RchiOBHm_Chr7g0197761

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0007555
Physical Location & Seq
Forward (+)
15599244 .. 15600722
1479 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17691

Sequence Viewer

Length: 276 bp
ATGCGCAGTCGTGGCTTTGATAGTGTTGCTGGGTCGTCAGAAGTGGTTGTTAGCGTCGATCTCGTCAGCGATGGCTATTGCAGTTTGGCATCCTCCATTGCAGCCTTGCAGGTCCTCAGGACGCATCCGTCAGTGCTGTTGTCCAGCTTGTTGGTATCAGTATCCGGATCTGGGATCAGGGTGGGCTTGGCAGATGGAGCCGGATCTGGGATCCGGGTGAAGTTTGGTTTTGGCCTGCGGCCCACAATCTTTGTTGGGCTTTTTATGATTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

9.31

Weight (kDa)

8.88

Isoelectric Point (pI)

29.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 127
Acc16I TGCGCA 1 cut(s) 5
Acc36I ACCTGC 1 cut(s) 100
AccIII TCCGGA 1 cut(s) 164
AciI CCGC 1 cut(s) 238
AclWI GGATC 5 cut(s) 175, 182, 205, 211, 218
AfiI CCNNNNNNNGG 2 cut(s) 171, 207
AluBI AGCT 1 cut(s) 147
AluI AGCT 1 cut(s) 147
AlwI GGATC 5 cut(s) 175, 182, 205, 211, 218
Aor13HI TCCGGA 1 cut(s) 164
AoxI GGCC 2 cut(s) 232, 239
ApeKI GCWGC 1 cut(s) 101
AspLEI GCGC 1 cut(s) 6
AspS9I GGNCC 2 cut(s) 112, 240
AsuC2I CCSGG 1 cut(s) 215
AsuHPI GGTGA 1 cut(s) 229
AvaII GGWCC 1 cut(s) 112
AxyI CCTNAGG 1 cut(s) 116
BamHI GGATCC 1 cut(s) 210
BbvI GCAGC 1 cut(s) 113
BccI CCATC 2 cut(s) 65, 188
BciVI GTATCC 1 cut(s) 172
BcnI CCSGG 1 cut(s) 215
BfaI CTAG 1 cut(s) 274
BfuAI ACCTGC 1 cut(s) 100
BfuI GTATCC 1 cut(s) 172
BisI GCNGC 2 cut(s) 102, 239
BlsI GCNGC 2 cut(s) 103, 240
Bme1390I CCNGG 1 cut(s) 215
Bme18I GGWCC 1 cut(s) 112
BmgT120I GGNCC 2 cut(s) 112, 240
BmiI GGNNCC 2 cut(s) 199, 212
BmrFI CCNGG 1 cut(s) 215
BmsI GCATC 2 cut(s) 98, 133
BpuMI CCSGG 1 cut(s) 215
BsaWI WCCGGW 1 cut(s) 164
Bsc4I CCNNNNNNNGG 2 cut(s) 171, 207
Bse21I CCTNAGG 1 cut(s) 116
Bse3DI GCAATG 1 cut(s) 96
BseAI TCCGGA 1 cut(s) 164
BseGI GGATG 2 cut(s) 89, 124
BseLI CCNNNNNNNGG 2 cut(s) 171, 207
BseMI GCAATG 1 cut(s) 96
BseMII CTCAG 1 cut(s) 130
BseXI GCAGC 1 cut(s) 113
BseYI CCCAGC 1 cut(s) 29
BshFI GGCC 2 cut(s) 234, 241
BsiSI CCGG 3 cut(s) 165, 201, 214
BslI CCNNNNNNNGG 2 cut(s) 171, 207
BsnI GGCC 2 cut(s) 234, 241
Bsp13I TCCGGA 1 cut(s) 164
Bsp143I GATC 5 cut(s) 58, 167, 174, 203, 210
BspACI CCGC 1 cut(s) 238
BspANI GGCC 2 cut(s) 234, 241
BspCNI CTCAG 1 cut(s) 129
BspEI TCCGGA 1 cut(s) 164
BspLI GGNNCC 2 cut(s) 199, 212
BspMI ACCTGC 1 cut(s) 100
BspPI GGATC 5 cut(s) 175, 182, 205, 211, 218
BsrDI GCAATG 1 cut(s) 96
BssMI GATC 5 cut(s) 58, 167, 174, 203, 210
BstC8I GCNNGC 1 cut(s) 236
BstDEI CTNAG 1 cut(s) 116
BstF5I GGATG 2 cut(s) 89, 124
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 5 cut(s) 61, 170, 177, 206, 213
BstMBI GATC 5 cut(s) 58, 167, 174, 203, 210
BstMWI GCNNNNNNNGC 2 cut(s) 12, 197
BstSCI CCNGG 1 cut(s) 213
BstV1I GCAGC 1 cut(s) 113
BstX2I RGATCY 3 cut(s) 167, 203, 210
