Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0007555

Physical Location & Seq

Genomic Coordinates Forward (+)

60968240 .. 60974797

Gene Structure 6558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00125920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGACAAAATTGCAGGCCTAGTCCCGATGTCTTTCTTTTGCGTCTCTTTTGCCGGTTGTGTCTCGCAGCTCCCGCAGAAGAAGTTTGATGGGGAAACGGTTCTTTTGGATTGGATGAAATCGTTGGATCGCCGTGGTGGTTCACGATGCGGTGATGGAGGGGCCTCGCTTCGAGAGGCCGGAGAGTTGGAATCGGGGCTCTACGTTTTGCCGATACAACAAATGGGTGCTTTCCTTCTTCAAAGGTTGCGTCACGGTGAAAGTCATGATGGACCACCGGATCGTTATCTAGTTGGTCCATATGCAACACCAATCAAGAAAGAAAATGAAGGTCCCGCTAAGAAAGCTTCCAAGCTACCTACTCCTGCAGTACTCAGGTCGGAAGGCTTGTGTCCTTTATCGCCTGAAGAAGCTGTGCTTATGCTTGCTGCTCTTGGTTTCAAGCGTAAGACATATATTTGCGGCAGGTTCACAGATATATGGAGGGAGATGAAGGACGATTGCTTTGACGAGTTAGCAGCACTGGATTTCATAGGCTGCACTGCTGCCGATGCATTTGCCATGACTGATTCTGATTTCTGGAAGTCAATTATCATCCTTGGTAACTGGTTTTCACATATACTATGGTGGAGGGATAACGCCAACAATACGACCAAACAAACGGAGGCTTGCCAGCATTTTTTCAAAGAACGCCAGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

233

Amino Acids

26.1

Weight (kDa)

6.11

Isoelectric Point (pI)

