Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000192.1

Orthogroup ID

OG0008182

Physical Location & Seq

Genomic Coordinates Reverse (-)

15374 .. 16516

Gene Structure 1143 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000192.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

atgttggtggtgggagagtatgacggcctgagtccagtagagatggtgcctttgaacatgatggaaacctgggttgcggttaagggactaccttttgctctgagaaataagacggtgttgtccatggtgggatcgaccctcggaagggtgctccggttggatcctaccactctaaaaagaaaagaagaagaacagcgaattaagattgcttttgatgtccgtcgccggattcgtgtctggaaggtttttgaattctctccagttgtgaaaccggagctcacttttatctttgagaaagtcaagggtttttgtcgtgattgcgggttatttgttcatgatgcccttggttgtgataagatgctgattaaggagaaggaggaaattcaggctaaaccacccgcgacggcgttggctggcttgtccttttcttcgagagtagatgttagccctaatcccttggatgtttctggtatggggttggggatggagaccggggttgatcggaattgtcatgctctggttacacttgagcaggcatcgggtttctctgatactactgctggtagccatgtcgtggtgtcaactcaaggggtattgagctccaagatgttgggtaagcccctattgctggaccaggttttggtcggcatcacaacagcaaagggattgaacactgctattccacttcccatcatcccaactgaggtttactcgaaatcattggatctatttcctgcctcggtagggactggtaaggaggctgctaggggggagttctcctcccttcaagtggtgccagttggaaggaaaagaaaagcggcaactagcttggctcgatttggtaagaagtctttggctcttcctgactcaacgcttgcagaggaggagaatgtttctttggtcctgcagtataaaaatgttaagttggtggtttcgccaaaaaagaagaagattgggcgtcccaagggaagtaaaaacagaattaagaatgcagatgaacaagaagtgaaaaagcttcgaagctataagcgtcgtggaaaacccttgatggatgagggtgaggcagttcagatggtgatgccttctgaagcagagggacaggtggaaggtgatgcgtcaccttctacagctagttcagtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4283 Exo_endo_phos_2 RNase_H RVT_1 zf-CCHC_4

Protein Analysis

380

Amino Acids

41.31

Weight (kDa)

9.47

Isoelectric Point (pI)

