Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0007555

Physical Location & Seq

Genomic Coordinates Reverse (-)

15712320 .. 15724013

Gene Structure 11694 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG179000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGACGAAATTGTAGGCCTAGTCCTGATGTCTTTCTTTTGCGTCTCTTTTGTTGGTTGTGGCTCGGAGCTCCCAGAGAAGAAGTTTGATGGGGAAACGGTTCTTTTGGATTGGATGGGATCGTTGGATTGCGGTGGTGGTTCGCGATGCAGTGATGGAGGGGCCTCGCTTCTGAGAGGCTGGAGAGTTGGAATAGGGGTTCTGCGTTTTGCTAGTTTATCGCCGGCATGGGCTATGCGCACTACAGACGACTTTCGGATTCGCACGACCAATTGGTTATCATCTCCAGCTCAAAACACAGAAACACAGAACACCAAAAGCCTCAAACTTCAAAGTCCAGAGACCAACCCTCCTTACGTTCAACTCTTCTCCCATTTTCTCAGAATCCCATATTGTCATATGGCCTATGAAAACTCTGGGGCAACTTTAATTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

145

Amino Acids

15.99

Weight (kDa)

5.61

Isoelectric Point (pI)

39.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0007555)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0013651 RchiOBHm_Chr7g0197761
rosa_laevigata	RLG00000032036
rosa_roxburghii	Rroxscaffold_1G00062960 Rroxscaffold_2G00125920
rosa_rugosa	Rorug02G0448100 Rorug04G0327200 Rorug05G0011500
rosa_samantha	Rh1CG069900 Rh1DG074500 Rh2DG534400 Rh3AG163500 Rh3AG171800 Rh3BG189000 Rh3BG197200 Rh3BG240300 Rh3CG179000 Rh3CG188200 Rh4DG175900 Rh5CG114300 Rh5DG101000 Rh6DG325400 Rh7AG273400 Rh7CG176000 Rh7CG292500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	239
AccII	CGCG	1 cut(s)	145
AciI	CCGC	1 cut(s)	132
AclWI	GGATC	1 cut(s)	127
AgsI	TTSAA	2 cut(s)	332, 362
AloI	GAACNNNNNNTCC	2 cut(s)	183, 215
AluBI	AGCT	2 cut(s)	70, 290
AluI	AGCT	2 cut(s)	70, 290
Alw21I	GWGCWC	1 cut(s)	72
Alw26I	GTCTC	2 cut(s)	49, 335
AlwI	GGATC	1 cut(s)	127
AoxI	GGCC	3 cut(s)	16, 162, 402
Asp700I	GAANNNNTTC	1 cut(s)	99
AspLEI	GCGC	1 cut(s)	240
AspS9I	GGNCC	1 cut(s)	162
BanII	GRGCYC	1 cut(s)	72
Bbv12I	GWGCWC	1 cut(s)	72
BccI	CCATC	3 cut(s)	83, 109, 149
BcoDI	GTCTC	2 cut(s)	49, 335
BfaI	CTAG	2 cut(s)	20, 213
BfmI	CTRYAG	1 cut(s)	243
BmgT120I	GGNCC	1 cut(s)	162
BmiI	GGNNCC	1 cut(s)	163
BmsI	GCATC	1 cut(s)	137
BpmI	CTGGAG	2 cut(s)	202, 270
BsaI	GGTCTC	1 cut(s)	335
BsaXI	ACNNNNNCTCC	2 cut(s)	334, 364
Bse118I	RCCGGY	1 cut(s)	223
