RLG00000015067

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0008182
Physical Location & Seq
Reverse (-)
61167343 .. 61169552
2210 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015067

Sequence Viewer

Length: 450 bp
ATGGAGATCGGGGTTGATCGGAATTGTCATGCTCTGTTTACACTTGAGCAGGTATCGGGTTTCTCTGATACTCCTGCTGGTAGCCATGTTGTGGCGTCACCTCAAGGGGTATTGAGCTCCAAGCTGTTGGGAAAGCCCACATTGCTGGACCAGGTTTTGGTCAGCATCACAACAGCAAAGGGTTTGAAAACTGCTATTCCACTTCCCATCATCCCGTCTGAGGTTTCATCGAAATCATTAGAACTGTTTCCTGCCCCGGTAGGGACTGGTAAGGAGGCTGCTAGGGTGGAGTTCTCCTCCCTTCAAGTGGTGCCAGTTGGAAGGAAAAGAAAGGCTACGATCAGTTTGGATCTATTTGATGTTGTGCATCATCACTCCCTAAACTTCTTCCTTCATGGAGCTAGGAGAAAGCATTCGAGAAACCCAAGGAAACAGAAAGCCAAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

16.11

Weight (kDa)

10.2

Isoelectric Point (pI)

36.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 40
AccB1I GGYRCC 1 cut(s) 310
AccB7I CCANNNNNTGG 2 cut(s) 91, 157
AclWI GGATC 1 cut(s) 357
AcyI GRCGYC 1 cut(s) 95
AfiI CCNNNNNNNGG 5 cut(s) 91, 157, 220, 261, 307
AgsI TTSAA 2 cut(s) 187, 305
AjnI CCWGG 1 cut(s) 150
AluBI AGCT 3 cut(s) 117, 124, 401
AluI AGCT 3 cut(s) 117, 124, 401
Alw21I GWGCWC 1 cut(s) 119
AlwI GGATC 1 cut(s) 357
ApeKI GCWGC 1 cut(s) 278
Asp700I GAANNNNTTC 2 cut(s) 246, 412
AspS9I GGNCC 1 cut(s) 148
AsuC2I CCSGG 1 cut(s) 257
AsuHPI GGTGA 1 cut(s) 90
AvaII GGWCC 1 cut(s) 148
BanI GGYRCC 1 cut(s) 310
BanII GRGCYC 1 cut(s) 119
Bbv12I GWGCWC 1 cut(s) 119
BbvI GCAGC 1 cut(s) 265
BccI CCATC 1 cut(s) 215
BciT130I CCWGG 1 cut(s) 152
BcnI CCSGG 1 cut(s) 257
BfaI CTAG 2 cut(s) 282, 402
BfuAI ACCTGC 1 cut(s) 40
BisI GCNGC 1 cut(s) 279
BlsI GCNGC 1 cut(s) 280
Bme1390I CCNGG 2 cut(s) 152, 257
Bme18I GGWCC 1 cut(s) 148
BmgT120I GGNCC 1 cut(s) 148
BmiI GGNNCC 1 cut(s) 312
BmrFI CCNGG 2 cut(s) 152, 257
BmsI GCATC 2 cut(s) 174, 376
BplI GAGNNNNNCTC 2 cut(s) 281, 313
BpuEI CTTGAG 2 cut(s) 65, 87
BpuMI CCSGG 1 cut(s) 257
BsaHI GRCGYC 1 cut(s) 95
BsaJI CCNNGG 2 cut(s) 255, 425
Bsc4I CCNNNNNNNGG 5 cut(s) 91, 157, 220, 261, 307
Bse1I ACTGG 2 cut(s) 271, 314
Bse3DI GCAATG 1 cut(s) 140
BseBI CCWGG 1 cut(s) 152
BseDI CCNNGG 2 cut(s) 255, 425
BseGI GGATG 1 cut(s) 210
BseLI CCNNNNNNNGG 5 cut(s) 91, 157, 220, 261, 307
