Rh3BG189000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0007555
Physical Location & Seq
Reverse (-)
16672418 .. 16672696
279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG189000.1

Sequence Viewer

Length: 279 bp
ATGGACGAAATTGTAGGCCTAGTCCTGATGTCTTTCTTTTGCGTCTCTTTTGTTGGTTGTGGCTCGGAGCTCCCAGAGAAGAAGTTTGATGGGGAAACGGTTCTTTTGGATTGGATGGGATCGTTGGATTGCGGTGGTGGTTCGCGATGCAGTGATGGAGGGGCCTCGCTTCTGAGAGGCTGGAGAGTTGGAATAGGGGTTCTGCGTTTTGCTAGTTTATCGCCGGCATGGGCTATGCGCAGTCGTGGCTTTGATGCACTACTACAAATCCCTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

9.82

Weight (kDa)

4.85

Isoelectric Point (pI)

47.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 239
AccII CGCG 1 cut(s) 145
AciI CCGC 1 cut(s) 132
AclWI GGATC 1 cut(s) 127
AloI GAACNNNNNNTCC 2 cut(s) 183, 215
AluBI AGCT 1 cut(s) 70
AluI AGCT 1 cut(s) 70
Alw21I GWGCWC 1 cut(s) 72
Alw26I GTCTC 1 cut(s) 49
AlwI GGATC 1 cut(s) 127
AoxI GGCC 2 cut(s) 16, 162
Asp700I GAANNNNTTC 1 cut(s) 99
AspLEI GCGC 1 cut(s) 240
AspS9I GGNCC 1 cut(s) 162
BanII GRGCYC 1 cut(s) 72
Bbv12I GWGCWC 1 cut(s) 72
BccI CCATC 3 cut(s) 83, 109, 149
BcoDI GTCTC 1 cut(s) 49
BfaI CTAG 2 cut(s) 20, 213
BmgT120I GGNCC 1 cut(s) 162
BmiI GGNNCC 1 cut(s) 163
BmsI GCATC 2 cut(s) 137, 244
BpmI CTGGAG 1 cut(s) 202
Bse118I RCCGGY 1 cut(s) 223
BseGI GGATG 1 cut(s) 120
BseMII CTCAG 1 cut(s) 164
Bsh1236I CGCG 1 cut(s) 145
BshFI GGCC 2 cut(s) 18, 164
BsiHKAI GWGCWC 1 cut(s) 72
BsiSI CCGG 1 cut(s) 224
BsmAI GTCTC 1 cut(s) 49
BsmBI CGTCTC 1 cut(s) 49
BsnI GGCC 2 cut(s) 18, 164
Bsp1286I GDGCHC 1 cut(s) 72
Bsp143I GATC 1 cut(s) 119
Bsp68I TCGCGA 1 cut(s) 145
BspACI CCGC 1 cut(s) 132
BspANI GGCC 2 cut(s) 18, 164
BspCNI CTCAG 1 cut(s) 165
BspFNI CGCG 1 cut(s) 145
BspLI GGNNCC 1 cut(s) 163
BspPI GGATC 1 cut(s) 127
BsrFI RCCGGY 1 cut(s) 223
BssAI RCCGGY 1 cut(s) 223
BssMI GATC 1 cut(s) 119
Bst4CI ACNGT 1 cut(s) 100
BstC8I GCNNGC 1 cut(s) 225
BstDEI CTNAG 1 cut(s) 173
BstF5I GGATG 1 cut(s) 120
BstFNI CGCG 1 cut(s) 145
BstHHI GCGC 1 cut(s) 240
BstKTI GATC 1 cut(s) 122
BstMAI GTCTC 1 cut(s) 49
BstMBI GATC 1 cut(s) 119
BstMWI GCNNNNNNNGC 1 cut(s) 246
BstUI CGCG 1 cut(s) 145
BsuRI GGCC 2 cut(s) 18, 164
BtgZI GCGATG 1 cut(s) 160
BtsCI GGATG 1 cut(s) 120
BtsI GCAGTG 1 cut(s) 157
BtsIMutI CAGTG 1 cut(s) 157
BtuMI TCGCGA 1 cut(s) 145
Cac8I GCNNGC 1 cut(s) 225
CfoI GCGC 1 cut(s) 240
Cfr10I RCCGGY 1 cut(s) 223
Cfr13I GGNCC 1 cut(s) 162
CseI GACGC 1 cut(s) 31
CviAII CATG 1 cut(s) 228
