Rh6DG325400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0007555
Physical Location & Seq
Reverse (-)
52968759 .. 52968989
231 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG325400.1

Sequence Viewer

Length: 231 bp
ATGGGATCGTTGGATCCCGGTGGTGGTTCGCGATGCACTGATGGAGGGGCCTCGCTTCTGAGAGGCTGGAGAGTTGGAATCGGGGTTCTGCGTTTTGCTGGTTTGTCGCCGGCATGGGCTATGCGAAGTCGTGGCTTTGATGGTGTTGCTGGGCCGTCAGAAGTGGTCGTCGGCGTCGATCTCGTCAGCGATGGCTATTGCAGTTTGGCATTCTCCATTGCCGATCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

7.66

Weight (kDa)

4.92

Isoelectric Point (pI)

37.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 31
AclWI GGATC 4 cut(s) 8, 13, 21, 218
AcyI GRCGYC 1 cut(s) 174
AfiI CCNNNNNNNGG 1 cut(s) 23
AloI GAACNNNNNNTCC 2 cut(s) 69, 101
AlwI GGATC 4 cut(s) 8, 13, 21, 218
AoxI GGCC 2 cut(s) 48, 152
AspS9I GGNCC 2 cut(s) 48, 152
AsuC2I CCSGG 1 cut(s) 18
BamHI GGATCC 1 cut(s) 13
BccI CCATC 3 cut(s) 35, 134, 185
BceAI ACGGC 1 cut(s) 139
BcnI CCSGG 1 cut(s) 18
Bme1390I CCNGG 1 cut(s) 18
BmgT120I GGNCC 2 cut(s) 48, 152
BmiI GGNNCC 2 cut(s) 15, 49
BmrFI CCNGG 1 cut(s) 18
BmsI GCATC 1 cut(s) 23
BpmI CTGGAG 1 cut(s) 88
BpuMI CCSGG 1 cut(s) 18
BsaHI GRCGYC 1 cut(s) 174
Bsc4I CCNNNNNNNGG 1 cut(s) 23
Bse118I RCCGGY 1 cut(s) 109
Bse3DI GCAATG 1 cut(s) 216
BseLI CCNNNNNNNGG 1 cut(s) 23
BseMI GCAATG 1 cut(s) 216
BseMII CTCAG 1 cut(s) 50
BseYI CCCAGC 1 cut(s) 149
Bsh1236I CGCG 1 cut(s) 31
BshFI GGCC 2 cut(s) 50, 154
BsiSI CCGG 2 cut(s) 18, 110
BslI CCNNNNNNNGG 1 cut(s) 23
BsmI GAATGC 1 cut(s) 209
BsnI GGCC 2 cut(s) 50, 154
Bsp143I GATC 4 cut(s) 5, 13, 178, 223
Bsp68I TCGCGA 1 cut(s) 31
BspANI GGCC 2 cut(s) 50, 154
BspCNI CTCAG 1 cut(s) 51
BspFNI CGCG 1 cut(s) 31
BspLI GGNNCC 2 cut(s) 15, 49
BspPI GGATC 4 cut(s) 8, 13, 21, 218
BsrDI GCAATG 1 cut(s) 216
BsrFI RCCGGY 1 cut(s) 109
BssAI RCCGGY 1 cut(s) 109
BssMI GATC 4 cut(s) 5, 13, 178, 223
BssNI GRCGYC 1 cut(s) 174
BstACI GRCGYC 1 cut(s) 174
BstC8I GCNNGC 1 cut(s) 111
BstDEI CTNAG 2 cut(s) 59, 228
BstFNI CGCG 1 cut(s) 31
BstKTI GATC 4 cut(s) 8, 16, 181, 226
BstMBI GATC 4 cut(s) 5, 13, 178, 223
BstSCI CCNGG 1 cut(s) 16
BstUI CGCG 1 cut(s) 31
BstX2I RGATCY 1 cut(s) 13