40.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008182)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0177201
rosa_laevigata	RLG00000002072 RLG00000003366 RLG00000015067 RLG00000019038 RLG00000022784 RLG00000030491 RLG00000033633 RLG00000033699
rosa_multiflora	Rmu_sc0000192.1_g000005 Rmu_sc0002080.1_g000002 Rmu_sc0005693.1_g000021 Rmu_sc0025598.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001760 Rroxscaffold_2G00114400
rosa_rugosa	Rorug04G0365600 Rorug04G0365700
rosa_samantha	Rh4BG150600 Rh4DG435600 Rh5BG297500 Rh7BG001200 Rh7BG003700 Rh7CG003600 Rh7DG003600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	118
AccB1I	GGYRCC	2 cut(s)	46, 793
AccB7I	CCANNNNNTGG	2 cut(s)	574, 640
AccII	CGCG	1 cut(s)	401
AciI	CCGC	4 cut(s)	77, 321, 399, 818
AclWI	GGATC	4 cut(s)	139, 155, 168, 732
AcsI	RAATTY	2 cut(s)	251, 381
AcuI	CTGAAG	1 cut(s)	1107
AcyI	GRCGYC	1 cut(s)	958
AfiI	CCNNNNNNNGG	8 cut(s)	144, 145, 574, 628, 640, 703, 744, 790
AgsI	TTSAA	4 cut(s)	55, 251, 670, 788
AjnI	CCWGG	2 cut(s)	68, 633
AjuI	GAANNNNNNNTTGG	2 cut(s)	881, 913
AluBI	AGCT	6 cut(s)	277, 600, 828, 1015, 1023, 1130
AluI	AGCT	6 cut(s)	277, 600, 828, 1015, 1023, 1130
Alw21I	GWGCWC	3 cut(s)	153, 279, 602
Alw26I	GTCTC	1 cut(s)	482
AlwI	GGATC	4 cut(s)	139, 155, 168, 732
AoxI	GGCC	1 cut(s)	25
ApeKI	GCWGC	1 cut(s)	761
ApoI	RAATTY	2 cut(s)	251, 381
AspS9I	GGNCC	2 cut(s)	631, 901
AsuC2I	CCSGG	1 cut(s)	493
AsuHPI	GGTGA	4 cut(s)	1070, 1087, 1110, 1121
AsuII	TTCGAA	1 cut(s)	1018
AvaII	GGWCC	2 cut(s)	631, 901
BamHI	GGATCC	1 cut(s)	160
BanI	GGYRCC	2 cut(s)	46, 793
BanII	GRGCYC	2 cut(s)	279, 602
Bbv12I	GWGCWC	3 cut(s)	153, 279, 602
BbvI	GCAGC	1 cut(s)	748
BccI	CCATC	6 cut(s)	37, 55, 478, 698, 1042, 1066
BceAI	ACGGC	2 cut(s)	40, 420
BciT130I	CCWGG	2 cut(s)	70, 635
BcnI	CCSGG	1 cut(s)	493
BcoDI	GTCTC	1 cut(s)	482
BfaI	CTAG	3 cut(s)	765, 825, 1131
BfmI	CTRYAG	2 cut(s)	905, 1125
BisI	GCNGC	2 cut(s)	762, 819
BlsI	GCNGC	2 cut(s)	763, 820
Bme1390I	CCNGG	3 cut(s)	70, 493, 635
Bme18I	GGWCC	2 cut(s)	631, 901
BmgT120I	GGNCC	2 cut(s)	631, 901
BmiI	GGNNCC	3 cut(s)	48, 162, 795
BmrFI	CCNGG	3 cut(s)	70, 493, 635
BmsI	GCATC	6 cut(s)	328, 348, 545, 657, 1068, 1102
BplI	GAGNNNNNCTC	4 cut(s)	695, 727, 764, 796
BpmI	CTGGAG	1 cut(s)	243
Bpu14I	TTCGAA	1 cut(s)	1018
BpuEI	CTTGAG	2 cut(s)	548, 570
BpuMI	CCSGG	1 cut(s)	493
BsaHI	GRCGYC	1 cut(s)	958
BsaI	GGTCTC	1 cut(s)	482
BsaJI	CCNNGG	8 cut(s)	69, 123, 139, 343, 456, 492, 738, 963
BsaWI	WCCGGW	2 cut(s)	153, 271
