Rroxscaffold_1G00001760

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0008182
Physical Location & Seq
Reverse (-)
1980940 .. 1984987
4048 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00001760.1

Sequence Viewer

Length: 639 bp
ATGCCTACAAAGTTATCGGCTCCTCTTGCATTTACACCAATCCCGGAAGAGGAGCTTGTTGACTCCGAATCGGTGCGAGGCGTTGATGACGTTGGTCTGGATTTGGAGGTTGAGGGCGATGAAGTCAGCCGGGTGGTGTTGGTGGCGCGGATGCCGCCGACTTTAGCGAGCGGCGAGGATTACGAATTGGGGCTTTTCGGCGGCGAAGAAGGACTCGACGTCGTTTTAGCGCGTGAGGTTGAGGTTGGTGTGGGTGCGGAGGACGAGAGTCCACCTGCTACAAATTGGGTGGTATTATGGGATTATGTATATGACTGTATATTGCATCCTTGTGCCATAGTGCTCACCCGTCAATTATTAACACAAGTCATAAGGTCTTTACAAGAACTTGATGCTCCCTTCCTTGTTTTCCTCCTCGGTGGTTCTCAAGCTGCTTCTCTGAATTTGGTAGCTGATTGTGGTTCTTTGTTTCAATTGTTATTCCTTGAGCAGTTGCATAGTGTTCTTCAAGAAAATGAAGAATCCATTAGAGTCATGATGAGCTCATACTTAAGAGCCGTGATCAGTCAGTATCCGACTATGTCTGCAAATCTAGAGGAGTTCAAAGAAGAATTTAAGGGTATTAACCAAGAAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

212

Amino Acids

23.36

Weight (kDa)

4.07

Isoelectric Point (pI)