BstYI RGATCY 1 cut(s) 13
BsuRI GGCC 2 cut(s) 50, 154
BtgZI GCGATG 2 cut(s) 46, 204
BtsIMutI CAGTG 1 cut(s) 36
BtuMI TCGCGA 1 cut(s) 31
Cac8I GCNNGC 1 cut(s) 111
Cfr10I RCCGGY 1 cut(s) 109
Cfr13I GGNCC 2 cut(s) 48, 152
CseI GACGC 1 cut(s) 163
CviAII CATG 1 cut(s) 114
CviJI RGCY 6 cut(s) 50, 66, 119, 135, 154, 195
CviKI_1 RGCY 6 cut(s) 50, 66, 119, 135, 154, 195
DdeI CTNAG 2 cut(s) 59, 228
DpnI GATC 4 cut(s) 7, 15, 180, 225
DpnII GATC 4 cut(s) 5, 13, 178, 223
EcoO109I RGGNCCY 1 cut(s) 48
FaeI CATG 1 cut(s) 117
FaiI YATR 2 cut(s) 115, 122
FatI CATG 1 cut(s) 113
GsaI CCCAGC 1 cut(s) 153
GsuI CTGGAG 1 cut(s) 88
HaeIII GGCC 2 cut(s) 50, 154
HapII CCGG 2 cut(s) 18, 110
HgaI GACGC 1 cut(s) 163
Hin1I GRCGYC 1 cut(s) 174
Hin1II CATG 1 cut(s) 117
HinfI GANTC 1 cut(s) 78
HpaII CCGG 2 cut(s) 18, 110
Hpy188I TCNGA 2 cut(s) 60, 160
Hpy188III TCNNGA 1 cut(s) 30
Hpy99I CGWCG 2 cut(s) 173, 179
HpyCH4V TGCA 2 cut(s) 36, 201
HpyF3I CTNAG 2 cut(s) 59, 228
Hsp92I GRCGYC 1 cut(s) 174
Hsp92II CATG 1 cut(s) 117
KroI GCCGGC 1 cut(s) 109
KroNI GCCGGC 1 cut(s) 111
Kzo9I GATC 4 cut(s) 5, 13, 178, 223
LpnPI CCDG 5 cut(s) 31, 52, 84, 123, 135
LweI GCATC 1 cut(s) 23
MalI GATC 4 cut(s) 7, 15, 180, 225
MboI GATC 4 cut(s) 5, 13, 178, 223
MflI RGATCY 1 cut(s) 13
MmeI TCCRAC 1 cut(s) 55
MnlI CCTC 3 cut(s) 38, 56, 61
MroNI GCCGGC 1 cut(s) 109
MspI CCGG 2 cut(s) 18, 110
MspR9I CCNGG 1 cut(s) 18
Mva1269I GAATGC 1 cut(s) 209
MvnI CGCG 1 cut(s) 31
NaeI GCCGGC 1 cut(s) 111
NciI CCSGG 1 cut(s) 18
NdeII GATC 4 cut(s) 5, 13, 178, 223
NgoMIV GCCGGC 1 cut(s) 109
NlaIII CATG 1 cut(s) 117
NlaIV GGNNCC 2 cut(s) 15, 49
NruI TCGCGA 1 cut(s) 31
PcsI WCGNNNNNNNCGW 1 cut(s) 174
PctI GAATGC 1 cut(s) 209
PdiI GCCGGC 1 cut(s) 111
PfeI GAWTC 1 cut(s) 78
PspFI CCCAGC 1 cut(s) 149
PspN4I GGNNCC 2 cut(s) 15, 49
PspPI GGNCC 2 cut(s) 48, 152
PsuI RGATCY 1 cut(s) 13
RruI TCGCGA 1 cut(s) 31
Sau3AI GATC 4 cut(s) 5, 13, 178, 223
Sau96I GGNCC 2 cut(s) 48, 152
ScrFI CCNGG 1 cut(s) 18
SfaNI GCATC 1 cut(s) 23
StyD4I CCNGG 1 cut(s) 16
TaqI TCGA 1 cut(s) 177
TfiI GAWTC 1 cut(s) 78
TscAI CASTG 1 cut(s) 43
TspRI CASTG 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.