Bsc4I	CCNNNNNNNGG	8 cut(s)	144, 145, 574, 628, 640, 703, 744, 790
Bse1I	ACTGG	4 cut(s)	35, 260, 754, 797
BseBI	CCWGG	2 cut(s)	70, 635
BseDI	CCNNGG	8 cut(s)	69, 123, 139, 343, 456, 492, 738, 963
BseGI	GGATG	4 cut(s)	466, 489, 693, 1057
BseLI	CCNNNNNNNGG	8 cut(s)	144, 145, 574, 628, 640, 703, 744, 790
BseMII	CTCAG	3 cut(s)	20, 92, 693
BseNI	ACTGG	4 cut(s)	35, 260, 754, 797
BseRI	GAGGAG	3 cut(s)	769, 896, 899
BseXI	GCAGC	1 cut(s)	748
Bsh1236I	CGCG	1 cut(s)	401
BshFI	GGCC	1 cut(s)	27
BshNI	GGYRCC	2 cut(s)	46, 793
BsiHKAI	GWGCWC	3 cut(s)	153, 279, 602
BsiSI	CCGG	4 cut(s)	154, 226, 272, 492
BslFI	GGGAC	4 cut(s)	99, 760, 945, 1110
BslI	CCNNNNNNNGG	8 cut(s)	144, 145, 574, 628, 640, 703, 744, 790
BsmAI	GTCTC	1 cut(s)	482
BsmFI	GGGAC	4 cut(s)	99, 760, 945, 1110
BsmI	GAATGC	1 cut(s)	994
BsnI	GGCC	1 cut(s)	27
Bso31I	GGTCTC	1 cut(s)	482
Bsp119I	TTCGAA	1 cut(s)	1018
Bsp1286I	GDGCHC	3 cut(s)	153, 279, 602
Bsp143I	GATC	4 cut(s)	131, 160, 499, 724
Bsp19I	CCATGG	1 cut(s)	123
BspACI	CCGC	4 cut(s)	77, 321, 399, 818
BspANI	GGCC	1 cut(s)	27
BspCNI	CTCAG	3 cut(s)	21, 93, 694
BspFNI	CGCG	1 cut(s)	401
BspHI	TCATGA	1 cut(s)	334
BspLI	GGNNCC	3 cut(s)	48, 162, 795
BspMAI	CTGCAG	1 cut(s)	909
BspPI	GGATC	4 cut(s)	139, 155, 168, 732
BspQI	GCTCTTC	1 cut(s)	864
BspT104I	TTCGAA	1 cut(s)	1018
BspT107I	GGYRCC	2 cut(s)	46, 793
BspTNI	GGTCTC	1 cut(s)	482
BsrI	ACTGG	4 cut(s)	35, 260, 754, 797
BssECI	CCNNGG	8 cut(s)	69, 123, 139, 343, 456, 492, 738, 963
BssMI	GATC	4 cut(s)	131, 160, 499, 724
BssNI	GRCGYC	1 cut(s)	958
BssT1I	CCWWGG	4 cut(s)	123, 343, 456, 963
Bst2UI	CCWGG	2 cut(s)	70, 635
Bst4CI	ACNGT	1 cut(s)	115
Bst6I	CTCTTC	1 cut(s)	864
BstACI	GRCGYC	1 cut(s)	958
BstBI	TTCGAA	1 cut(s)	1018
BstC8I	GCNNGC	3 cut(s)	415, 534, 876
BstDEI	CTNAG	3 cut(s)	29, 101, 702
BstDSI	CCRYGG	1 cut(s)	123
BstF5I	GGATG	4 cut(s)	466, 489, 693, 1057
BstFNI	CGCG	1 cut(s)	401
BstKTI	GATC	4 cut(s)	134, 163, 502, 727
BstMAI	GTCTC	1 cut(s)	482
BstMBI	GATC	4 cut(s)	131, 160, 499, 724
BstMWI	GCNNNNNNNGC	1 cut(s)	625
BstNI	CCWGG	2 cut(s)	70, 635
BstSCI	CCNGG	3 cut(s)	68, 491, 633
BstSFI	CTRYAG	2 cut(s)	905, 1125
BstUI	CGCG	1 cut(s)	401
BstV1I	GCAGC	1 cut(s)	748
BstX2I	RGATCY	2 cut(s)	160, 724
BstXI	CCANNNNNNTGG	1 cut(s)	610
BstYI	RGATCY	2 cut(s)	160, 724
BsuRI	GGCC	1 cut(s)	27
BtgI	CCRYGG	1 cut(s)	123
BtsCI	GGATG	4 cut(s)	466, 489, 693, 1057
BtsI	GCAGTG	1 cut(s)	672
BtsIMutI	CAGTG	1 cut(s)	672
Cac8I	GCNNGC	3 cut(s)	415, 534, 876
CciI	TCATGA	1 cut(s)	334
Cfr13I	GGNCC	2 cut(s)	631, 901
