Rmu_sc0002080.1_g000002

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002080.1
OG0008182
Physical Location & Seq
Forward (+)
1298 .. 2600
1303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002080.1_g000002.1.cds

Sequence Viewer

Length: 1230 bp
atggtagggcggttgttggcaccaaaagcaacgttgccgggattcaaaggtaccatatccaccatctggcatatcagggtagggctcactattcaggatgcaggagatcgctttgttttccagttcgagagtgaggctatatgcaataggattttgcatgggggaccctggttctatcaaaacaccatgttggtggtgggagagtatgacggcctgagtccagtggaggaggtgcctttgaacatgatggaaacctgggttgcagttaagggactacctttcgctctgagaaataagacggcgttgtccatggtgggatcgacgctcggaatggtgctccggttggatcctaacgttgtgaaaccggagatcacttttatctttgagaaagtcaagggcttttgtcgtgattgcgggttgtttgttcatgatgcccttggttgtgataagatgctgattaaggagaaggaggaaattcaggctaaaccgctggcgacggcgttggctggcttgtccttgacttcgggggtagatgttcgccctaatcccttggatgtttctggtatggggttggggatggagaccggggttgatcggaattgtcattctctggctacacttgagcatgcatcgggtttctctgatactactgctagtagccatgtcgtggggtcaactcaaggggaattgagctctaagatgttgggtaagcccctattgctggaccaggttttggccggcatcacaacagcaaagggattaaacactgctattccacttcccattatcccaactgaggtttactcgaaatcattggaactgtttcctgcctcggtagggactagcaaggaggctgctggggtggagttctcctcccttcaagtggtgccagttggaaggaaaagaaaaccggcgaatagcttggctcgatttggtaagaagtatttggctcttcctgactcaacacttgatgaggaggagaatgtttctttggtcctgcagcatggtaagttgctggtttcgccaaagaagaagaagattgggcgtcccaagggaagtaaaaacagaattaagaatgcagatgaccaagaagtgaaaaagcttcgaaggtataagcgtcgtggaaaacccttgatggatgagggtgaggcagttcagatggtgatgccttctgaagcagagggacaggtggaaggtgatgtgtcaccttctatagctagtttcgtttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

409

Amino Acids

44.24

Weight (kDa)

8.78

Isoelectric Point (pI)

