RLG00000030491

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0008182
Physical Location & Seq
Reverse (-)
62411729 .. 62412451
723 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030491

Sequence Viewer

Length: 570 bp
ATGGAGACCGGGGTTGATCGGAATTGTCATGTTCTGGTTACACTAGAGCAGGTATCGAGTTTCTCTGCTACTACTGTTGGTAGCCATGTCGTGGCGTCAACTCAAGGGGTATTGAGCTCCAAGCTGTTGGGAAAGCCCACATTGCTGGACCAGGTTTTGGTCGGCATCACAACAGCAAAGGGTTTGAACACTGCTGTTCCACTTCCCATCATCCCGACTGAGGTTTCATTGAAATCATTAGAACTGTTTCCTGCCTCGGTAGGGACTGGTAAGGAGGCTGCTAGGGTGGAGTTCTCCTCCTTTCCAGTGGAGCCAGTTGGAAGGAAAAGAAAGGCTGCGATCAGTTTGGATCGTTTTGATGAACAAGAAGTGAAAAAGCTTCGAAGGTATAAGCGTCGTGGAAAATCCTTGATGAATGATTCAGACCTGCAATCATCTGAGGCTACAACTGGTAGTAAGCTCAATGCTGTGCAGATGGAAGAGGGTGAGGCAGGTCAGATGGTGATGCCTTCTGAAGCAGAGGGACAGGTGGAAGGTGATGCATCACCTTCTATAGCTAGTTTAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

190

Amino Acids

20.07

Weight (kDa)

5.79

Isoelectric Point (pI)

