Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0008182

Physical Location & Seq

Genomic Coordinates Reverse (-)

323974 .. 332551

Gene Structure 8578 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG003600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGCAGCACTTTTTGGAGCTCTTCTTCTGCATAAACTCGTTGTCGACGGTTCCCTCCTTCCAGGTGACTTGCTTCTTCTTCCGATTCAGCCGCAAAACCAACGGCGAAGATGTGGATCCCGACGAAGATGACGCGTCCGGATTCTCAAGGGTGATCGTGGTGGTCACGCTCGCGCTCGTCGTCGGTGGGGCTCTGCCGCCGCCGCCGCTCATGCTTGCTTCAGCCTTCAATCAGGCAATTCCCTCACGGCTTGGCTTTTCTTCTTTTTATTGGGTTCTTGCAGGCGGAAAGGGAATTATTTATGGGTATCGTTCAATCCCAAACCTATTTGAACGAATCTCCCACCGCCAAAACAGAAGCATTGAAAGAAGGGATTATGATGTTGCTGTTATGTCTCTTTGTTATAGGGAGGTTCGGTCCGGCGGACAAGTTGGTGGCTCGATTCGAGTTTCTAGGGTTCTTGAGACGGAGCAGGATACCATTACTTTGCTGTCCAGCTGTGGGGGTTTCTACTTTCTACGATACCATTACTTTGCTGTCCAGCTGTGGGGGTTTCTACTTCCTCGTTTGAATCAACCAGCCAGAGTGATACAGTGGGACCCAAGCCACACTGTGCCGCTTTGTTTGCATTGGGACACTGGCAAGATTTCAGATCAACAAGGCTACTTGGATGTTGATGATGATCAAAGGGTGAAACTGTACAGGGGACCTCCAGGAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

240

Amino Acids

27.12

Weight (kDa)

6.95

Isoelectric Point (pI)