33.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 304
Acc65I GGTACC 1 cut(s) 50
AccB1I GGYRCC 4 cut(s) 19, 50, 232, 886
AccB7I CCANNNNNTGG 3 cut(s) 66, 667, 733
AciI CCGC 3 cut(s) 10, 414, 488
AclI AACGTT 2 cut(s) 32, 354
AclWI GGATC 3 cut(s) 325, 341, 354
AcoI YGGCCR 1 cut(s) 735
AcsI RAATTY 1 cut(s) 474
AcuI CTGAAG 1 cut(s) 1194
AcyI GRCGYC 1 cut(s) 1045
AfaI GTAC 1 cut(s) 52
AfiI CCNNNNNNNGG 7 cut(s) 66, 667, 721, 733, 796, 837, 883
AgsI TTSAA 3 cut(s) 46, 241, 881
AjnI CCWGG 3 cut(s) 167, 254, 726
AjuI GAANNNNNNNTTGG 2 cut(s) 974, 1006
AluBI AGCT 4 cut(s) 693, 921, 1102, 1217
AluI AGCT 4 cut(s) 693, 921, 1102, 1217
Alw21I GWGCWC 2 cut(s) 339, 695
Alw26I GTCTC 1 cut(s) 575
AlwI GGATC 3 cut(s) 325, 341, 354
AoxI GGCC 2 cut(s) 211, 735
ApeKI GCWGC 2 cut(s) 854, 1000
ApoI RAATTY 1 cut(s) 474
Asp700I GAANNNNTTC 1 cut(s) 822
Asp718I GGTACC 1 cut(s) 50
AspS9I GGNCC 3 cut(s) 164, 724, 994
AsuC2I CCSGG 2 cut(s) 39, 586
AsuHPI GGTGA 4 cut(s) 1157, 1174, 1197, 1208
AsuII TTCGAA 1 cut(s) 1105
AvaII GGWCC 3 cut(s) 164, 724, 994
BamHI GGATCC 1 cut(s) 346
BanI GGYRCC 4 cut(s) 19, 50, 232, 886
BanII GRGCYC 2 cut(s) 87, 695
Bbv12I GWGCWC 2 cut(s) 339, 695
BbvI GCAGC 2 cut(s) 841, 1012
BccI CCATC 5 cut(s) 71, 241, 571, 1129, 1153
BceAI ACGGC 3 cut(s) 226, 315, 513
BciT130I CCWGG 3 cut(s) 169, 256, 728
BcnI CCSGG 2 cut(s) 39, 586
BcoDI GTCTC 1 cut(s) 575
BfaI CTAG 3 cut(s) 654, 843, 1218
BfmI CTRYAG 2 cut(s) 998, 1212
BisI GCNGC 2 cut(s) 855, 1001
BlsI GCNGC 2 cut(s) 856, 1002
Bme1390I CCNGG 5 cut(s) 39, 169, 256, 586, 728
Bme18I GGWCC 3 cut(s) 164, 724, 994
BmgT120I GGNCC 3 cut(s) 164, 724, 994
BmiI GGNNCC 7 cut(s) 21, 52, 165, 166, 234, 348, 888
BmrFI CCNGG 5 cut(s) 39, 169, 256, 586, 728
BmsI GCATC 6 cut(s) 88, 421, 441, 638, 750, 1155
BplI GAGNNNNNCTC 4 cut(s) 788, 820, 857, 889
Bpu14I TTCGAA 1 cut(s) 1105
BpuEI CTTGAG 2 cut(s) 641, 663
BpuMI CCSGG 2 cut(s) 39, 586
BsaHI GRCGYC 1 cut(s) 1045
BsaI GGTCTC 1 cut(s) 575
BsaJI CCNNGG 8 cut(s) 167, 255, 309, 436, 549, 585, 831, 1050
BsaWI WCCGGW 2 cut(s) 339, 364
Bsc4I CCNNNNNNNGG 7 cut(s) 66, 667, 721, 733, 796, 837, 883
Bse118I RCCGGY 2 cut(s) 737, 910
Bse1I ACTGG 3 cut(s) 121, 221, 890
BseBI CCWGG 3 cut(s) 169, 256, 728
BseDI CCNNGG 8 cut(s) 167, 255, 309, 436, 549, 585, 831, 1050
BseGI GGATG 4 cut(s) 103, 559, 582, 1144
BseLI CCNNNNNNNGG 7 cut(s) 66, 667, 721, 733, 796, 837, 883
BseMII CTCAG 3 cut(s) 206, 278, 786
BseNI ACTGG 3 cut(s) 121, 221, 890
BseRI GAGGAG 4 cut(s) 242, 862, 989, 992
BseXI GCAGC 2 cut(s) 841, 1012
BseYI CCCAGC 1 cut(s) 857
BshFI GGCC 2 cut(s) 213, 737
BshNI GGYRCC 4 cut(s) 19, 50, 232, 886
BsiHKAI GWGCWC 2 cut(s) 339, 695
BsiSI CCGG 6 cut(s) 38, 340, 365, 585, 738, 911