BstXI CCANNNNNNTGG 1 cut(s) 151
BstYI RGATCY 3 cut(s) 167, 203, 210
Bsu36I CCTNAGG 1 cut(s) 116
BsuI GTATCC 1 cut(s) 172
BsuRI GGCC 2 cut(s) 234, 241
BtgZI GCGATG 1 cut(s) 84
BtsCI GGATG 2 cut(s) 89, 124
BtsIMutI CAGTG 1 cut(s) 138
BveI ACCTGC 1 cut(s) 100
Cac8I GCNNGC 1 cut(s) 236
CfoI GCGC 1 cut(s) 6
Cfr13I GGNCC 2 cut(s) 112, 240
CseI GACGC 2 cut(s) 43, 130
CspCI CAANNNNNGTGG 2 cut(s) 232, 267
CviJI RGCY 9 cut(s) 15, 75, 104, 147, 186, 200, 234, 241, 259
CviKI_1 RGCY 9 cut(s) 15, 75, 104, 147, 186, 200, 234, 241, 259
DdeI CTNAG 1 cut(s) 116
DpnI GATC 5 cut(s) 60, 169, 176, 205, 212
DpnII GATC 5 cut(s) 58, 167, 174, 203, 210
DrdI GACNNNNNNGTC 1 cut(s) 127
DseDI GACNNNNNNGTC 1 cut(s) 127
Eco47I GGWCC 1 cut(s) 112
Eco81I CCTNAGG 1 cut(s) 116
EcoO109I RGGNCCY 1 cut(s) 112
FaiI YATR 1 cut(s) 266
Fnu4HI GCNGC 2 cut(s) 102, 239
FokI GGATG 2 cut(s) 76, 111
Fsp4HI GCNGC 2 cut(s) 102, 239
FspBI CTAG 1 cut(s) 274
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 1 cut(s) 5
GluI GCNGC 2 cut(s) 102, 239
GsaI CCCAGC 1 cut(s) 33
HaeIII GGCC 2 cut(s) 234, 241
HapII CCGG 3 cut(s) 165, 201, 214
HgaI GACGC 2 cut(s) 43, 130
HhaI GCGC 1 cut(s) 6
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HpaII CCGG 3 cut(s) 165, 201, 214
HphI GGTGA 1 cut(s) 229
Hpy188I TCNGA 1 cut(s) 40
Hpy188III TCNNGA 2 cut(s) 118, 165
Hpy99I CGWCG 1 cut(s) 59
HpyCH4V TGCA 3 cut(s) 81, 101, 109
HpyF10VI GCNNNNNNNGC 2 cut(s) 12, 197
HpyF3I CTNAG 1 cut(s) 116
HspAI GCGC 1 cut(s) 4
Kpn2I TCCGGA 1 cut(s) 164
Kzo9I GATC 5 cut(s) 58, 167, 174, 203, 210
LmnI GCTCC 1 cut(s) 197
Lsp1109I GCAGC 1 cut(s) 113
LweI GCATC 2 cut(s) 98, 133
MaeI CTAG 1 cut(s) 274
MalI GATC 5 cut(s) 60, 169, 176, 205, 212
MboI GATC 5 cut(s) 58, 167, 174, 203, 210
MflI RGATCY 3 cut(s) 167, 203, 210
MnlI CCTC 2 cut(s) 103, 125
MroI TCCGGA 1 cut(s) 164
MspI CCGG 3 cut(s) 165, 201, 214
MspR9I CCNGG 1 cut(s) 215
MwoI GCNNNNNNNGC 2 cut(s) 12, 197
NciI CCSGG 1 cut(s) 215
NdeII GATC 5 cut(s) 58, 167, 174, 203, 210
NlaIV GGNNCC 2 cut(s) 199, 212
NsbI TGCGCA 1 cut(s) 5
PkrI GCNGC 2 cut(s) 103, 240
PpuMI RGGWCCY 1 cut(s) 112
Psp5II RGGWCCY 1 cut(s) 112
PspFI CCCAGC 1 cut(s) 29
PspN4I GGNNCC 2 cut(s) 199, 212
PspPI GGNCC 2 cut(s) 112, 240
PspPPI RGGWCCY 1 cut(s) 112
PsuI RGATCY 3 cut(s) 167, 203, 210
SatI GCNGC 2 cut(s) 102, 239
Sau3AI GATC 5 cut(s) 58, 167, 174, 203, 210
Sau96I GGNCC 2 cut(s) 112, 240
ScrFI CCNGG 1 cut(s) 215
SetI ASST 2 cut(s) 114, 149
SfaNI GCATC 2 cut(s) 98, 133
SinI GGWCC 1 cut(s) 112
SsiI CCGC 1 cut(s) 238
SspMI CTAG 1 cut(s) 274
StyD4I CCNGG 1 cut(s) 213
TaqI TCGA 1 cut(s) 57
TauI GCSGC 1 cut(s) 241
TscAI CASTG 1 cut(s) 138
TseI GCWGC 1 cut(s) 101
TspGWI ACGGA 1 cut(s) 117
TspRI CASTG 1 cut(s) 138
VpaK11BI GGWCC 1 cut(s) 112
XspI CTAG 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.