38.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008182)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0177201
rosa_laevigata	RLG00000002072 RLG00000003366 RLG00000015067 RLG00000019038 RLG00000022784 RLG00000030491 RLG00000033633 RLG00000033699
rosa_multiflora	Rmu_sc0000192.1_g000005 Rmu_sc0002080.1_g000002 Rmu_sc0005693.1_g000021 Rmu_sc0025598.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001760 Rroxscaffold_2G00114400
rosa_rugosa	Rorug04G0365600 Rorug04G0365700
rosa_samantha	Rh4BG150600 Rh4DG435600 Rh5BG297500 Rh7BG001200 Rh7BG003700 Rh7CG003600 Rh7DG003600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	208
AccI	GTMKAC	1 cut(s)	44
AccII	CGCG	2 cut(s)	134, 173
AccIII	TCCGGA	1 cut(s)	137
AciI	CCGC	9 cut(s)	91, 197, 200, 203, 206, 285, 346, 423, 617
AclWI	GGATC	2 cut(s)	110, 123
AcuI	CTGAAG	1 cut(s)	204
AdeI	CACNNNGTG	1 cut(s)	613
AfaI	GTAC	1 cut(s)	701
AfiI	CCNNNNNNNGG	3 cut(s)	501, 547, 716
AflIII	ACRYGT	1 cut(s)	132
AgsI	TTSAA	5 cut(s)	229, 315, 332, 365, 571
AjnI	CCWGG	2 cut(s)	60, 712
AluBI	AGCT	3 cut(s)	19, 498, 544
AluI	AGCT	3 cut(s)	19, 498, 544
Alw21I	GWGCWC	1 cut(s)	21
Alw26I	GTCTC	2 cut(s)	399, 458
AlwI	GGATC	2 cut(s)	110, 123
Aor13HI	TCCGGA	1 cut(s)	137
ApeKI	GCWGC	1 cut(s)	4
AspLEI	GCGC	1 cut(s)	175
AspS9I	GGNCC	3 cut(s)	417, 598, 707
AsuHPI	GGTGA	3 cut(s)	76, 163, 703
AvaII	GGWCC	3 cut(s)	417, 598, 707
BamHI	GGATCC	1 cut(s)	115
BanII	GRGCYC	2 cut(s)	21, 193
Bbv12I	GWGCWC	1 cut(s)	21
BbvI	GCAGC	1 cut(s)	16
BceAI	ACGGC	2 cut(s)	118, 263
BciT130I	CCWGG	2 cut(s)	62, 714
BciVI	GTATCC	1 cut(s)	469
BclI	TGATCA	1 cut(s)	682
BcoDI	GTCTC	2 cut(s)	399, 458
BfaI	CTAG	1 cut(s)	453
BfuI	GTATCC	1 cut(s)	469
BisI	GCNGC	7 cut(s)	5, 91, 197, 200, 203, 206, 617
BlsI	GCNGC	7 cut(s)	6, 92, 198, 201, 204, 207, 618
Bme1390I	CCNGG	2 cut(s)	62, 714
Bme18I	GGWCC	3 cut(s)	417, 598, 707
BmgT120I	GGNCC	3 cut(s)	417, 598, 707
BmiI	GGNNCC	5 cut(s)	51, 117, 599, 600, 708
BmrFI	CCNGG	2 cut(s)	62, 714
BpmI	CTGGAG	1 cut(s)	696
BpuEI	CTTGAG	2 cut(s)	130, 482
BsaBI	GATNNNNATC	2 cut(s)	114, 681
BsaWI	WCCGGW	1 cut(s)	137
BsaXI	ACNNNNNCTCC	2 cut(s)	401, 431
Bsc4I	CCNNNNNNNGG	3 cut(s)	501, 547, 716
Bse1I	ACTGG	1 cut(s)	643
Bse8I	GATNNNNATC	2 cut(s)	114, 681
BseAI	TCCGGA	1 cut(s)	137
BseBI	CCWGG	2 cut(s)	62, 714
BseGI	GGATG	1 cut(s)	676
BseJI	GATNNNNATC	2 cut(s)	114, 681
BseLI	CCNNNNNNNGG	3 cut(s)	501, 547, 716
BseNI	ACTGG	1 cut(s)	643
BseXI	GCAGC	1 cut(s)	16
Bsh1236I	CGCG	2 cut(s)	134, 173
BsiHKAI	GWGCWC	1 cut(s)	21
BsiSI	CCGG	2 cut(s)	138, 420
BslFI	GGGAC	2 cut(s)	611, 647
BslI	CCNNNNNNNGG	3 cut(s)	501, 547, 716
BsmAI	GTCTC	2 cut(s)	399, 458
BsmBI	CGTCTC	1 cut(s)	458
BsmFI	GGGAC	2 cut(s)	611, 647
Bsp1286I	GDGCHC	2 cut(s)	21, 193
Bsp13I	TCCGGA	1 cut(s)	137
Bsp1407I	TGTACA	1 cut(s)	699
Bsp143I	GATC	4 cut(s)	115, 153, 652, 682