50.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 283
AatII GACGTC 1 cut(s) 222
Acc36I ACCTGC 1 cut(s) 283
AccBSI CCGCTC 1 cut(s) 171
AccII CGCG 2 cut(s) 148, 232
AciI CCGC 5 cut(s) 148, 155, 171, 201, 257
AcsI RAATTY 2 cut(s) 442, 611
AcyI GRCGYC 1 cut(s) 219
AfiI CCNNNNNNNGG 1 cut(s) 49
AflII CTTAAG 1 cut(s) 550
AgsI TTSAA 3 cut(s) 473, 509, 604
AhdI GACNNNNNGTC 1 cut(s) 218
AluBI AGCT 4 cut(s) 55, 431, 452, 543
AluI AGCT 4 cut(s) 55, 431, 452, 543
Alw21I GWGCWC 2 cut(s) 345, 545
ApeKI GCWGC 1 cut(s) 431
ApoI RAATTY 2 cut(s) 442, 611
AspLEI GCGC 2 cut(s) 148, 232
AsuC2I CCSGG 2 cut(s) 44, 131
AsuHPI GGTGA 1 cut(s) 337
BanII GRGCYC 1 cut(s) 545
Bbv12I GWGCWC 2 cut(s) 345, 545
BbvI GCAGC 1 cut(s) 418
BceAI ACGGC 1 cut(s) 542
BciVI GTATCC 1 cut(s) 582
BclI TGATCA 1 cut(s) 561
BcnI CCSGG 2 cut(s) 44, 131
BfaI CTAG 1 cut(s) 593
BfrI CTTAAG 1 cut(s) 550
BfuAI ACCTGC 1 cut(s) 283
BfuI GTATCC 1 cut(s) 582
BisI GCNGC 4 cut(s) 155, 172, 202, 432
BlsI GCNGC 4 cut(s) 156, 173, 203, 433
Bme1390I CCNGG 2 cut(s) 44, 131
BmeRI GACNNNNNGTC 1 cut(s) 218
BmiI GGNNCC 1 cut(s) 21
BmrFI CCNGG 2 cut(s) 44, 131
BmsI GCATC 3 cut(s) 141, 334, 382
BoxI GACNNNNGTC 2 cut(s) 93, 267
BpuEI CTTGAG 2 cut(s) 411, 506
BpuMI CCSGG 2 cut(s) 44, 131
BsaHI GRCGYC 1 cut(s) 219
BsaJI CCNNGG 1 cut(s) 415
Bsc4I CCNNNNNNNGG 1 cut(s) 49
BseDI CCNNGG 1 cut(s) 415
BseGI GGATG 2 cut(s) 156, 325
BseLI CCNNNNNNNGG 1 cut(s) 49
BseRI GAGGAG 4 cut(s) 12, 65, 404, 611
BseXI GCAGC 1 cut(s) 418
Bsh1236I CGCG 2 cut(s) 148, 232
BsiHKAI GWGCWC 2 cut(s) 345, 545
BsiSI CCGG 2 cut(s) 44, 130
BslI CCNNNNNNNGG 1 cut(s) 49
Bsp1286I GDGCHC 2 cut(s) 345, 545
Bsp143I GATC 1 cut(s) 561
BspACI CCGC 5 cut(s) 148, 155, 171, 201, 257
BspFNI CGCG 2 cut(s) 148, 232
BspHI TCATGA 1 cut(s) 534
BspLI GGNNCC 1 cut(s) 21
BspMI ACCTGC 1 cut(s) 283
BspTI CTTAAG 1 cut(s) 550
BsrBI CCGCTC 1 cut(s) 171
BssECI CCNNGG 1 cut(s) 415
BssMI GATC 1 cut(s) 561
BssNI GRCGYC 1 cut(s) 219
Bst4CI ACNGT 1 cut(s) 317
Bst6I CTCTTC 2 cut(s) 42, 627
BstACI GRCGYC 1 cut(s) 219
BstAFI CTTAAG 1 cut(s) 550
BstC8I GCNNGC 1 cut(s) 169
BstF5I GGATG 2 cut(s) 156, 325
BstFNI CGCG 2 cut(s) 148, 232
BstHHI GCGC 2 cut(s) 148, 232
BstKTI GATC 1 cut(s) 564
BstMBI GATC 1 cut(s) 561
BstMWI GCNNNNNNNGC 2 cut(s) 26, 154
BstPAI GACNNNNGTC 2 cut(s) 93, 267
BstSCI CCNGG 2 cut(s) 42, 129
BstUI CGCG 2 cut(s) 148, 232
BstV1I GCAGC 1 cut(s) 418
BsuI GTATCC 1 cut(s) 582
BtgZI GCGATG 1 cut(s) 132
BtsCI GGATG 2 cut(s) 156, 325
BveI ACCTGC 1 cut(s) 283
Cac8I GCNNGC 1 cut(s) 169
CciI TCATGA 1 cut(s) 534
CfoI GCGC 2 cut(s) 148, 232
CspCI CAANNNNNGTGG 2 cut(s) 270, 305
CviAII CATG 1 cut(s) 535
CviJI RGCY 8 cut(s) 20, 55, 129, 193, 431, 452, 543, 557
CviKI_1 RGCY 8 cut(s) 20, 55, 129, 193, 431, 452, 543, 557
DpnI GATC 1 cut(s) 563
DpnII GATC 1 cut(s) 561
DriI GACNNNNNGTC 1 cut(s) 218
Eam1104I CTCTTC 2 cut(s) 42, 627
Eam1105I GACNNNNNGTC 1 cut(s) 218
EarI CTCTTC 2 cut(s) 42, 627
Ecl136II GAGCTC 1 cut(s) 543
Eco24I GRGCYC 1 cut(s) 545
Eco53kI GAGCTC 1 cut(s) 543
EcoICRI GAGCTC 1 cut(s) 543
EcoT38I GRGCYC 1 cut(s) 545
FaeI CATG 1 cut(s) 538
FalI AAGNNNNNCTT 2 cut(s) 39, 71
FatI CATG 1 cut(s) 534
FbaI TGATCA 1 cut(s) 561
Fnu4HI GCNGC 4 cut(s) 155, 172, 202, 432
FokI GGATG 2 cut(s) 163, 312
FriOI GRGCYC 1 cut(s) 545