BseMI GCAATG 1 cut(s) 140
BseMII CTCAG 1 cut(s) 210
BseNI ACTGG 2 cut(s) 271, 314
BseRI GAGGAG 1 cut(s) 286
BseXI GCAGC 1 cut(s) 265
BshNI GGYRCC 1 cut(s) 310
BsiHKAI GWGCWC 1 cut(s) 119
BsiSI CCGG 1 cut(s) 257
BslFI GGGAC 1 cut(s) 277
BslI CCNNNNNNNGG 5 cut(s) 91, 157, 220, 261, 307
BsmFI GGGAC 1 cut(s) 277
BsmI GAATGC 1 cut(s) 412
Bsp1286I GDGCHC 1 cut(s) 119
Bsp143I GATC 4 cut(s) 6, 16, 339, 349
BspCNI CTCAG 1 cut(s) 211
BspLI GGNNCC 1 cut(s) 312
BspMI ACCTGC 1 cut(s) 40
BspPI GGATC 1 cut(s) 357
BspT107I GGYRCC 1 cut(s) 310
BsrDI GCAATG 1 cut(s) 140
BsrI ACTGG 2 cut(s) 271, 314
BssECI CCNNGG 2 cut(s) 255, 425
BssMI GATC 4 cut(s) 6, 16, 339, 349
BssNI GRCGYC 1 cut(s) 95
BssT1I CCWWGG 1 cut(s) 425
Bst2UI CCWGG 1 cut(s) 152
Bst4CI ACNGT 1 cut(s) 246
BstACI GRCGYC 1 cut(s) 95
BstDEI CTNAG 1 cut(s) 219
BstF5I GGATG 1 cut(s) 210
BstKTI GATC 4 cut(s) 9, 19, 342, 352
BstMBI GATC 4 cut(s) 6, 16, 339, 349
BstMWI GCNNNNNNNGC 1 cut(s) 142
BstNI CCWGG 1 cut(s) 152
BstSCI CCNGG 2 cut(s) 150, 255
BstV1I GCAGC 1 cut(s) 265
BstX2I RGATCY 1 cut(s) 349
BstXI CCANNNNNNTGG 2 cut(s) 127, 145
BstYI RGATCY 1 cut(s) 349
BtsCI GGATG 1 cut(s) 210
BveI ACCTGC 1 cut(s) 40
Cfr13I GGNCC 1 cut(s) 148
CseI GACGC 1 cut(s) 84
CsiI ACCWGGT 1 cut(s) 150
CviAII CATG 3 cut(s) 29, 86, 395
CviJI RGCY 8 cut(s) 84, 117, 124, 136, 278, 335, 401, 440
CviKI_1 RGCY 8 cut(s) 84, 117, 124, 136, 278, 335, 401, 440
DdeI CTNAG 1 cut(s) 219
DpnI GATC 4 cut(s) 8, 18, 341, 351
DpnII GATC 4 cut(s) 6, 16, 339, 349
Ecl136II GAGCTC 1 cut(s) 117
Eco130I CCWWGG 1 cut(s) 425
Eco24I GRGCYC 1 cut(s) 119
Eco47I GGWCC 1 cut(s) 148
Eco53kI GAGCTC 1 cut(s) 117
EcoICRI GAGCTC 1 cut(s) 117
EcoRII CCWGG 1 cut(s) 150
EcoT14I CCWWGG 1 cut(s) 425
EcoT38I GRGCYC 1 cut(s) 119
ErhI CCWWGG 1 cut(s) 425
FaeI CATG 3 cut(s) 32, 89, 398
FaiI YATR 3 cut(s) 30, 87, 396
FaqI GGGAC 1 cut(s) 277
FatI CATG 3 cut(s) 28, 85, 394
Fnu4HI GCNGC 1 cut(s) 279
FokI GGATG 1 cut(s) 197
FriOI GRGCYC 1 cut(s) 119
Fsp4HI GCNGC 1 cut(s) 279
FspBI CTAG 2 cut(s) 282, 402
GluI GCNGC 1 cut(s) 279
HapII CCGG 1 cut(s) 257
HgaI GACGC 1 cut(s) 84
Hin1I GRCGYC 1 cut(s) 95
Hin1II CATG 3 cut(s) 32, 89, 398
HpaII CCGG 1 cut(s) 257
HphI GGTGA 1 cut(s) 90