41.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 40, 435, 482
AccB7I CCANNNNNTGG 2 cut(s) 91, 157
AclWI GGATC 1 cut(s) 357
AcuI CTGAAG 1 cut(s) 534
AcyI GRCGYC 1 cut(s) 95
AfiI CCNNNNNNNGG 4 cut(s) 91, 157, 220, 261
AgsI TTSAA 2 cut(s) 187, 232
AjnI CCWGG 1 cut(s) 150
AluBI AGCT 5 cut(s) 117, 124, 379, 460, 557
AluI AGCT 5 cut(s) 117, 124, 379, 460, 557
Alw21I GWGCWC 1 cut(s) 119
AlwI GGATC 1 cut(s) 357
ApeKI GCWGC 2 cut(s) 278, 335
Asp700I GAANNNNTTC 1 cut(s) 246
AspS9I GGNCC 1 cut(s) 148
AsuC2I CCSGG 1 cut(s) 10
AsuHPI GGTGA 4 cut(s) 497, 514, 537, 548
AsuII TTCGAA 1 cut(s) 382
AvaII GGWCC 1 cut(s) 148
BanII GRGCYC 1 cut(s) 119
Bbv12I GWGCWC 1 cut(s) 119
BbvI GCAGC 2 cut(s) 265, 322
BccI CCATC 3 cut(s) 215, 469, 493
BciT130I CCWGG 1 cut(s) 152
BcnI CCSGG 1 cut(s) 10
BfaI CTAG 3 cut(s) 44, 282, 558
BfmI CTRYAG 1 cut(s) 552
BfuAI ACCTGC 3 cut(s) 40, 435, 482
BisI GCNGC 2 cut(s) 279, 336
BlsI GCNGC 2 cut(s) 280, 337
Bme1390I CCNGG 2 cut(s) 10, 152
Bme18I GGWCC 1 cut(s) 148
BmgT120I GGNCC 1 cut(s) 148
BmiI GGNNCC 1 cut(s) 312
BmrFI CCNGG 2 cut(s) 10, 152
BmsI GCATC 4 cut(s) 174, 495, 529, 551
BplI GAGNNNNNCTC 2 cut(s) 281, 313
Bpu14I TTCGAA 1 cut(s) 382
BpuEI CTTGAG 1 cut(s) 87
BpuMI CCSGG 1 cut(s) 10
BsaHI GRCGYC 1 cut(s) 95
BsaJI CCNNGG 2 cut(s) 9, 255
Bsc4I CCNNNNNNNGG 4 cut(s) 91, 157, 220, 261
Bse1I ACTGG 4 cut(s) 271, 305, 314, 454
Bse3DI GCAATG 1 cut(s) 140
BseBI CCWGG 1 cut(s) 152
BseDI CCNNGG 2 cut(s) 9, 255
BseGI GGATG 1 cut(s) 210
BseLI CCNNNNNNNGG 4 cut(s) 91, 157, 220, 261
BseMI GCAATG 1 cut(s) 140
BseMII CTCAG 2 cut(s) 210, 429
BseNI ACTGG 4 cut(s) 271, 305, 314, 454
BseRI GAGGAG 1 cut(s) 286
BseXI GCAGC 2 cut(s) 265, 322
BsgI GTGCAG 1 cut(s) 491
BsiHKAI GWGCWC 1 cut(s) 119
BsiSI CCGG 1 cut(s) 9
BslFI GGGAC 2 cut(s) 277, 537
BslI CCNNNNNNNGG 4 cut(s) 91, 157, 220, 261
BsmFI GGGAC 2 cut(s) 277, 537
Bsp119I TTCGAA 1 cut(s) 382
Bsp1286I GDGCHC 1 cut(s) 119
Bsp143I GATC 3 cut(s) 16, 339, 349
BspCNI CTCAG 2 cut(s) 211, 430
BspLI GGNNCC 1 cut(s) 312
BspMI ACCTGC 3 cut(s) 40, 435, 482
BspPI GGATC 1 cut(s) 357
BspT104I TTCGAA 1 cut(s) 382
BsrDI GCAATG 1 cut(s) 140
BsrI ACTGG 4 cut(s) 271, 305, 314, 454
BssECI CCNNGG 2 cut(s) 9, 255
BssMI GATC 3 cut(s) 16, 339, 349
BssNI GRCGYC 1 cut(s) 95
Bst2UI CCWGG 1 cut(s) 152
Bst4CI ACNGT 2 cut(s) 76, 246
Bst6I CTCTTC 1 cut(s) 474
BstACI GRCGYC 1 cut(s) 95
BstBI TTCGAA 1 cut(s) 382
BstDEI CTNAG 2 cut(s) 219, 438
BstF5I GGATG 1 cut(s) 210
BstKTI GATC 3 cut(s) 19, 342, 352
BstMBI GATC 3 cut(s) 16, 339, 349
BstMWI GCNNNNNNNGC 1 cut(s) 142
BstNI CCWGG 1 cut(s) 152
BstSCI CCNGG 2 cut(s) 8, 150
BstSFI CTRYAG 1 cut(s) 552
BstV1I GCAGC 2 cut(s) 265, 322
BstXI CCANNNNNNTGG 2 cut(s) 127, 145
BtsCI GGATG 1 cut(s) 210
BtsI GCAGTG 1 cut(s) 189
BtsIMutI CAGTG 2 cut(s) 189, 312
BveI ACCTGC 3 cut(s) 40, 435, 482
Cfr13I GGNCC 1 cut(s) 148
CseI GACGC 2 cut(s) 84, 383
CsiI ACCWGGT 1 cut(s) 150
CviAII CATG 2 cut(s) 29, 86
DdeI CTNAG 2 cut(s) 219, 438
DpnI GATC 3 cut(s) 18, 341, 351
DpnII GATC 3 cut(s) 16, 339, 349
Eam1104I CTCTTC 1 cut(s) 474
EarI CTCTTC 1 cut(s) 474
Ecl136II GAGCTC 1 cut(s) 117
Eco24I GRGCYC 1 cut(s) 119
Eco47I GGWCC 1 cut(s) 148