CseI	GACGC	3 cut(s)	947, 1019, 1104
CsiI	ACCWGGT	1 cut(s)	633
CviAII	CATG	5 cut(s)	58, 124, 335, 512, 569
DdeI	CTNAG	3 cut(s)	29, 101, 702
DpnI	GATC	4 cut(s)	133, 162, 501, 726
DpnII	GATC	4 cut(s)	131, 160, 499, 724
DrdI	GACNNNNNNGTC	1 cut(s)	118
DseDI	GACNNNNNNGTC	1 cut(s)	118
Eam1104I	CTCTTC	1 cut(s)	864
EarI	CTCTTC	1 cut(s)	864
Ecl136II	GAGCTC	2 cut(s)	277, 600
Eco130I	CCWWGG	4 cut(s)	123, 343, 456, 963
Eco24I	GRGCYC	2 cut(s)	279, 602
Eco31I	GGTCTC	1 cut(s)	482
Eco47I	GGWCC	2 cut(s)	631, 901
Eco53kI	GAGCTC	2 cut(s)	277, 600
Eco57I	CTGAAG	1 cut(s)	1107
EcoICRI	GAGCTC	2 cut(s)	277, 600
EcoRI	GAATTC	1 cut(s)	251
EcoRII	CCWGG	2 cut(s)	68, 633
EcoT14I	CCWWGG	4 cut(s)	123, 343, 456, 963
EcoT38I	GRGCYC	2 cut(s)	279, 602
ErhI	CCWWGG	4 cut(s)	123, 343, 456, 963
FaeI	CATG	5 cut(s)	61, 127, 338, 515, 572
FaiI	YATR	9 cut(s)	21, 59, 125, 336, 473, 513, 570, 912, 1026
FaqI	GGGAC	4 cut(s)	99, 760, 945, 1110
FatI	CATG	5 cut(s)	57, 123, 334, 511, 568
FauI	CCCGC	2 cut(s)	314, 406
Fnu4HI	GCNGC	2 cut(s)	762, 819
FokI	GGATG	4 cut(s)	473, 496, 680, 1064
FriOI	GRGCYC	2 cut(s)	279, 602
Fsp4HI	GCNGC	2 cut(s)	762, 819
FspBI	CTAG	3 cut(s)	765, 825, 1131
GluI	GCNGC	2 cut(s)	762, 819
GsuI	CTGGAG	1 cut(s)	243
HaeIII	GGCC	1 cut(s)	27
HapII	CCGG	4 cut(s)	154, 226, 272, 492
HgaI	GACGC	3 cut(s)	947, 1019, 1104
Hin1I	GRCGYC	1 cut(s)	958
Hin1II	CATG	5 cut(s)	61, 127, 338, 515, 572
HincII	GTYRAC	1 cut(s)	582
HindII	GTYRAC	1 cut(s)	582
HindIII	AAGCTT	1 cut(s)	1013
HinfI	GANTC	3 cut(s)	31, 229, 866
HpaII	CCGG	4 cut(s)	154, 226, 272, 492
HphI	GGTGA	4 cut(s)	1070, 1087, 1110, 1121
Hpy166II	GTNNAC	2 cut(s)	582, 709
Hpy188I	TCNGA	6 cut(s)	102, 143, 504, 550, 1071, 1087
Hpy188III	TCNNGA	5 cut(s)	238, 314, 335, 432, 863
Hpy8I	GTNNAC	2 cut(s)	582, 709
Hpy99I	CGWCG	3 cut(s)	225, 406, 1035
HpyAV	CCTTC	8 cut(s)	138, 235, 367, 794, 798, 1092, 1100, 1131
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4V	TGCA	3 cut(s)	878, 907, 992
HpyF10VI	GCNNNNNNNGC	1 cut(s)	625
HpyF3I	CTNAG	3 cut(s)	29, 101, 702
Hsp92I	GRCGYC	1 cut(s)	958
Hsp92II	CATG	5 cut(s)	61, 127, 338, 515, 572
Kzo9I	GATC	4 cut(s)	131, 160, 499, 724
LguI	GCTCTTC	1 cut(s)	864
LmnI	GCTCC	3 cut(s)	156, 274, 605
Lsp1109I	GCAGC	1 cut(s)	748
LweI	GCATC	6 cut(s)	328, 348, 545, 657, 1068, 1102
MabI	ACCWGGT	1 cut(s)	633
MaeI	CTAG	3 cut(s)	765, 825, 1131
MaeIII	GTNAC	2 cut(s)	520, 1116
MalI	GATC	4 cut(s)	133, 162, 501, 726
MboI	GATC	4 cut(s)	131, 160, 499, 724
MboII	GAAGA	6 cut(s)	197, 200, 420, 851, 958, 961