BseGI	GGATG	1 cut(s)	120
BseMII	CTCAG	2 cut(s)	164, 394
Bsh1236I	CGCG	1 cut(s)	145
BshFI	GGCC	3 cut(s)	18, 164, 404
BsiHKAI	GWGCWC	1 cut(s)	72
BsiSI	CCGG	1 cut(s)	224
BsmAI	GTCTC	2 cut(s)	49, 335
BsmBI	CGTCTC	1 cut(s)	49
BsnI	GGCC	3 cut(s)	18, 164, 404
Bso31I	GGTCTC	1 cut(s)	335
Bsp1286I	GDGCHC	1 cut(s)	72
Bsp143I	GATC	1 cut(s)	119
Bsp68I	TCGCGA	1 cut(s)	145
BspACI	CCGC	1 cut(s)	132
BspANI	GGCC	3 cut(s)	18, 164, 404
BspCNI	CTCAG	2 cut(s)	165, 393
BspFNI	CGCG	1 cut(s)	145
BspLI	GGNNCC	1 cut(s)	163
BspPI	GGATC	1 cut(s)	127
BspTNI	GGTCTC	1 cut(s)	335
BsrFI	RCCGGY	1 cut(s)	223
BssAI	RCCGGY	1 cut(s)	223
BssMI	GATC	1 cut(s)	119
Bst4CI	ACNGT	1 cut(s)	100
Bst6I	CTCTTC	1 cut(s)	371
BstC8I	GCNNGC	1 cut(s)	225
BstDEI	CTNAG	2 cut(s)	173, 380
BstF5I	GGATG	1 cut(s)	120
BstFNI	CGCG	1 cut(s)	145
BstHHI	GCGC	1 cut(s)	240
BstKTI	GATC	1 cut(s)	122
BstMAI	GTCTC	2 cut(s)	49, 335
BstMBI	GATC	1 cut(s)	119
BstSFI	CTRYAG	1 cut(s)	243
BstUI	CGCG	1 cut(s)	145
BsuRI	GGCC	3 cut(s)	18, 164, 404
BtgZI	GCGATG	1 cut(s)	160
BtsCI	GGATG	1 cut(s)	120
BtsI	GCAGTG	1 cut(s)	157
BtsIMutI	CAGTG	1 cut(s)	157
BtuMI	TCGCGA	1 cut(s)	145
Cac8I	GCNNGC	1 cut(s)	225
CfoI	GCGC	1 cut(s)	240
Cfr10I	RCCGGY	1 cut(s)	223
Cfr13I	GGNCC	1 cut(s)	162
CseI	GACGC	1 cut(s)	31
CviAII	CATG	1 cut(s)	228
CviJI	RGCY	9 cut(s)	18, 63, 70, 164, 180, 233, 290, 321, 404
CviKI_1	RGCY	9 cut(s)	18, 63, 70, 164, 180, 233, 290, 321, 404
DdeI	CTNAG	2 cut(s)	173, 380
DpnI	GATC	1 cut(s)	121
DpnII	GATC	1 cut(s)	119
Eam1104I	CTCTTC	1 cut(s)	371
EarI	CTCTTC	1 cut(s)	371
Ecl136II	GAGCTC	1 cut(s)	70
Eco147I	AGGCCT	1 cut(s)	18
Eco24I	GRGCYC	1 cut(s)	72
Eco31I	GGTCTC	1 cut(s)	335
Eco53kI	GAGCTC	1 cut(s)	70
EcoICRI	GAGCTC	1 cut(s)	70
EcoO109I	RGGNCCY	1 cut(s)	162
EcoT38I	GRGCYC	1 cut(s)	72
Esp3I	CGTCTC	1 cut(s)	49
FaeI	CATG	1 cut(s)	231
FaiI	YATR	7 cut(s)	229, 236, 391, 399, 401, 408, 436
FatI	CATG	1 cut(s)	227
FauNDI	CATATG	1 cut(s)	399
FokI	GGATG	1 cut(s)	127
FriOI	GRGCYC	1 cut(s)	72
FspAI	RTGCGCAY	1 cut(s)	239
FspBI	CTAG	2 cut(s)	20, 213
FspI	TGCGCA	1 cut(s)	239
GlaI	GCGC	1 cut(s)	239
GsuI	CTGGAG	2 cut(s)	202, 270
HaeIII	GGCC	3 cut(s)	18, 164, 404
HapII	CCGG	1 cut(s)	224
HgaI	GACGC	1 cut(s)	31