42.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007555)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0013651 RchiOBHm_Chr7g0197761
rosa_laevigata	RLG00000032036
rosa_roxburghii	Rroxscaffold_1G00062960 Rroxscaffold_2G00125920
rosa_rugosa	Rorug02G0448100 Rorug04G0327200 Rorug05G0011500
rosa_samantha	Rh1CG069900 Rh1DG074500 Rh2DG534400 Rh3AG163500 Rh3AG171800 Rh3BG189000 Rh3BG197200 Rh3BG240300 Rh3CG179000 Rh3CG188200 Rh4DG175900 Rh5CG114300 Rh5DG101000 Rh6DG325400 Rh7AG273400 Rh7CG176000 Rh7CG292500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	456
AciI	CCGC	4 cut(s)	74, 150, 336, 462
AclWI	GGATC	2 cut(s)	135, 288
AcuI	CTGAAG	1 cut(s)	426
AfaI	GTAC	1 cut(s)	372
AgsI	TTSAA	3 cut(s)	242, 442, 685
AluBI	AGCT	4 cut(s)	70, 347, 355, 413
AluI	AGCT	4 cut(s)	70, 347, 355, 413
Alw26I	GTCTC	2 cut(s)	49, 67
AlwI	GGATC	2 cut(s)	135, 288
AoxI	GGCC	3 cut(s)	16, 162, 177
ApeKI	GCWGC	5 cut(s)	67, 428, 518, 537, 545
ArsI	GACNNNNNNTTYG	4 cut(s)	235, 267, 488, 520
Asp700I	GAANNNNTTC	1 cut(s)	99
AspS9I	GGNCC	4 cut(s)	162, 272, 296, 332
AsuHPI	GGTGA	2 cut(s)	164, 269
AvaII	GGWCC	3 cut(s)	272, 296, 332
BanII	GRGCYC	1 cut(s)	201
BbvI	GCAGC	5 cut(s)	79, 415, 524, 530, 532
BccI	CCATC	3 cut(s)	83, 149, 263
BceAI	ACGGC	1 cut(s)	117
BcgI	CGANNNNNNTGC	2 cut(s)	539, 573
BcoDI	GTCTC	2 cut(s)	49, 67
BfaI	CTAG	2 cut(s)	20, 290
BfmI	CTRYAG	1 cut(s)	366
BfuAI	ACCTGC	1 cut(s)	456
BisI	GCNGC	6 cut(s)	68, 429, 463, 519, 538, 546
BlsI	GCNGC	6 cut(s)	69, 430, 464, 520, 539, 547
BmcAI	AGTACT	1 cut(s)	372
Bme18I	GGWCC	3 cut(s)	272, 296, 332
BmgT120I	GGNCC	4 cut(s)	162, 272, 296, 332
BmiI	GGNNCC	2 cut(s)	163, 334
BmsI	GCATC	2 cut(s)	137, 541
BsaBI	GATNNNNATC	1 cut(s)	285
BsaJI	CCNNGG	2 cut(s)	133, 598
BsaWI	WCCGGW	1 cut(s)	277
Bse118I	RCCGGY	1 cut(s)	53
Bse1I	ACTGG	3 cut(s)	528, 611, 694
Bse8I	GATNNNNATC	1 cut(s)	285
BseDI	CCNNGG	2 cut(s)	133, 598
BseGI	GGATG	2 cut(s)	120, 594
BseJI	GATNNNNATC	1 cut(s)	285
BseMII	CTCAG	1 cut(s)	388
BseNI	ACTGG	3 cut(s)	528, 611, 694
BseXI	GCAGC	5 cut(s)	79, 415, 524, 530, 532
BsgI	GTGCAG	1 cut(s)	523
BshFI	GGCC	3 cut(s)	18, 164, 179
BsiSI	CCGG	3 cut(s)	54, 180, 278
BslFI	GGGAC	2 cut(s)	8, 318
BsmAI	GTCTC	2 cut(s)	49, 67
BsmBI	CGTCTC	1 cut(s)	49
BsmFI	GGGAC	2 cut(s)	8, 318
BsnI	GGCC	3 cut(s)	18, 164, 179
Bsp1286I	GDGCHC	1 cut(s)	201
Bsp143I	GATC	2 cut(s)	127, 280
BspACI	CCGC	4 cut(s)	74, 150, 336, 462
BspANI	GGCC	3 cut(s)	18, 164, 179