MflI	RGATCY	2 cut(s)	160, 724
MhlI	GDGCHC	3 cut(s)	153, 279, 602
MluCI	AATT	5 cut(s)	198, 251, 381, 505, 981
MlyI	GAGTC	2 cut(s)	40, 860
MmeI	TCCRAC	2 cut(s)	138, 781
MseI	TTAA	6 cut(s)	81, 201, 366, 921, 984, 1141
MspI	CCGG	4 cut(s)	154, 226, 272, 492
MspR9I	CCNGG	3 cut(s)	70, 493, 635
Mva1269I	GAATGC	1 cut(s)	994
MvaI	CCWGG	2 cut(s)	70, 635
MvnI	CGCG	1 cut(s)	401
MwoI	GCNNNNNNNGC	1 cut(s)	625
NciI	CCSGG	1 cut(s)	493
NcoI	CCATGG	1 cut(s)	123
NdeII	GATC	4 cut(s)	131, 160, 499, 724
NlaIII	CATG	5 cut(s)	61, 127, 338, 515, 572
NlaIV	GGNNCC	3 cut(s)	48, 162, 795
NmuCI	GTSAC	1 cut(s)	1116
NspV	TTCGAA	1 cut(s)	1018
PagI	TCATGA	1 cut(s)	334
PciSI	GCTCTTC	1 cut(s)	864
PcsI	WCGNNNNNNNCGW	1 cut(s)	229
PctI	GAATGC	1 cut(s)	994
PfeI	GAWTC	1 cut(s)	229
PflMI	CCANNNNNTGG	2 cut(s)	574, 640
PkrI	GCNGC	2 cut(s)	763, 820
PleI	GAGTC	2 cut(s)	39, 860
PpsI	GAGTC	2 cut(s)	39, 860
Psp124BI	GAGCTC	2 cut(s)	279, 602
Psp6I	CCWGG	2 cut(s)	68, 633
PspGI	CCWGG	2 cut(s)	68, 633
PspN4I	GGNNCC	3 cut(s)	48, 162, 795
PspPI	GGNCC	2 cut(s)	631, 901
PstI	CTGCAG	1 cut(s)	909
PsuI	RGATCY	2 cut(s)	160, 724
SacI	GAGCTC	2 cut(s)	279, 602
SapI	GCTCTTC	1 cut(s)	864
SaqAI	TTAA	6 cut(s)	81, 201, 366, 921, 984, 1141
SatI	GCNGC	2 cut(s)	762, 819
Sau3AI	GATC	4 cut(s)	131, 160, 499, 724
Sau96I	GGNCC	2 cut(s)	631, 901
SchI	GAGTC	2 cut(s)	40, 860
ScrFI	CCNGG	3 cut(s)	70, 493, 635
SduI	GDGCHC	3 cut(s)	153, 279, 602
SexAI	ACCWGGT	1 cut(s)	633
SfaNI	GCATC	6 cut(s)	328, 348, 545, 657, 1068, 1102
SfcI	CTRYAG	2 cut(s)	905, 1125
SfuI	TTCGAA	1 cut(s)	1018
SinI	GGWCC	2 cut(s)	631, 901
SmlI	CTYRAG	2 cut(s)	527, 585
SmoI	CTYRAG	2 cut(s)	527, 585
Sse9I	AATT	5 cut(s)	198, 251, 381, 505, 981
SsiI	CCGC	4 cut(s)	77, 321, 399, 818
SspMI	CTAG	3 cut(s)	765, 825, 1131
SstI	GAGCTC	2 cut(s)	279, 602
StyD4I	CCNGG	3 cut(s)	68, 491, 633
StyI	CCWWGG	4 cut(s)	123, 343, 456, 963
TaaI	ACNGT	1 cut(s)	115
TaqI	TCGA	5 cut(s)	134, 431, 713, 835, 1018
TasI	AATT	5 cut(s)	198, 251, 381, 505, 981
TauI	GCSGC	1 cut(s)	821
TfiI	GAWTC	1 cut(s)	229
Tru1I	TTAA	6 cut(s)	81, 201, 366, 921, 984, 1141
Tru9I	TTAA	6 cut(s)	81, 201, 366, 921, 984, 1141
TscAI	CASTG	1 cut(s)	679
TseFI	GTSAC	1 cut(s)	1116
TseI	GCWGC	1 cut(s)	761
Tsp45I	GTSAC	1 cut(s)	1116
TspDTI	ATGAA	2 cut(s)	323, 1011
TspGWI	ACGGA	1 cut(s)	209
TspRI	CASTG	1 cut(s)	679
Van91I	CCANNNNNTGG	2 cut(s)	574, 640
VpaK11BI	GGWCC	2 cut(s)	631, 901
XapI	RAATTY	2 cut(s)	251, 381
XspI	CTAG	3 cut(s)	765, 825, 1131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.