CviJI RGCY 7 cut(s) 18, 63, 70, 164, 180, 233, 249
CviKI_1 RGCY 7 cut(s) 18, 63, 70, 164, 180, 233, 249
DdeI CTNAG 1 cut(s) 173
DpnI GATC 1 cut(s) 121
DpnII GATC 1 cut(s) 119
Ecl136II GAGCTC 1 cut(s) 70
Eco147I AGGCCT 1 cut(s) 18
Eco24I GRGCYC 1 cut(s) 72
Eco53kI GAGCTC 1 cut(s) 70
EcoICRI GAGCTC 1 cut(s) 70
EcoO109I RGGNCCY 1 cut(s) 162
EcoT38I GRGCYC 1 cut(s) 72
Esp3I CGTCTC 1 cut(s) 49
FaeI CATG 1 cut(s) 231
FaiI YATR 3 cut(s) 229, 236, 277
FatI CATG 1 cut(s) 227
FokI GGATG 1 cut(s) 127
FriOI GRGCYC 1 cut(s) 72
FspBI CTAG 2 cut(s) 20, 213
FspI TGCGCA 1 cut(s) 239
GlaI GCGC 1 cut(s) 239
GsuI CTGGAG 1 cut(s) 202
HaeIII GGCC 2 cut(s) 18, 164
HapII CCGG 1 cut(s) 224
HgaI GACGC 1 cut(s) 31
HhaI GCGC 1 cut(s) 240
Hin1II CATG 1 cut(s) 231
Hin6I GCGC 1 cut(s) 238
HinP1I GCGC 1 cut(s) 238
HpaII CCGG 1 cut(s) 224
Hpy188I TCNGA 2 cut(s) 67, 174
Hpy188III TCNNGA 2 cut(s) 25, 144
HpyCH4III ACNGT 1 cut(s) 100
HpyCH4V TGCA 2 cut(s) 150, 257
HpyF10VI GCNNNNNNNGC 1 cut(s) 246
HpyF3I CTNAG 1 cut(s) 173
Hsp92II CATG 1 cut(s) 231
HspAI GCGC 1 cut(s) 238
KroI GCCGGC 1 cut(s) 223
KroNI GCCGGC 1 cut(s) 225
Kzo9I GATC 1 cut(s) 119
LmnI GCTCC 2 cut(s) 67, 75
LpnPI CCDG 4 cut(s) 38, 87, 166, 237
LweI GCATC 2 cut(s) 137, 244
MaeI CTAG 2 cut(s) 20, 213
MalI GATC 1 cut(s) 121
MboI GATC 1 cut(s) 119
MboII GAAGA 1 cut(s) 91
MhlI GDGCHC 1 cut(s) 72
MluCI AATT 1 cut(s) 9
MmeI TCCRAC 2 cut(s) 105, 169
MnlI CCTC 3 cut(s) 152, 170, 175
MroNI GCCGGC 1 cut(s) 223
MroXI GAANNNNTTC 1 cut(s) 99
MspI CCGG 1 cut(s) 224
MvnI CGCG 1 cut(s) 145
MwoI GCNNNNNNNGC 1 cut(s) 246
NaeI GCCGGC 1 cut(s) 225
NdeII GATC 1 cut(s) 119
NgoMIV GCCGGC 1 cut(s) 223
NlaIII CATG 1 cut(s) 231
NlaIV GGNNCC 1 cut(s) 163
NruI TCGCGA 1 cut(s) 145
NsbI TGCGCA 1 cut(s) 239
PceI AGGCCT 1 cut(s) 18
PdiI GCCGGC 1 cut(s) 225
PdmI GAANNNNTTC 1 cut(s) 99
Psp124BI GAGCTC 1 cut(s) 72
PspN4I GGNNCC 1 cut(s) 163
PspPI GGNCC 1 cut(s) 162
RruI TCGCGA 1 cut(s) 145
SacI GAGCTC 1 cut(s) 72
Sau3AI GATC 1 cut(s) 119
Sau96I GGNCC 1 cut(s) 162
SduI GDGCHC 1 cut(s) 72
SetI ASST 1 cut(s) 72
SfaNI GCATC 2 cut(s) 137, 244
Sse9I AATT 1 cut(s) 9
SseBI AGGCCT 1 cut(s) 18
SsiI CCGC 1 cut(s) 132
SspMI CTAG 2 cut(s) 20, 213
SstI GAGCTC 1 cut(s) 72
StuI AGGCCT 1 cut(s) 18
TaaI ACNGT 1 cut(s) 100
TasI AATT 1 cut(s) 9
TscAI CASTG 1 cut(s) 157
TspDTI ATGAA 1 cut(s) 264
TspRI CASTG 1 cut(s) 157
XmnI GAANNNNTTC 1 cut(s) 99
XspI CTAG 2 cut(s) 20, 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.