BspCNI	CTCAG	1 cut(s)	387
BspHI	TCATGA	1 cut(s)	265
BspLI	GGNNCC	2 cut(s)	163, 334
BspMAI	CTGCAG	1 cut(s)	370
BspMI	ACCTGC	1 cut(s)	456
BspPI	GGATC	2 cut(s)	135, 288
BsrFI	RCCGGY	1 cut(s)	53
BsrI	ACTGG	3 cut(s)	528, 611, 694
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	2 cut(s)	133, 598
BssMI	GATC	2 cut(s)	127, 280
BssT1I	CCWWGG	1 cut(s)	598
Bst4CI	ACNGT	2 cut(s)	100, 257
BstC8I	GCNNGC	4 cut(s)	16, 426, 670, 674
BstDEI	CTNAG	2 cut(s)	339, 374
BstDSI	CCRYGG	1 cut(s)	133
BstF5I	GGATG	2 cut(s)	120, 594
BstKTI	GATC	2 cut(s)	130, 283
BstMAI	GTCTC	2 cut(s)	49, 67
BstMBI	GATC	2 cut(s)	127, 280
BstMWI	GCNNNNNNNGC	3 cut(s)	73, 344, 551
BstSFI	CTRYAG	1 cut(s)	366
BstV1I	GCAGC	5 cut(s)	79, 415, 524, 530, 532
BsuRI	GGCC	3 cut(s)	18, 164, 179
BtgI	CCRYGG	1 cut(s)	133
BtsCI	GGATG	2 cut(s)	120, 594
BtsI	GCAGTG	1 cut(s)	540
BtsIMutI	CAGTG	2 cut(s)	521, 540
BveI	ACCTGC	1 cut(s)	456
Cac8I	GCNNGC	4 cut(s)	16, 426, 670, 674
CciI	TCATGA	1 cut(s)	265
Cfr10I	RCCGGY	1 cut(s)	53
Cfr13I	GGNCC	4 cut(s)	162, 272, 296, 332
CseI	GACGC	2 cut(s)	31, 239
Csp6I	GTAC	1 cut(s)	371
CviAII	CATG	2 cut(s)	266, 562
CviQI	GTAC	1 cut(s)	371
DdeI	CTNAG	2 cut(s)	339, 374
DpnI	GATC	2 cut(s)	129, 282
DpnII	GATC	2 cut(s)	127, 280
Eco130I	CCWWGG	1 cut(s)	598
Eco147I	AGGCCT	1 cut(s)	18
Eco24I	GRGCYC	1 cut(s)	201
Eco47I	GGWCC	3 cut(s)	272, 296, 332
Eco57I	CTGAAG	1 cut(s)	426
EcoO109I	RGGNCCY	2 cut(s)	162, 332
EcoT14I	CCWWGG	1 cut(s)	598
EcoT22I	ATGCAT	1 cut(s)	556
EcoT38I	GRGCYC	1 cut(s)	201
ErhI	CCWWGG	1 cut(s)	598
Esp3I	CGTCTC	1 cut(s)	49
FaeI	CATG	2 cut(s)	269, 565
FalI	AAGNNNNNCTT	2 cut(s)	402, 434
FaqI	GGGAC	2 cut(s)	8, 318
FatI	CATG	2 cut(s)	265, 561
FauI	CCCGC	2 cut(s)	81, 343
FauNDI	CATATG	1 cut(s)	301
Fnu4HI	GCNGC	6 cut(s)	68, 429, 463, 519, 538, 546
FokI	GGATG	2 cut(s)	127, 581
FriOI	GRGCYC	1 cut(s)	201
Fsp4HI	GCNGC	6 cut(s)	68, 429, 463, 519, 538, 546
FspBI	CTAG	2 cut(s)	20, 290
GluI	GCNGC	6 cut(s)	68, 429, 463, 519, 538, 546
HaeIII	GGCC	3 cut(s)	18, 164, 179
HapII	CCGG	3 cut(s)	54, 180, 278
HgaI	GACGC	2 cut(s)	31, 239
Hin1II	CATG	2 cut(s)	269, 565
HindIII	AAGCTT	1 cut(s)	345
HinfI	GANTC	2 cut(s)	191, 569
HpaII	CCGG	3 cut(s)	54, 180, 278
HphI	GGTGA	2 cut(s)	164, 269
Hpy166II	GTNNAC	2 cut(s)	143, 471
Hpy188I	TCNGA	2 cut(s)	382, 574
Hpy188III	TCNNGA	6 cut(s)	25, 144, 173, 266, 316, 580
Hpy8I	GTNNAC	2 cut(s)	143, 471
HpyAV	CCTTC	4 cut(s)	245, 323, 377, 487