Fsp4HI GCNGC 4 cut(s) 155, 172, 202, 432
FspBI CTAG 1 cut(s) 593
GlaI GCGC 2 cut(s) 147, 231
GluI GCNGC 4 cut(s) 155, 172, 202, 432
HapII CCGG 2 cut(s) 44, 130
HhaI GCGC 2 cut(s) 148, 232
Hin1I GRCGYC 1 cut(s) 219
Hin1II CATG 1 cut(s) 538
Hin6I GCGC 2 cut(s) 146, 230
HinP1I GCGC 2 cut(s) 146, 230
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HinfI GANTC 6 cut(s) 62, 68, 213, 268, 521, 531
HpaII CCGG 2 cut(s) 44, 130
HphI GGTGA 1 cut(s) 337
Hpy166II GTNNAC 2 cut(s) 61, 272
Hpy188I TCNGA 3 cut(s) 67, 441, 576
Hpy188III TCNNGA 4 cut(s) 98, 509, 535, 593
Hpy8I GTNNAC 2 cut(s) 61, 272
Hpy99I CGWCG 2 cut(s) 221, 224
HpyAV CCTTC 2 cut(s) 203, 409
HpyCH4III ACNGT 1 cut(s) 317
HpyCH4IV ACGT 2 cut(s) 90, 219
HpyCH4V TGCA 4 cut(s) 29, 325, 496, 587
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 154
HpySE526I ACGT 2 cut(s) 90, 219
Hsp92I GRCGYC 1 cut(s) 219
Hsp92II CATG 1 cut(s) 538
HspAI GCGC 2 cut(s) 146, 230
Ksp22I TGATCA 1 cut(s) 561
Kzo9I GATC 1 cut(s) 561
LmnI GCTCC 3 cut(s) 25, 52, 400
LpnPI CCDG 4 cut(s) 57, 83, 143, 288
Lsp1109I GCAGC 1 cut(s) 418
LweI GCATC 3 cut(s) 141, 334, 382
MaeI CTAG 1 cut(s) 593
MaeII ACGT 2 cut(s) 90, 219
MalI GATC 1 cut(s) 563
MbiI CCGCTC 1 cut(s) 171
MboI GATC 1 cut(s) 561
MboII GAAGA 5 cut(s) 59, 218, 497, 530, 620
MfeI CAATTG 1 cut(s) 473
MhlI GDGCHC 2 cut(s) 345, 545
MluCI AATT 6 cut(s) 185, 283, 353, 442, 473, 611
MlyI GAGTC 4 cut(s) 56, 207, 277, 540
MmeI TCCRAC 1 cut(s) 599
MseI TTAA 4 cut(s) 359, 551, 615, 624
MslI CAYNNNNRTG 1 cut(s) 330
MspCI CTTAAG 1 cut(s) 550
MspI CCGG 2 cut(s) 44, 130
MspR9I CCNGG 2 cut(s) 44, 131
MunI CAATTG 1 cut(s) 473
MvnI CGCG 2 cut(s) 148, 232
MwoI GCNNNNNNNGC 2 cut(s) 26, 154
NciI CCSGG 2 cut(s) 44, 131
NdeII GATC 1 cut(s) 561
NlaIII CATG 1 cut(s) 538
NlaIV GGNNCC 1 cut(s) 21
PagI TCATGA 1 cut(s) 534
PaqCI CACCTGC 1 cut(s) 283
PfeI GAWTC 2 cut(s) 68, 521
PflFI GACNNNGTC 1 cut(s) 580
PfoI TCCNGGA 1 cut(s) 42
PkrI GCNGC 4 cut(s) 156, 173, 203, 433
PleI GAGTC 4 cut(s) 56, 207, 276, 539
PpsI GAGTC 4 cut(s) 56, 207, 276, 539
PshAI GACNNNNGTC 2 cut(s) 93, 267
Psp124BI GAGCTC 1 cut(s) 545
PspN4I GGNNCC 1 cut(s) 21
PsyI GACNNNGTC 1 cut(s) 580
RseI CAYNNNNRTG 1 cut(s) 330
SacI GAGCTC 1 cut(s) 545
SaqAI TTAA 4 cut(s) 359, 551, 615, 624
SatI GCNGC 4 cut(s) 155, 172, 202, 432
Sau3AI GATC 1 cut(s) 561
SchI GAGTC 4 cut(s) 56, 207, 277, 540
ScrFI CCNGG 2 cut(s) 44, 131
SduI GDGCHC 2 cut(s) 345, 545
SfaNI GCATC 3 cut(s) 141, 334, 382
SmiMI CAYNNNNRTG 1 cut(s) 330
SmlI CTYRAG 3 cut(s) 426, 485, 550
SmoI CTYRAG 3 cut(s) 426, 485, 550
Sse9I AATT 6 cut(s) 185, 283, 353, 442, 473, 611
SsiI CCGC 5 cut(s) 148, 155, 171, 201, 257
SspMI CTAG 1 cut(s) 593
SstI GAGCTC 1 cut(s) 545
StyD4I CCNGG 2 cut(s) 42, 129
TaaI ACNGT 1 cut(s) 317
TaiI ACGT 2 cut(s) 93, 222
TaqI TCGA 1 cut(s) 216
TasI AATT 6 cut(s) 185, 283, 353, 442, 473, 611
TauI GCSGC 3 cut(s) 157, 174, 204
TfiI GAWTC 2 cut(s) 68, 521
Tru1I TTAA 4 cut(s) 359, 551, 615, 624
Tru9I TTAA 4 cut(s) 359, 551, 615, 624
TseI GCWGC 1 cut(s) 431
TspDTI ATGAA 2 cut(s) 135, 531
Tth111I GACNNNGTC 1 cut(s) 580
Vha464I CTTAAG 1 cut(s) 550
XapI RAATTY 2 cut(s) 442, 611
XbaI TCTAGA 1 cut(s) 592
XspI CTAG 1 cut(s) 593
ZraI GACGTC 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.