Rh7CG292500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0007555
Physical Location & Seq
Forward (+)
29862943 .. 29867117
4175 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG292500.1

Sequence Viewer

Length: 291 bp
ATGACTGCAAGCATAAAGTATAGAGATGAAGCATGGTGGGTGTTGGAGAAGTCAGAAGCTAATCTGAAGCATGTCTTGGTGTGTTCGAAGTTGGAGCGGGCAAAGTTTGATGGTGGATCTGATGGGGTGGACTGGCTGGGGTCGGTCGACCGTGGTGGTGGCTTGTGGTGCAATGGTGGCAACTATGGAGGGGCGCCACATTTGAGATGTTGGAATTGGGAACTTGCGATCAGATCTCGACTGCTTAGGCCGATTTGGGCTACTAGCAGTGGGGCTGTGGTCTGGGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.69

Weight (kDa)

8.55

Isoelectric Point (pI)

24.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 193
AccBSI CCGCTC 1 cut(s) 97
AccI GTMKAC 1 cut(s) 147
AciI CCGC 1 cut(s) 97
AclWI GGATC 1 cut(s) 124
AcuI CTGAAG 1 cut(s) 86
AcyI GRCGYC 1 cut(s) 194
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AluBI AGCT 1 cut(s) 59
AluI AGCT 1 cut(s) 59
AlwI GGATC 1 cut(s) 124
AoxI GGCC 1 cut(s) 248
AspLEI GCGC 1 cut(s) 196
AsuII TTCGAA 1 cut(s) 86
BanI GGYRCC 1 cut(s) 193
BccI CCATC 2 cut(s) 104, 116
BfaI CTAG 1 cut(s) 264
BfoI RGCGCY 1 cut(s) 197
BglII AGATCT 1 cut(s) 233
BmiI GGNNCC 1 cut(s) 195
Bpu10I CCTNAGC 1 cut(s) 245
Bpu14I TTCGAA 1 cut(s) 86
BsaHI GRCGYC 1 cut(s) 194
BsaJI CCNNGG 1 cut(s) 151
Bse1I ACTGG 1 cut(s) 137
Bse3DI GCAATG 1 cut(s) 178
BseDI CCNNGG 1 cut(s) 151
BseMI GCAATG 1 cut(s) 178
BseNI ACTGG 1 cut(s) 137
BseYI CCCAGC 1 cut(s) 136
Bsh1285I CGRYCG 2 cut(s) 147, 151
BshFI GGCC 1 cut(s) 250
BshNI GGYRCC 1 cut(s) 193
BsiEI CGRYCG 2 cut(s) 147, 151
BsnI GGCC 1 cut(s) 250
Bsp119I TTCGAA 1 cut(s) 86
Bsp143I GATC 3 cut(s) 116, 228, 233
BspACI CCGC 1 cut(s) 97
BspANI GGCC 1 cut(s) 250
BspLI GGNNCC 1 cut(s) 195
BspPI GGATC 1 cut(s) 124
BspT104I TTCGAA 1 cut(s) 86
BspT107I GGYRCC 1 cut(s) 193
BsrBI CCGCTC 1 cut(s) 97
BsrDI GCAATG 1 cut(s) 178
BsrI ACTGG 1 cut(s) 137
BssECI CCNNGG 1 cut(s) 151
BssMI GATC 3 cut(s) 116, 228, 233
BssNI GRCGYC 1 cut(s) 194
Bst4CI ACNGT 1 cut(s) 152
BstACI GRCGYC 1 cut(s) 194
BstBI TTCGAA 1 cut(s) 86
BstC8I GCNNGC 2 cut(s) 10, 99
BstDEI CTNAG 1 cut(s) 245
BstDSI CCRYGG 1 cut(s) 151
BstH2I RGCGCY 1 cut(s) 197
BstHHI GCGC 1 cut(s) 196
BstKTI GATC 3 cut(s) 119, 231, 236
BstMBI GATC 3 cut(s) 116, 228, 233
BstMCI CGRYCG 2 cut(s) 147, 151
BstMWI GCNNNNNNNGC 2 cut(s) 168, 177
BstNSI RCATGY 1 cut(s) 74
BstX2I RGATCY 2 cut(s) 116, 233
BstYI RGATCY 2 cut(s) 116, 233
BsuRI GGCC 1 cut(s) 250
BtgI CCRYGG 1 cut(s) 151