HpyCH4III	ACNGT	2 cut(s)	100, 257
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	5 cut(s)	14, 305, 368, 540, 554
HpyF10VI	GCNNNNNNNGC	3 cut(s)	73, 344, 551
HpyF3I	CTNAG	2 cut(s)	339, 374
HpySE526I	ACGT	1 cut(s)	204
Hsp92II	CATG	2 cut(s)	269, 565
Kzo9I	GATC	2 cut(s)	127, 280
LmnI	GCTCC	1 cut(s)	75
Lsp1109I	GCAGC	5 cut(s)	79, 415, 524, 530, 532
LweI	GCATC	2 cut(s)	137, 541
MaeI	CTAG	2 cut(s)	20, 290
MaeII	ACGT	1 cut(s)	204
MaeIII	GTNAC	2 cut(s)	251, 602
MalI	GATC	2 cut(s)	129, 282
MboI	GATC	2 cut(s)	127, 280
MboII	GAAGA	3 cut(s)	91, 230, 419
MhlI	GDGCHC	1 cut(s)	201
MluCI	AATT	2 cut(s)	9, 588
MmeI	TCCRAC	3 cut(s)	105, 168, 360
MnlI	CCTC	6 cut(s)	152, 169, 175, 477, 624, 658
Mph1103I	ATGCAT	1 cut(s)	556
MroXI	GAANNNNTTC	1 cut(s)	99
MspI	CCGG	3 cut(s)	54, 180, 278
MwoI	GCNNNNNNNGC	3 cut(s)	73, 344, 551
NdeI	CATATG	1 cut(s)	301
NdeII	GATC	2 cut(s)	127, 280
NlaIII	CATG	2 cut(s)	269, 565
NlaIV	GGNNCC	2 cut(s)	163, 334
NmuCI	GTSAC	1 cut(s)	251
NsiI	ATGCAT	1 cut(s)	556
PagI	TCATGA	1 cut(s)	265
PceI	AGGCCT	1 cut(s)	18
PdmI	GAANNNNTTC	1 cut(s)	99
PfeI	GAWTC	2 cut(s)	191, 569
PkrI	GCNGC	6 cut(s)	69, 430, 464, 520, 539, 547
PpuMI	RGGWCCY	1 cut(s)	332
Psp5II	RGGWCCY	1 cut(s)	332
PspN4I	GGNNCC	2 cut(s)	163, 334
PspPI	GGNCC	4 cut(s)	162, 272, 296, 332
PspPPI	RGGWCCY	1 cut(s)	332
PstI	CTGCAG	1 cut(s)	370
RsaI	GTAC	1 cut(s)	372
RsaNI	GTAC	1 cut(s)	371
SatI	GCNGC	6 cut(s)	68, 429, 463, 519, 538, 546
Sau3AI	GATC	2 cut(s)	127, 280
Sau96I	GGNCC	4 cut(s)	162, 272, 296, 332
ScaI	AGTACT	1 cut(s)	372
SduI	GDGCHC	1 cut(s)	201
SfaNI	GCATC	2 cut(s)	137, 541
SfcI	CTRYAG	1 cut(s)	366
SinI	GGWCC	3 cut(s)	272, 296, 332
Sse9I	AATT	2 cut(s)	9, 588
SseBI	AGGCCT	1 cut(s)	18
SsiI	CCGC	4 cut(s)	74, 150, 336, 462
SspMI	CTAG	2 cut(s)	20, 290
StuI	AGGCCT	1 cut(s)	18
StyI	CCWWGG	1 cut(s)	598
TaaI	ACNGT	2 cut(s)	100, 257
TaiI	ACGT	1 cut(s)	207
TaqI	TCGA	1 cut(s)	172
TasI	AATT	2 cut(s)	9, 588
TatI	WGTACW	1 cut(s)	370
TauI	GCSGC	1 cut(s)	465
TfiI	GAWTC	2 cut(s)	191, 569
TscAI	CASTG	2 cut(s)	528, 547
TseFI	GTSAC	1 cut(s)	251
TseI	GCWGC	5 cut(s)	67, 428, 518, 537, 545
Tsp45I	GTSAC	1 cut(s)	251
TspDTI	ATGAA	4 cut(s)	131, 342, 506, 520
TspGWI	ACGGA	1 cut(s)	677
TspRI	CASTG	2 cut(s)	528, 547
VpaK11BI	GGWCC	3 cut(s)	272, 296, 332
XmnI	GAANNNNTTC	1 cut(s)	99
XspI	CTAG	2 cut(s)	20, 290
ZrmI	AGTACT	1 cut(s)	372
Zsp2I	ATGCAT	1 cut(s)	556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.