BslFI GGGAC 5 cut(s) 177, 285, 853, 1032, 1197
BslI CCNNNNNNNGG 7 cut(s) 66, 667, 721, 733, 796, 837, 883
BsmAI GTCTC 1 cut(s) 575
BsmFI GGGAC 5 cut(s) 177, 285, 853, 1032, 1197
BsmI GAATGC 1 cut(s) 1081
BsnI GGCC 2 cut(s) 213, 737
Bso31I GGTCTC 1 cut(s) 575
Bsp119I TTCGAA 1 cut(s) 1105
Bsp1286I GDGCHC 3 cut(s) 87, 339, 695
Bsp143I GATC 5 cut(s) 106, 317, 346, 369, 592
Bsp19I CCATGG 1 cut(s) 309
BspACI CCGC 3 cut(s) 10, 414, 488
BspANI GGCC 2 cut(s) 213, 737
BspCNI CTCAG 3 cut(s) 207, 279, 787
BspHI TCATGA 1 cut(s) 427
BspLI GGNNCC 7 cut(s) 21, 52, 165, 166, 234, 348, 888
BspMAI CTGCAG 1 cut(s) 1002
BspPI GGATC 3 cut(s) 325, 341, 354
BspQI GCTCTTC 1 cut(s) 957
BspT104I TTCGAA 1 cut(s) 1105
BspT107I GGYRCC 4 cut(s) 19, 50, 232, 886
BspTNI GGTCTC 1 cut(s) 575
BsrFI RCCGGY 2 cut(s) 737, 910
BsrI ACTGG 3 cut(s) 121, 221, 890
BssAI RCCGGY 2 cut(s) 737, 910
BssECI CCNNGG 8 cut(s) 167, 255, 309, 436, 549, 585, 831, 1050
BssMI GATC 5 cut(s) 106, 317, 346, 369, 592
BssNI GRCGYC 1 cut(s) 1045
BssT1I CCWWGG 4 cut(s) 309, 436, 549, 1050
Bst2UI CCWGG 3 cut(s) 169, 256, 728
Bst4CI ACNGT 1 cut(s) 822
Bst6I CTCTTC 1 cut(s) 957
BstACI GRCGYC 1 cut(s) 1045
BstBI TTCGAA 1 cut(s) 1105
BstC8I GCNNGC 4 cut(s) 492, 508, 627, 739
BstDEI CTNAG 4 cut(s) 215, 287, 696, 795
BstDSI CCRYGG 1 cut(s) 309
BstF5I GGATG 4 cut(s) 103, 559, 582, 1144
BstKTI GATC 5 cut(s) 109, 320, 349, 372, 595
BstMAI GTCTC 1 cut(s) 575
BstMBI GATC 5 cut(s) 106, 317, 346, 369, 592
BstMWI GCNNNNNNNGC 3 cut(s) 26, 718, 1021
BstNI CCWGG 3 cut(s) 169, 256, 728
BstNSI RCATGY 1 cut(s) 629
BstSCI CCNGG 5 cut(s) 37, 167, 254, 584, 726
BstSFI CTRYAG 2 cut(s) 998, 1212
BstV1I GCAGC 2 cut(s) 841, 1012
BstX2I RGATCY 1 cut(s) 346
BstXI CCANNNNNNTGG 1 cut(s) 193
BstYI RGATCY 1 cut(s) 346
BsuRI GGCC 2 cut(s) 213, 737
BtgI CCRYGG 1 cut(s) 309
BtsCI GGATG 4 cut(s) 103, 559, 582, 1144
BtsI GCAGTG 1 cut(s) 765
BtsIMutI CAGTG 2 cut(s) 228, 765
Cac8I GCNNGC 4 cut(s) 492, 508, 627, 739
CciI TCATGA 1 cut(s) 427
Cfr10I RCCGGY 2 cut(s) 737, 910
Cfr13I GGNCC 3 cut(s) 164, 724, 994
CseI GACGC 3 cut(s) 331, 1034, 1106
CsiI ACCWGGT 1 cut(s) 726
Csp6I GTAC 1 cut(s) 51
CviAII CATG 8 cut(s) 158, 187, 244, 310, 428, 626, 662, 1004
CviQI GTAC 1 cut(s) 51
DdeI CTNAG 4 cut(s) 215, 287, 696, 795
DpnI GATC 5 cut(s) 108, 319, 348, 371, 594
DpnII GATC 5 cut(s) 106, 317, 346, 369, 592
DrdI GACNNNNNNGTC 1 cut(s) 304
DseDI GACNNNNNNGTC 1 cut(s) 304
EaeI YGGCCR 1 cut(s) 735
Eam1104I CTCTTC 1 cut(s) 957
EarI CTCTTC 1 cut(s) 957
Ecl136II GAGCTC 1 cut(s) 693
Eco130I CCWWGG 4 cut(s) 309, 436, 549, 1050
Eco24I GRGCYC 2 cut(s) 87, 695
Eco31I GGTCTC 1 cut(s) 575
Eco47I GGWCC 3 cut(s) 164, 724, 994
Eco53kI GAGCTC 1 cut(s) 693
Eco57I CTGAAG 1 cut(s) 1194