Hpy166II GTNNAC 1 cut(s) 39
Hpy188I TCNGA 3 cut(s) 21, 67, 220
Hpy188III TCNNGA 1 cut(s) 417
Hpy8I GTNNAC 1 cut(s) 39
HpyAV CCTTC 3 cut(s) 311, 315, 401
HpyCH4III ACNGT 1 cut(s) 246
HpyCH4V TGCA 1 cut(s) 367
HpyF10VI GCNNNNNNNGC 1 cut(s) 142
HpyF3I CTNAG 1 cut(s) 219
Hsp92I GRCGYC 1 cut(s) 95
Hsp92II CATG 3 cut(s) 32, 89, 398
Kzo9I GATC 4 cut(s) 6, 16, 339, 349
LmnI GCTCC 2 cut(s) 122, 398
Lsp1109I GCAGC 1 cut(s) 265
LweI GCATC 2 cut(s) 174, 376
MabI ACCWGGT 1 cut(s) 150
MaeI CTAG 2 cut(s) 282, 402
MaeIII GTNAC 1 cut(s) 96
MalI GATC 4 cut(s) 8, 18, 341, 351
MboI GATC 4 cut(s) 6, 16, 339, 349
MboII GAAGA 1 cut(s) 379
MflI RGATCY 1 cut(s) 349
MhlI GDGCHC 1 cut(s) 119
MluCI AATT 1 cut(s) 22
MmeI TCCRAC 1 cut(s) 298
MnlI CCTC 4 cut(s) 111, 214, 268, 307
MroXI GAANNNNTTC 2 cut(s) 246, 412
MspI CCGG 1 cut(s) 257
MspR9I CCNGG 2 cut(s) 152, 257
Mva1269I GAATGC 1 cut(s) 412
MvaI CCWGG 1 cut(s) 152
MwoI GCNNNNNNNGC 1 cut(s) 142
NciI CCSGG 1 cut(s) 257
NdeII GATC 4 cut(s) 6, 16, 339, 349
NlaIII CATG 3 cut(s) 32, 89, 398
NlaIV GGNNCC 1 cut(s) 312
NmuCI GTSAC 1 cut(s) 96
PctI GAATGC 1 cut(s) 412
PdmI GAANNNNTTC 2 cut(s) 246, 412
PflMI CCANNNNNTGG 2 cut(s) 91, 157
PkrI GCNGC 1 cut(s) 280
Psp124BI GAGCTC 1 cut(s) 119
Psp6I CCWGG 1 cut(s) 150
PspGI CCWGG 1 cut(s) 150
PspN4I GGNNCC 1 cut(s) 312
PspPI GGNCC 1 cut(s) 148
PsuI RGATCY 1 cut(s) 349
SacI GAGCTC 1 cut(s) 119
SatI GCNGC 1 cut(s) 279
Sau3AI GATC 4 cut(s) 6, 16, 339, 349
Sau96I GGNCC 1 cut(s) 148
ScrFI CCNGG 2 cut(s) 152, 257
SduI GDGCHC 1 cut(s) 119
SetI ASST 7 cut(s) 54, 103, 119, 126, 156, 225, 403
SexAI ACCWGGT 1 cut(s) 150
SfaNI GCATC 2 cut(s) 174, 376
SinI GGWCC 1 cut(s) 148
SmlI CTYRAG 2 cut(s) 44, 102
SmoI CTYRAG 2 cut(s) 44, 102
Sse9I AATT 1 cut(s) 22
SspMI CTAG 2 cut(s) 282, 402
SstI GAGCTC 1 cut(s) 119
StyD4I CCNGG 2 cut(s) 150, 255
StyI CCWWGG 1 cut(s) 425
TaaI ACNGT 1 cut(s) 246
TaqI TCGA 2 cut(s) 230, 416
TasI AATT 1 cut(s) 22
TseFI GTSAC 1 cut(s) 96
TseI GCWGC 1 cut(s) 278
Tsp45I GTSAC 1 cut(s) 96
TspDTI ATGAA 2 cut(s) 216, 383
Van91I CCANNNNNTGG 2 cut(s) 91, 157
VpaK11BI GGWCC 1 cut(s) 148
XmnI GAANNNNTTC 2 cut(s) 246, 412
XspI CTAG 2 cut(s) 282, 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.