HhaI	GCGC	1 cut(s)	240
Hin1II	CATG	1 cut(s)	231
Hin6I	GCGC	1 cut(s)	238
HinP1I	GCGC	1 cut(s)	238
HinfI	GANTC	2 cut(s)	259, 384
HpaII	CCGG	1 cut(s)	224
Hpy188I	TCNGA	4 cut(s)	67, 174, 258, 383
Hpy188III	TCNNGA	3 cut(s)	25, 144, 338
HpyCH4III	ACNGT	1 cut(s)	100
HpyCH4IV	ACGT	1 cut(s)	357
HpyCH4V	TGCA	1 cut(s)	150
HpyF3I	CTNAG	2 cut(s)	173, 380
HpySE526I	ACGT	1 cut(s)	357
Hsp92II	CATG	1 cut(s)	231
HspAI	GCGC	1 cut(s)	238
KroI	GCCGGC	1 cut(s)	223
KroNI	GCCGGC	1 cut(s)	225
Kzo9I	GATC	1 cut(s)	119
LmnI	GCTCC	2 cut(s)	67, 75
LpnPI	CCDG	7 cut(s)	38, 87, 166, 237, 300, 351, 402
LweI	GCATC	1 cut(s)	137
MaeI	CTAG	2 cut(s)	20, 213
MaeII	ACGT	1 cut(s)	357
MalI	GATC	1 cut(s)	121
MboI	GATC	1 cut(s)	119
MboII	GAAGA	2 cut(s)	91, 358
MfeI	CAATTG	1 cut(s)	271
MhlI	GDGCHC	1 cut(s)	72
MluCI	AATT	3 cut(s)	9, 271, 429
MmeI	TCCRAC	2 cut(s)	105, 169
MnlI	CCTC	5 cut(s)	152, 170, 175, 332, 360
MroNI	GCCGGC	1 cut(s)	223
MroXI	GAANNNNTTC	1 cut(s)	99
MseI	TTAA	1 cut(s)	428
MspI	CCGG	1 cut(s)	224
MunI	CAATTG	1 cut(s)	271
MvnI	CGCG	1 cut(s)	145
NaeI	GCCGGC	1 cut(s)	225
NdeI	CATATG	1 cut(s)	399
NdeII	GATC	1 cut(s)	119
NgoMIV	GCCGGC	1 cut(s)	223
NlaIII	CATG	1 cut(s)	231
NlaIV	GGNNCC	1 cut(s)	163
NruI	TCGCGA	1 cut(s)	145
NsbI	TGCGCA	1 cut(s)	239
PceI	AGGCCT	1 cut(s)	18
PdiI	GCCGGC	1 cut(s)	225
PdmI	GAANNNNTTC	1 cut(s)	99
PfeI	GAWTC	2 cut(s)	259, 384
Psp124BI	GAGCTC	1 cut(s)	72
PspN4I	GGNNCC	1 cut(s)	163
PspPI	GGNCC	1 cut(s)	162
RruI	TCGCGA	1 cut(s)	145
SacI	GAGCTC	1 cut(s)	72
SaqAI	TTAA	1 cut(s)	428
Sau3AI	GATC	1 cut(s)	119
Sau96I	GGNCC	1 cut(s)	162
SduI	GDGCHC	1 cut(s)	72
SetI	ASST	3 cut(s)	72, 292, 360
SfaNI	GCATC	1 cut(s)	137
SfcI	CTRYAG	1 cut(s)	243
Sse9I	AATT	3 cut(s)	9, 271, 429
SseBI	AGGCCT	1 cut(s)	18
SsiI	CCGC	1 cut(s)	132
SspMI	CTAG	2 cut(s)	20, 213
SstI	GAGCTC	1 cut(s)	72
StuI	AGGCCT	1 cut(s)	18
TaaI	ACNGT	1 cut(s)	100
TaiI	ACGT	1 cut(s)	360
TasI	AATT	3 cut(s)	9, 271, 429
TfiI	GAWTC	2 cut(s)	259, 384
Tru1I	TTAA	1 cut(s)	428
Tru9I	TTAA	1 cut(s)	428
TscAI	CASTG	1 cut(s)	157
TspDTI	ATGAA	1 cut(s)	423
TspRI	CASTG	1 cut(s)	157
XmnI	GAANNNNTTC	1 cut(s)	99
XspI	CTAG	2 cut(s)	20, 213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.