EcoICRI GAGCTC 1 cut(s) 693
EcoO109I RGGNCCY 1 cut(s) 164
EcoRII CCWGG 3 cut(s) 167, 254, 726
EcoT14I CCWWGG 4 cut(s) 309, 436, 549, 1050
EcoT22I ATGCAT 1 cut(s) 631
EcoT38I GRGCYC 2 cut(s) 87, 695
ErhI CCWWGG 4 cut(s) 309, 436, 549, 1050
FaeI CATG 8 cut(s) 161, 190, 247, 313, 431, 629, 665, 1007
FaqI GGGAC 5 cut(s) 177, 285, 853, 1032, 1197
FatI CATG 8 cut(s) 157, 186, 243, 309, 427, 625, 661, 1003
FauI CCCGC 1 cut(s) 407
Fnu4HI GCNGC 2 cut(s) 855, 1001
FokI GGATG 4 cut(s) 110, 566, 589, 1151
FriOI GRGCYC 2 cut(s) 87, 695
Fsp4HI GCNGC 2 cut(s) 855, 1001
FspBI CTAG 3 cut(s) 654, 843, 1218
GluI GCNGC 2 cut(s) 855, 1001
GsaI CCCAGC 1 cut(s) 861
HaeIII GGCC 2 cut(s) 213, 737
HapII CCGG 6 cut(s) 38, 340, 365, 585, 738, 911
HgaI GACGC 3 cut(s) 331, 1034, 1106
Hin1I GRCGYC 1 cut(s) 1045
Hin1II CATG 8 cut(s) 161, 190, 247, 313, 431, 629, 665, 1007
HincII GTYRAC 1 cut(s) 675
HindII GTYRAC 1 cut(s) 675
HindIII AAGCTT 1 cut(s) 1100
HinfI GANTC 3 cut(s) 42, 217, 959
HpaII CCGG 6 cut(s) 38, 340, 365, 585, 738, 911
HphI GGTGA 4 cut(s) 1157, 1174, 1197, 1208
Hpy166II GTNNAC 2 cut(s) 675, 802
Hpy188I TCNGA 6 cut(s) 288, 329, 597, 643, 1158, 1174
Hpy188III TCNNGA 5 cut(s) 95, 127, 407, 428, 956
Hpy8I GTNNAC 2 cut(s) 675, 802
Hpy99I CGWCG 3 cut(s) 325, 499, 1122
HpyAV CCTTC 7 cut(s) 460, 887, 891, 1101, 1179, 1187, 1218
HpyCH4III ACNGT 1 cut(s) 822
HpyCH4IV ACGT 2 cut(s) 32, 354
HpyCH4V TGCA 7 cut(s) 101, 144, 157, 263, 629, 1000, 1079
HpyF10VI GCNNNNNNNGC 3 cut(s) 26, 718, 1021
HpyF3I CTNAG 4 cut(s) 215, 287, 696, 795
HpySE526I ACGT 2 cut(s) 32, 354
Hsp92I GRCGYC 1 cut(s) 1045
Hsp92II CATG 8 cut(s) 161, 190, 247, 313, 431, 629, 665, 1007
KflI GGGWCCC 1 cut(s) 164
KpnI GGTACC 1 cut(s) 54
KroI GCCGGC 1 cut(s) 737
KroNI GCCGGC 1 cut(s) 739
Kzo9I GATC 5 cut(s) 106, 317, 346, 369, 592
LguI GCTCTTC 1 cut(s) 957
LmnI GCTCC 1 cut(s) 342
Lsp1109I GCAGC 2 cut(s) 841, 1012
LweI GCATC 6 cut(s) 88, 421, 441, 638, 750, 1155
MabI ACCWGGT 1 cut(s) 726
MaeI CTAG 3 cut(s) 654, 843, 1218
MaeII ACGT 2 cut(s) 32, 354
MaeIII GTNAC 1 cut(s) 1203
MalI GATC 5 cut(s) 108, 319, 348, 371, 594
MboI GATC 5 cut(s) 106, 317, 346, 369, 592
MboII GAAGA 4 cut(s) 944, 1042, 1045, 1048
MflI RGATCY 1 cut(s) 346
MhlI GDGCHC 3 cut(s) 87, 339, 695
MluCI AATT 4 cut(s) 474, 598, 686, 1068
MlyI GAGTC 2 cut(s) 226, 953
MmeI TCCRAC 2 cut(s) 324, 874
Mph1103I ATGCAT 1 cut(s) 631
MroNI GCCGGC 1 cut(s) 737
MroXI GAANNNNTTC 1 cut(s) 822
MseI TTAA 5 cut(s) 267, 459, 761, 1071, 1228
MslI CAYNNNNRTG 1 cut(s) 191
MspA1I CMGCKG 1 cut(s) 490
MspI CCGG 6 cut(s) 38, 340, 365, 585, 738, 911
MspR9I CCNGG 5 cut(s) 39, 169, 256, 586, 728
Mva1269I GAATGC 1 cut(s) 1081
MvaI CCWGG 3 cut(s) 169, 256, 728