Eco53kI GAGCTC 1 cut(s) 117
Eco57I CTGAAG 1 cut(s) 534
EcoICRI GAGCTC 1 cut(s) 117
EcoRII CCWGG 1 cut(s) 150
EcoT22I ATGCAT 1 cut(s) 544
EcoT38I GRGCYC 1 cut(s) 119
FaeI CATG 2 cut(s) 32, 89
FaiI YATR 4 cut(s) 30, 87, 390, 554
FaqI GGGAC 2 cut(s) 277, 537
FatI CATG 2 cut(s) 28, 85
Fnu4HI GCNGC 2 cut(s) 279, 336
FokI GGATG 1 cut(s) 197
FriOI GRGCYC 1 cut(s) 119
Fsp4HI GCNGC 2 cut(s) 279, 336
FspBI CTAG 3 cut(s) 44, 282, 558
GluI GCNGC 2 cut(s) 279, 336
HapII CCGG 1 cut(s) 9
HgaI GACGC 2 cut(s) 84, 383
Hin1I GRCGYC 1 cut(s) 95
Hin1II CATG 2 cut(s) 32, 89
HincII GTYRAC 1 cut(s) 99
HindII GTYRAC 1 cut(s) 99
HindIII AAGCTT 1 cut(s) 377
HinfI GANTC 1 cut(s) 419
HpaII CCGG 1 cut(s) 9
HphI GGTGA 4 cut(s) 497, 514, 537, 548
Hpy166II GTNNAC 1 cut(s) 99
Hpy188I TCNGA 5 cut(s) 21, 424, 439, 498, 514
Hpy188III TCNNGA 1 cut(s) 214
Hpy8I GTNNAC 1 cut(s) 99
Hpy99I CGWCG 1 cut(s) 399
HpyAV CCTTC 5 cut(s) 315, 378, 519, 527, 558
HpyCH4III ACNGT 2 cut(s) 76, 246
HpyCH4V TGCA 3 cut(s) 430, 472, 542
HpyF10VI GCNNNNNNNGC 1 cut(s) 142
HpyF3I CTNAG 2 cut(s) 219, 438
Hsp92I GRCGYC 1 cut(s) 95
Hsp92II CATG 2 cut(s) 32, 89
Kzo9I GATC 3 cut(s) 16, 339, 349
LmnI GCTCC 2 cut(s) 122, 310
Lsp1109I GCAGC 2 cut(s) 265, 322
LweI GCATC 4 cut(s) 174, 495, 529, 551
MabI ACCWGGT 1 cut(s) 150
MaeI CTAG 3 cut(s) 44, 282, 558
MaeIII GTNAC 1 cut(s) 37
MalI GATC 3 cut(s) 18, 341, 351
MboI GATC 3 cut(s) 16, 339, 349
MboII GAAGA 1 cut(s) 491
MhlI GDGCHC 1 cut(s) 119
MluCI AATT 1 cut(s) 22
MmeI TCCRAC 1 cut(s) 298
MnlI CCTC 8 cut(s) 214, 265, 268, 307, 433, 475, 481, 514
Mph1103I ATGCAT 1 cut(s) 544
MroXI GAANNNNTTC 1 cut(s) 246
MseI TTAA 1 cut(s) 568
MspI CCGG 1 cut(s) 9
MspR9I CCNGG 2 cut(s) 10, 152
MvaI CCWGG 1 cut(s) 152
MwoI GCNNNNNNNGC 1 cut(s) 142
NciI CCSGG 1 cut(s) 10
NdeII GATC 3 cut(s) 16, 339, 349
NlaIII CATG 2 cut(s) 32, 89
NlaIV GGNNCC 1 cut(s) 312
NsiI ATGCAT 1 cut(s) 544
NspV TTCGAA 1 cut(s) 382
PdmI GAANNNNTTC 1 cut(s) 246
PfeI GAWTC 1 cut(s) 419
PflMI CCANNNNNTGG 2 cut(s) 91, 157
PkrI GCNGC 2 cut(s) 280, 337
Psp124BI GAGCTC 1 cut(s) 119
Psp6I CCWGG 1 cut(s) 150
PspGI CCWGG 1 cut(s) 150
PspN4I GGNNCC 1 cut(s) 312
PspPI GGNCC 1 cut(s) 148
SacI GAGCTC 1 cut(s) 119
SaqAI TTAA 1 cut(s) 568
SatI GCNGC 2 cut(s) 279, 336
Sau3AI GATC 3 cut(s) 16, 339, 349
Sau96I GGNCC 1 cut(s) 148
ScrFI CCNGG 2 cut(s) 10, 152
SduI GDGCHC 1 cut(s) 119
SexAI ACCWGGT 1 cut(s) 150
SfaNI GCATC 4 cut(s) 174, 495, 529, 551
SfcI CTRYAG 1 cut(s) 552
SfuI TTCGAA 1 cut(s) 382
SinI GGWCC 1 cut(s) 148
SmlI CTYRAG 1 cut(s) 102
SmoI CTYRAG 1 cut(s) 102
Sse9I AATT 1 cut(s) 22
SspMI CTAG 3 cut(s) 44, 282, 558
SstI GAGCTC 1 cut(s) 119
StyD4I CCNGG 2 cut(s) 8, 150
TaaI ACNGT 2 cut(s) 76, 246
TaqI TCGA 2 cut(s) 56, 382
TasI AATT 1 cut(s) 22
TfiI GAWTC 1 cut(s) 419
Tru1I TTAA 1 cut(s) 568
Tru9I TTAA 1 cut(s) 568
TscAI CASTG 2 cut(s) 196, 312
TseI GCWGC 2 cut(s) 278, 335
TspDTI ATGAA 3 cut(s) 216, 375, 428
TspRI CASTG 2 cut(s) 196, 312
Van91I CCANNNNNTGG 2 cut(s) 91, 157
VpaK11BI GGWCC 1 cut(s) 148
XmnI GAANNNNTTC 1 cut(s) 246
XspI CTAG 3 cut(s) 44, 282, 558
Zsp2I ATGCAT 1 cut(s) 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.