BspACI	CCGC	9 cut(s)	91, 197, 200, 203, 206, 285, 346, 423, 617
BspEI	TCCGGA	1 cut(s)	137
BspFNI	CGCG	2 cut(s)	134, 173
BspLI	GGNNCC	5 cut(s)	51, 117, 599, 600, 708
BspPI	GGATC	2 cut(s)	110, 123
BspQI	GCTCTTC	1 cut(s)	26
BsrBI	CCGCTC	1 cut(s)	208
BsrGI	TGTACA	1 cut(s)	699
BsrI	ACTGG	1 cut(s)	643
BssMI	GATC	4 cut(s)	115, 153, 652, 682
Bst2UI	CCWGG	2 cut(s)	62, 714
Bst4CI	ACNGT	4 cut(s)	49, 594, 613, 699
Bst6I	CTCTTC	1 cut(s)	26
BstAUI	TGTACA	1 cut(s)	699
BstC8I	GCNNGC	3 cut(s)	171, 216, 283
BstENI	CCTNNNNNAGG	1 cut(s)	714
BstF5I	GGATG	1 cut(s)	676
BstFNI	CGCG	2 cut(s)	134, 173
BstHHI	GCGC	1 cut(s)	175
BstKTI	GATC	4 cut(s)	118, 156, 655, 685
BstMAI	GTCTC	2 cut(s)	399, 458
BstMBI	GATC	4 cut(s)	115, 153, 652, 682
BstMWI	GCNNNNNNNGC	4 cut(s)	202, 205, 211, 625
BstNI	CCWGG	2 cut(s)	62, 714
BstSCI	CCNGG	2 cut(s)	60, 712
BstUI	CGCG	2 cut(s)	134, 173
BstV1I	GCAGC	1 cut(s)	16
BstX2I	RGATCY	1 cut(s)	115
BstYI	RGATCY	1 cut(s)	115
BsuI	GTATCC	1 cut(s)	469
BtsCI	GGATG	1 cut(s)	676
BtsIMutI	CAGTG	3 cut(s)	599, 609, 636
Cac8I	GCNNGC	3 cut(s)	171, 216, 283
CfoI	GCGC	1 cut(s)	175
Cfr13I	GGNCC	3 cut(s)	417, 598, 707
CpoI	CGGWCCG	1 cut(s)	417
CseI	GACGC	2 cut(s)	123, 140
Csp6I	GTAC	1 cut(s)	700
CspI	CGGWCCG	1 cut(s)	417
CviAII	CATG	1 cut(s)	211
CviQI	GTAC	1 cut(s)	700
DpnI	GATC	4 cut(s)	117, 155, 654, 684
DpnII	GATC	4 cut(s)	115, 153, 652, 682
DraIII	CACNNNGTG	1 cut(s)	613
Eam1104I	CTCTTC	1 cut(s)	26
EarI	CTCTTC	1 cut(s)	26
EciI	GGCGGA	2 cut(s)	300, 438
Ecl136II	GAGCTC	1 cut(s)	19
Eco24I	GRGCYC	2 cut(s)	21, 193
Eco47I	GGWCC	3 cut(s)	417, 598, 707
Eco53kI	GAGCTC	1 cut(s)	19
Eco57I	CTGAAG	1 cut(s)	204
EcoICRI	GAGCTC	1 cut(s)	19
EcoNI	CCTNNNNNAGG	1 cut(s)	714
EcoO109I	RGGNCCY	2 cut(s)	598, 707
EcoRII	CCWGG	2 cut(s)	60, 712
EcoT38I	GRGCYC	2 cut(s)	21, 193
Esp3I	CGTCTC	1 cut(s)	458
FaeI	CATG	1 cut(s)	214
FaiI	YATR	6 cut(s)	32, 212, 303, 378, 392, 405
FaqI	GGGAC	2 cut(s)	611, 647
FatI	CATG	1 cut(s)	210
FbaI	TGATCA	1 cut(s)	682
FblI	GTMKAC	1 cut(s)	44
Fnu4HI	GCNGC	7 cut(s)	5, 91, 197, 200, 203, 206, 617
FokI	GGATG	1 cut(s)	683
FriOI	GRGCYC	2 cut(s)	21, 193
Fsp4HI	GCNGC	7 cut(s)	5, 91, 197, 200, 203, 206, 617
FspBI	CTAG	1 cut(s)	453
GlaI	GCGC	1 cut(s)	174
GluI	GCNGC	7 cut(s)	5, 91, 197, 200, 203, 206, 617
GsuI	CTGGAG	1 cut(s)	696
HapII	CCGG	2 cut(s)	138, 420
HgaI	GACGC	2 cut(s)	123, 140
HhaI	GCGC	1 cut(s)	175
Hin1II	CATG	1 cut(s)	214
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
HincII	GTYRAC	1 cut(s)	45
HindII	GTYRAC	1 cut(s)	45
HinfI	GANTC	5 cut(s)	84, 141, 336, 442, 571
HpaII	CCGG	2 cut(s)	138, 420
HphI	GGTGA	3 cut(s)	76, 163, 703
Hpy166II	GTNNAC	1 cut(s)	45
Hpy188I	TCNGA	2 cut(s)	83, 652
Hpy188III	TCNNGA	3 cut(s)	119, 138, 461
Hpy8I	GTNNAC	1 cut(s)	45
Hpy99I	CGWCG	4 cut(s)	49, 125, 182, 185
HpyAV	CCTTC	3 cut(s)	67, 235, 363
HpyCH4III	ACNGT	4 cut(s)	49, 594, 613, 699
