC 1 cut(s) 269
BcoDI GTCTC 1 cut(s) 374
BfaI CTAG 1 cut(s) 411
BfuI GTATCC 1 cut(s) 269
BisI GCNGC 5 cut(s) 5, 91, 203, 206, 209
BlsI GCNGC 5 cut(s) 6, 92, 204, 207, 210
Bme1390I CCNGG 1 cut(s) 62
BmeRI GACNNNNNGTC 1 cut(s) 139
BmiI GGNNCC 2 cut(s) 51, 117
BmrFI CCNGG 1 cut(s) 62
BpuEI CTTGAG 1 cut(s) 136
BsaBI GATNNNNATC 1 cut(s) 114
BsaWI WCCGGW 1 cut(s) 143
Bsc4I CCNNNNNNNGG 1 cut(s) 301
Bse21I CCTNAGG 1 cut(s) 374
Bse8I GATNNNNATC 1 cut(s) 114
BseAI TCCGGA 1 cut(s) 143
BseBI CCWGG 1 cut(s) 62
BseGI GGATG 1 cut(s) 423
BseJI GATNNNNATC 1 cut(s) 114
BseLI CCNNNNNNNGG 1 cut(s) 301
BseMII CTCAG 1 cut(s) 365
BseXI GCAGC 1 cut(s) 16
Bsh1236I CGCG 1 cut(s) 140
BsiHKAI GWGCWC 3 cut(s) 21, 183, 199
BsiSI CCGG 1 cut(s) 144
BslI CCNNNNNNNGG 1 cut(s) 301
BsmAI GTCTC 1 cut(s) 374
Bsp1286I GDGCHC 3 cut(s) 21, 183, 199
Bsp13I TCCGGA 1 cut(s) 143
Bsp143I GATC 3 cut(s) 115, 159, 399
BspACI CCGC 4 cut(s) 91, 203, 206, 209
BspCNI CTCAG 1 cut(s) 366
BspEI TCCGGA 1 cut(s) 143
BspFNI CGCG 1 cut(s) 140
BspLI GGNNCC 2 cut(s) 51, 117
BspPI GGATC 2 cut(s) 110, 123
BspQI GCTCTTC 1 cut(s) 26
BsrBI CCGCTC 1 cut(s) 211
BssMI GATC 3 cut(s) 115, 159, 399
BssSI CACGAG 1 cut(s) 176
Bst2BI CACGAG 1 cut(s) 176
Bst2UI CCWGG 1 cut(s) 62
Bst4CI ACNGT 3 cut(s) 49, 348, 385
Bst6I CTCTTC 1 cut(s) 26
BstC8I GCNNGC 1 cut(s) 183
BstDEI CTNAG 1 cut(s) 374
BstF5I GGATG 1 cut(s) 423
BstFNI CGCG 1 cut(s) 140
BstKTI GATC 3 cut(s) 118, 162, 402
BstMAI GTCTC 1 cut(s) 374
BstMBI GATC 3 cut(s) 115, 159, 399
BstMWI GCNNNNNNNGC 2 cut(s) 208, 214
BstNI CCWGG 1 cut(s) 62
BstSCI CCNGG 1 cut(s) 60
BstUI CGCG 1 cut(s) 140
BstV1I GCAGC 1 cut(s) 16
BstX2I RGATCY 1 cut(s) 115
BstYI RGATCY 1 cut(s) 115
Bsu36I CCTNAGG 1 cut(s) 374
BsuI GTATCC 1 cut(s) 269
BtsCI GGATG 1 cut(s) 423
BtsIMutI CAGTG 1 cut(s) 353
Cac8I GCNNGC 1 cut(s) 183
CseI GACGC 2 cut(s) 129, 146
Csp6I GTAC 1 cut(s) 358
CviAII CATG 1 cut(s) 214
CviJI RGCY 8 cut(s) 19, 90, 197, 237, 242, 298, 335, 410
CviKI_1 RGCY 8 cut(s) 19, 90, 197, 237, 242, 298, 335, 410
CviQI GTAC 1 cut(s) 358
DdeI CTNAG 1 cut(s) 374
DpnI GATC 3 cut(s) 117, 161, 401
DpnII GATC 3 cut(s) 115, 159, 399
DriI GACNNNNNGTC 1 cut(s) 139
Eam1104I CTCTTC 1 cut(s) 26
Eam1105I GACNNNNNGTC 1 cut(s) 139
EarI CTCTTC 1 cut(s) 26
Ecl136II GAGCTC 2 cut(s) 19, 197
Eco24I GRGCYC 2 cut(s) 21, 199
Eco53kI GAGCTC 2 cut(s) 19, 197
Eco81I CCTNAGG 1 cut(s) 374
EcoICRI GAGCTC 2 cut(s) 19, 197
EcoRII CCWGG 1 cut(s) 60
EcoT38I GRGCYC 2 cut(s) 21, 199
FaeI CATG 1 cut(s) 217
FaiI YATR 2 cut(s) 32, 215
FatI CATG 1 cut(s) 213
FblI GTMKAC 2 cut(s) 44, 380
Fnu4HI GCNGC 5 cut(s) 5, 91, 203, 206, 209
FriOI GRGCYC 2 cut(s) 21, 199
Fsp4HI GCNGC 5 cut(s) 5, 91, 203, 206, 209
FspBI CTAG 1 cut(s) 411
GluI GCNGC 5 cut(s) 5, 91, 203, 206, 209