BtsI GCAGTG 1 cut(s) 274
BtsIMutI CAGTG 1 cut(s) 274
Cac8I GCNNGC 2 cut(s) 10, 99
CfoI GCGC 1 cut(s) 196
CviAII CATG 2 cut(s) 33, 71
CviJI RGCY 6 cut(s) 59, 136, 162, 250, 260, 275
CviKI_1 RGCY 6 cut(s) 59, 136, 162, 250, 260, 275
DdeI CTNAG 1 cut(s) 245
DinI GGCGCC 1 cut(s) 195
DpnI GATC 3 cut(s) 118, 230, 235
DpnII GATC 3 cut(s) 116, 228, 233
Eco57I CTGAAG 1 cut(s) 86
EgeI GGCGCC 1 cut(s) 195
EheI GGCGCC 1 cut(s) 195
FaeI CATG 2 cut(s) 36, 74
FaiI YATR 5 cut(s) 14, 21, 34, 72, 186
FalI AAGNNNNNCTT 2 cut(s) 59, 91
FatI CATG 2 cut(s) 32, 70
FauI CCCGC 1 cut(s) 90
FblI GTMKAC 1 cut(s) 147
FspBI CTAG 1 cut(s) 264
GlaI GCGC 1 cut(s) 195
GsaI CCCAGC 1 cut(s) 140
HaeII RGCGCY 1 cut(s) 197
HaeIII GGCC 1 cut(s) 250
HhaI GCGC 1 cut(s) 196
Hin1I GRCGYC 1 cut(s) 194
Hin1II CATG 2 cut(s) 36, 74
Hin6I GCGC 1 cut(s) 194
HinP1I GCGC 1 cut(s) 194
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
Hpy166II GTNNAC 2 cut(s) 130, 148
Hpy188I TCNGA 4 cut(s) 55, 66, 121, 233
Hpy188III TCNNGA 1 cut(s) 237
Hpy8I GTNNAC 2 cut(s) 130, 148
HpyCH4III ACNGT 1 cut(s) 152
HpyCH4V TGCA 2 cut(s) 8, 171
HpyF10VI GCNNNNNNNGC 2 cut(s) 168, 177
HpyF3I CTNAG 1 cut(s) 245
Hsp92I GRCGYC 1 cut(s) 194
Hsp92II CATG 2 cut(s) 36, 74
HspAI GCGC 1 cut(s) 194
KasI GGCGCC 1 cut(s) 193
Kzo9I GATC 3 cut(s) 116, 228, 233
LmnI GCTCC 1 cut(s) 94
LpnPI CCDG 3 cut(s) 118, 122, 268
MaeI CTAG 1 cut(s) 264
MalI GATC 3 cut(s) 118, 230, 235
MbiI CCGCTC 1 cut(s) 97
MboI GATC 3 cut(s) 116, 228, 233
MflI RGATCY 2 cut(s) 116, 233
MluCI AATT 1 cut(s) 214
Mly113I GGCGCC 1 cut(s) 194
MmeI TCCRAC 3 cut(s) 24, 72, 191
MnlI CCTC 1 cut(s) 182
MwoI GCNNNNNNNGC 2 cut(s) 168, 177
NarI GGCGCC 1 cut(s) 194
NdeII GATC 3 cut(s) 116, 228, 233
NlaIII CATG 2 cut(s) 36, 74
NlaIV GGNNCC 1 cut(s) 195
NspI RCATGY 1 cut(s) 74
NspV TTCGAA 1 cut(s) 86
PluTI GGCGCC 1 cut(s) 197
PspFI CCCAGC 1 cut(s) 136
PspN4I GGNNCC 1 cut(s) 195
PsuI RGATCY 2 cut(s) 116, 233
SalI GTCGAC 1 cut(s) 146
Sau3AI GATC 3 cut(s) 116, 228, 233
SetI ASST 1 cut(s) 61
SfoI GGCGCC 1 cut(s) 195
SfuI TTCGAA 1 cut(s) 86
Sse9I AATT 1 cut(s) 214
SsiI CCGC 1 cut(s) 97
SspDI GGCGCC 1 cut(s) 193
SspMI CTAG 1 cut(s) 264
TaaI ACNGT 1 cut(s) 152
TaqI TCGA 3 cut(s) 86, 147, 238
TaqII GACCGA 1 cut(s) 133
TasI AATT 1 cut(s) 214
TscAI CASTG 1 cut(s) 274
TspDTI ATGAA 1 cut(s) 42
TspRI CASTG 1 cut(s) 274
XceI RCATGY 1 cut(s) 74
XmiI GTMKAC 1 cut(s) 147
XspI CTAG 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.