MwoI GCNNNNNNNGC 3 cut(s) 26, 718, 1021
NaeI GCCGGC 1 cut(s) 739
NciI CCSGG 2 cut(s) 39, 586
NcoI CCATGG 1 cut(s) 309
NdeII GATC 5 cut(s) 106, 317, 346, 369, 592
NgoMIV GCCGGC 1 cut(s) 737
NlaIII CATG 8 cut(s) 161, 190, 247, 313, 431, 629, 665, 1007
NlaIV GGNNCC 7 cut(s) 21, 52, 165, 166, 234, 348, 888
NmuCI GTSAC 1 cut(s) 1203
NsiI ATGCAT 1 cut(s) 631
NspI RCATGY 1 cut(s) 629
NspV TTCGAA 1 cut(s) 1105
PaeI GCATGC 1 cut(s) 629
PagI TCATGA 1 cut(s) 427
PciSI GCTCTTC 1 cut(s) 957
PctI GAATGC 1 cut(s) 1081
PdiI GCCGGC 1 cut(s) 739
PdmI GAANNNNTTC 1 cut(s) 822
PfeI GAWTC 1 cut(s) 42
PflMI CCANNNNNTGG 3 cut(s) 66, 667, 733
PkrI GCNGC 2 cut(s) 856, 1002
PleI GAGTC 2 cut(s) 225, 953
PpsI GAGTC 2 cut(s) 225, 953
PpuMI RGGWCCY 1 cut(s) 164
Psp124BI GAGCTC 1 cut(s) 695
Psp1406I AACGTT 2 cut(s) 32, 354
Psp5II RGGWCCY 1 cut(s) 164
Psp6I CCWGG 3 cut(s) 167, 254, 726
PspFI CCCAGC 1 cut(s) 857
PspGI CCWGG 3 cut(s) 167, 254, 726
PspN4I GGNNCC 7 cut(s) 21, 52, 165, 166, 234, 348, 888
PspPI GGNCC 3 cut(s) 164, 724, 994
PspPPI RGGWCCY 1 cut(s) 164
PstI CTGCAG 1 cut(s) 1002
PsuI RGATCY 1 cut(s) 346
RsaI GTAC 1 cut(s) 52
RsaNI GTAC 1 cut(s) 51
RseI CAYNNNNRTG 1 cut(s) 191
SacI GAGCTC 1 cut(s) 695
SapI GCTCTTC 1 cut(s) 957
SaqAI TTAA 5 cut(s) 267, 459, 761, 1071, 1228
SatI GCNGC 2 cut(s) 855, 1001
Sau3AI GATC 5 cut(s) 106, 317, 346, 369, 592
Sau96I GGNCC 3 cut(s) 164, 724, 994
SchI GAGTC 2 cut(s) 226, 953
ScrFI CCNGG 5 cut(s) 39, 169, 256, 586, 728
SduI GDGCHC 3 cut(s) 87, 339, 695
SexAI ACCWGGT 1 cut(s) 726
SfaNI GCATC 6 cut(s) 88, 421, 441, 638, 750, 1155
SfcI CTRYAG 2 cut(s) 998, 1212
SfuI TTCGAA 1 cut(s) 1105
SinI GGWCC 3 cut(s) 164, 724, 994
SmiMI CAYNNNNRTG 1 cut(s) 191
SmlI CTYRAG 2 cut(s) 620, 678
SmoI CTYRAG 2 cut(s) 620, 678
SphI GCATGC 1 cut(s) 629
Sse9I AATT 4 cut(s) 474, 598, 686, 1068
SsiI CCGC 3 cut(s) 10, 414, 488
SspMI CTAG 3 cut(s) 654, 843, 1218
SstI GAGCTC 1 cut(s) 695
StyD4I CCNGG 5 cut(s) 37, 167, 254, 584, 726
StyI CCWWGG 4 cut(s) 309, 436, 549, 1050
TaaI ACNGT 1 cut(s) 822
TaiI ACGT 2 cut(s) 35, 357
TaqI TCGA 5 cut(s) 126, 320, 806, 928, 1105
TasI AATT 4 cut(s) 474, 598, 686, 1068
TfiI GAWTC 1 cut(s) 42
Tru1I TTAA 5 cut(s) 267, 459, 761, 1071, 1228
Tru9I TTAA 5 cut(s) 267, 459, 761, 1071, 1228
TscAI CASTG 2 cut(s) 228, 772
TseFI GTSAC 1 cut(s) 1203
TseI GCWGC 2 cut(s) 854, 1000
Tsp45I GTSAC 1 cut(s) 1203
TspDTI ATGAA 1 cut(s) 416
TspRI CASTG 2 cut(s) 228, 772
Van91I CCANNNNNTGG 3 cut(s) 66, 667, 733
VpaK11BI GGWCC 3 cut(s) 164, 724, 994
XapI RAATTY 1 cut(s) 474
XceI RCATGY 1 cut(s) 629
XcmI CCANNNNNNNNNTGG 1 cut(s) 193
XmnI GAANNNNTTC 1 cut(s) 822
XspI CTAG 3 cut(s) 654, 843, 1218
Zsp2I ATGCAT 1 cut(s) 631
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.