HpyCH4V	TGCA	4 cut(s)	4, 30, 281, 628
HpyF10VI	GCNNNNNNNGC	4 cut(s)	202, 205, 211, 625
Hsp92II	CATG	1 cut(s)	214
HspAI	GCGC	1 cut(s)	173
KflI	GGGWCCC	1 cut(s)	598
Kpn2I	TCCGGA	1 cut(s)	137
Ksp22I	TGATCA	1 cut(s)	682
Kzo9I	GATC	4 cut(s)	115, 153, 652, 682
LguI	GCTCTTC	1 cut(s)	26
LmnI	GCTCC	2 cut(s)	16, 469
Lsp1109I	GCAGC	1 cut(s)	16
MaeI	CTAG	1 cut(s)	453
MaeIII	GTNAC	2 cut(s)	64, 163
MalI	GATC	4 cut(s)	117, 155, 654, 684
MbiI	CCGCTC	1 cut(s)	208
MboI	GATC	4 cut(s)	115, 153, 652, 682
MboII	GAAGA	7 cut(s)	13, 16, 67, 70, 119, 137, 252
MflI	RGATCY	1 cut(s)	115
MhlI	GDGCHC	2 cut(s)	21, 193
MluCI	AATT	2 cut(s)	237, 294
MluI	ACGCGT	1 cut(s)	132
MnlI	CCTC	6 cut(s)	64, 253, 403, 573, 710, 720
MroI	TCCGGA	1 cut(s)	137
MspA1I	CMGCKG	2 cut(s)	498, 544
MspI	CCGG	2 cut(s)	138, 420
MspR9I	CCNGG	2 cut(s)	62, 714
MvaI	CCWGG	2 cut(s)	62, 714
MvnI	CGCG	2 cut(s)	134, 173
MwoI	GCNNNNNNNGC	4 cut(s)	202, 205, 211, 625
NdeII	GATC	4 cut(s)	115, 153, 652, 682
NlaIII	CATG	1 cut(s)	214
NlaIV	GGNNCC	5 cut(s)	51, 117, 599, 600, 708
NmuCI	GTSAC	2 cut(s)	64, 163
PciSI	GCTCTTC	1 cut(s)	26
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PfeI	GAWTC	5 cut(s)	84, 141, 336, 442, 571
PfoI	TCCNGGA	1 cut(s)	712
PkrI	GCNGC	7 cut(s)	6, 92, 198, 201, 204, 207, 618
PpuMI	RGGWCCY	2 cut(s)	598, 707
Psp124BI	GAGCTC	1 cut(s)	21
Psp5II	RGGWCCY	2 cut(s)	598, 707
Psp6I	CCWGG	2 cut(s)	60, 712
PspGI	CCWGG	2 cut(s)	60, 712
PspN4I	GGNNCC	5 cut(s)	51, 117, 599, 600, 708
PspPI	GGNCC	3 cut(s)	417, 598, 707
PspPPI	RGGWCCY	2 cut(s)	598, 707
PsuI	RGATCY	1 cut(s)	115
PvuII	CAGCTG	2 cut(s)	498, 544
RsaI	GTAC	1 cut(s)	701
RsaNI	GTAC	1 cut(s)	700
Rsr2I	CGGWCCG	1 cut(s)	417
RsrII	CGGWCCG	1 cut(s)	417
SacI	GAGCTC	1 cut(s)	21
SalI	GTCGAC	1 cut(s)	43
SapI	GCTCTTC	1 cut(s)	26
SatI	GCNGC	7 cut(s)	5, 91, 197, 200, 203, 206, 617
Sau3AI	GATC	4 cut(s)	115, 153, 652, 682
Sau96I	GGNCC	3 cut(s)	417, 598, 707
ScrFI	CCNGG	2 cut(s)	62, 714
SduI	GDGCHC	2 cut(s)	21, 193
SetI	ASST	7 cut(s)	21, 66, 327, 414, 500, 546, 712
SinI	GGWCC	3 cut(s)	417, 598, 707
SmlI	CTYRAG	2 cut(s)	145, 461
SmoI	CTYRAG	2 cut(s)	145, 461
Sse9I	AATT	2 cut(s)	237, 294
SsiI	CCGC	9 cut(s)	91, 197, 200, 203, 206, 285, 346, 423, 617
SspMI	CTAG	1 cut(s)	453
SstI	GAGCTC	1 cut(s)	21
StyD4I	CCNGG	2 cut(s)	60, 712
TaaI	ACNGT	4 cut(s)	49, 594, 613, 699
TaqI	TCGA	3 cut(s)	44, 440, 445
TaqII	GACCGA	1 cut(s)	405
TasI	AATT	2 cut(s)	237, 294
TatI	WGTACW	1 cut(s)	699
TauI	GCSGC	6 cut(s)	93, 199, 202, 205, 208, 619
TfiI	GAWTC	5 cut(s)	84, 141, 336, 442, 571
TscAI	CASTG	3 cut(s)	599, 616, 643
TseFI	GTSAC	2 cut(s)	64, 163
TseI	GCWGC	1 cut(s)	4
Tsp45I	GTSAC	2 cut(s)	64, 163
TspGWI	ACGGA	1 cut(s)	482
TspRI	CASTG	3 cut(s)	599, 616, 643
VpaK11BI	GGWCC	3 cut(s)	417, 598, 707
XagI	CCTNNNNNAGG	1 cut(s)	714
XmiI	GTMKAC	1 cut(s)	44
XspI	CTAG	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.