HapII CCGG 1 cut(s) 144
HgaI GACGC 2 cut(s) 129, 146
Hin1II CATG 1 cut(s) 217
HincII GTYRAC 1 cut(s) 45
HindII GTYRAC 1 cut(s) 45
HinfI GANTC 2 cut(s) 84, 147
HpaII CCGG 1 cut(s) 144
HphI GGTGA 2 cut(s) 76, 169
Hpy166II GTNNAC 3 cut(s) 45, 358, 381
Hpy188I TCNGA 3 cut(s) 83, 265, 399
Hpy188III TCNNGA 3 cut(s) 119, 144, 373
Hpy8I GTNNAC 3 cut(s) 45, 358, 381
Hpy99I CGWCG 5 cut(s) 49, 125, 137, 140, 191
HpyAV CCTTC 1 cut(s) 67
HpyCH4III ACNGT 3 cut(s) 49, 348, 385
HpyCH4V TGCA 2 cut(s) 4, 30
HpyF10VI GCNNNNNNNGC 2 cut(s) 208, 214
HpyF3I CTNAG 1 cut(s) 374
Hsp92II CATG 1 cut(s) 217
Kpn2I TCCGGA 1 cut(s) 143
Kzo9I GATC 3 cut(s) 115, 159, 399
LguI GCTCTTC 1 cut(s) 26
LmnI GCTCC 3 cut(s) 16, 194, 269
LpnPI CCDG 8 cut(s) 47, 74, 157, 258, 308, 345, 349, 386
Lsp1109I GCAGC 1 cut(s) 16
MaeI CTAG 1 cut(s) 411
MaeIII GTNAC 2 cut(s) 64, 169
MalI GATC 3 cut(s) 117, 161, 401
MbiI CCGCTC 1 cut(s) 211
MboI GATC 3 cut(s) 115, 159, 399
MboII GAAGA 7 cut(s) 13, 16, 67, 70, 119, 137, 239
MflI RGATCY 1 cut(s) 115
MhlI GDGCHC 3 cut(s) 21, 183, 199
MluI ACGCGT 1 cut(s) 138
MmeI TCCRAC 1 cut(s) 395
MnlI CCTC 3 cut(s) 64, 240, 369
MroI TCCGGA 1 cut(s) 143
MslI CAYNNNNRTG 1 cut(s) 176
MspA1I CMGCKG 1 cut(s) 298
MspI CCGG 1 cut(s) 144
MspR9I CCNGG 1 cut(s) 62
MvaI CCWGG 1 cut(s) 62
MvnI CGCG 1 cut(s) 140
MwoI GCNNNNNNNGC 2 cut(s) 208, 214
NdeII GATC 3 cut(s) 115, 159, 399
NlaIII CATG 1 cut(s) 217
NlaIV GGNNCC 2 cut(s) 51, 117
NmuCI GTSAC 2 cut(s) 64, 169
OliI CACNNNNGTG 1 cut(s) 176
PciSI GCTCTTC 1 cut(s) 26
PcsI WCGNNNNNNNCGW 3 cut(s) 129, 174, 183
PfeI GAWTC 2 cut(s) 84, 147
PkrI GCNGC 5 cut(s) 6, 92, 204, 207, 210
Psp124BI GAGCTC 2 cut(s) 21, 199
Psp6I CCWGG 1 cut(s) 60
PspGI CCWGG 1 cut(s) 60
PspN4I GGNNCC 2 cut(s) 51, 117
PsuI RGATCY 1 cut(s) 115
PvuII CAGCTG 1 cut(s) 298
RsaI GTAC 1 cut(s) 359
RsaNI GTAC 1 cut(s) 358
RseI CAYNNNNRTG 1 cut(s) 176
SacI GAGCTC 2 cut(s) 21, 199
SalI GTCGAC 1 cut(s) 43
SapI GCTCTTC 1 cut(s) 26
SatI GCNGC 5 cut(s) 5, 91, 203, 206, 209
Sau3AI GATC 3 cut(s) 115, 159, 399
ScrFI CCNGG 1 cut(s) 62
SduI GDGCHC 3 cut(s) 21, 183, 199
SetI ASST 5 cut(s) 21, 66, 199, 300, 380
SmiMI CAYNNNNRTG 1 cut(s) 176
SmlI CTYRAG 1 cut(s) 151
SmoI CTYRAG 1 cut(s) 151
SsiI CCGC 4 cut(s) 91, 203, 206, 209
SspMI CTAG 1 cut(s) 411
SstI GAGCTC 2 cut(s) 21, 199
StyD4I CCNGG 1 cut(s) 60
TaaI ACNGT 3 cut(s) 49, 348, 385
TaqI TCGA 1 cut(s) 44
TatI WGTACW 1 cut(s) 357
TauI GCSGC 4 cut(s) 93, 205, 208, 211
TfiI GAWTC 2 cut(s) 84, 147
TscAI CASTG 1 cut(s) 353
TseFI GTSAC 2 cut(s) 64, 169
TseI GCWGC 1 cut(s) 4
Tsp45I GTSAC 2 cut(s) 64, 169
TspDTI ATGAA 1 cut(s) 342
TspGWI ACGGA 1 cut(s) 282
TspRI CASTG 1 cut(s) 353
XmiI GTMKAC 2 cut(s) 44, 380
XspI CTAG 1 cut(s) 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.