Rh3CG188200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0007555
Physical Location & Seq
Forward (+)
16578166 .. 16578534
369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG188200.1

Sequence Viewer

Length: 369 bp
ATGAAAACTCTTCGATGTAGCTCTGCTAGGGTTTTGAGCACCGTCGTCTCTGGTGGAGGCAACTCCTATACCTCATCCATAATCATGGGTAAAAGTGCAGGTCTAGTCCTGTTGTCATTCATTTTTGTTTCTTTTGCTGGTTATAGTGTCTCGGGGTGCCCGAAGGTGATGTGGGCGAAGTTTGATGGTGAATCTGTTCTAGTTGATTGGTTGGGATTGGTCGACCATGGTGGTGTTTTGGGATGCAATGTTGACTGCTTTGGATGGACACTGCATCTGAGAGGCTGGAAAGTTAGAGTAGGAGACCTGTGTTTGGACTTCGATGGTTTAGGGTCGGCTTGGGCTATGTGCGATGGGGTTATGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

12.93

Weight (kDa)

6.68

Isoelectric Point (pI)

15.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 89
AccB1I GGYRCC 1 cut(s) 156
AccI GTMKAC 1 cut(s) 222
AfiI CCNNNNNNNGG 1 cut(s) 313
AluBI AGCT 1 cut(s) 21
AluI AGCT 1 cut(s) 21
Alw21I GWGCWC 1 cut(s) 41
Alw26I GTCTC 3 cut(s) 52, 154, 297
Ama87I CYCGRG 1 cut(s) 151
Asp700I GAANNNNTTC 1 cut(s) 195
AsuHPI GGTGA 2 cut(s) 178, 200
AvaI CYCGRG 1 cut(s) 151
BaeGI GKGCMC 1 cut(s) 161
BanI GGYRCC 1 cut(s) 156
Bbv12I GWGCWC 1 cut(s) 41
BccI CCATC 4 cut(s) 179, 258, 317, 347
BcoDI GTCTC 3 cut(s) 52, 154, 297
BfaI CTAG 3 cut(s) 27, 104, 200
BfuAI ACCTGC 1 cut(s) 89
BmeT110I CYCGRG 1 cut(s) 151
BmiI GGNNCC 1 cut(s) 158
BmsI GCATC 2 cut(s) 233, 283
BsaI GGTCTC 1 cut(s) 297
BsaJI CCNNGG 1 cut(s) 226
Bsc4I CCNNNNNNNGG 1 cut(s) 313
Bse3DI GCAATG 1 cut(s) 253
BseDI CCNNGG 1 cut(s) 226
BseGI GGATG 3 cut(s) 74, 248, 269
BseLI CCNNNNNNNGG 1 cut(s) 313
BseMI GCAATG 1 cut(s) 253
BseMII CTCAG 1 cut(s) 269
BseSI GKGCMC 1 cut(s) 161
BsgI GTGCAG 1 cut(s) 117
BshNI GGYRCC 1 cut(s) 156
BsiHKAI GWGCWC 1 cut(s) 41
BsiHKCI CYCGRG 1 cut(s) 151
BslI CCNNNNNNNGG 1 cut(s) 313
BsmAI GTCTC 3 cut(s) 52, 154, 297
BsmBI CGTCTC 1 cut(s) 52
Bso31I GGTCTC 1 cut(s) 297
BsoBI CYCGRG 1 cut(s) 151
Bsp1286I GDGCHC 2 cut(s) 41, 161
Bsp19I CCATGG 1 cut(s) 226
BspCNI CTCAG 1 cut(s) 270
BspLI GGNNCC 1 cut(s) 158
BspMI ACCTGC 1 cut(s) 89
BspT107I GGYRCC 1 cut(s) 156
BspTNI GGTCTC 1 cut(s) 297
BsrDI GCAATG 1 cut(s) 253
BssECI CCNNGG 1 cut(s) 226
BssT1I CCWWGG 1 cut(s) 226
Bst4CI ACNGT 1 cut(s) 43
Bst6I CTCTTC 1 cut(s) 15
BstDEI CTNAG 1 cut(s) 278
BstDSI CCRYGG 1 cut(s) 226
BstF5I GGATG 3 cut(s) 74, 248, 269
BstMAI GTCTC 3 cut(s) 52, 154, 297
BstSLI GKGCMC 1 cut(s) 161
BstXI CCANNNNNNTGG 1 cut(s) 85
BtgI CCRYGG 1 cut(s) 226
BtsCI GGATG 3 cut(s) 74, 248, 269
BtsI GCAGTG 1 cut(s) 269
BtsIMutI CAGTG 1 cut(s) 269
BveI ACCTGC 1 cut(s) 89
CviAII CATG 2 cut(s) 85, 227
CviJI RGCY 4 cut(s) 21, 285, 338, 344
CviKI_1 RGCY 4 cut(s) 21, 285, 338, 344
DdeI CTNAG 1 cut(s) 278
Eam1104I CTCTTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 15
Eco130I CCWWGG 1 cut(s) 226
Eco31I GGTCTC 1 cut(s) 297
Eco88I CYCGRG 1 cut(s) 151
EcoT14I CCWWGG 1 cut(s) 226
ErhI CCWWGG 1 cut(s) 226
Esp3I CGTCTC 1 cut(s) 52
FaeI CATG 2 cut(s) 88, 230
FaiI YATR 7 cut(s) 69, 80, 86, 144, 228, 347, 362
FatI CATG 2 cut(s) 84, 226
FblI GTMKAC 1 cut(s) 222
FokI GGATG 3 cut(s) 61, 255, 276
FspBI CTAG 3 cut(s) 27, 104, 200
Hin1II CATG 2 cut(s) 88, 230
HincII GTYRAC 2 cut(s) 223, 253
HindII GTYRAC 2 cut(s) 223, 253
HinfI GANTC 1 cut(s) 191
HphI GGTGA 2 cut(s) 178, 200
Hpy166II GTNNAC 2 cut(s) 223, 253
Hpy188I TCNGA 1 cut(s) 279
Hpy8I GTNNAC 2 cut(s) 223, 253
Hpy99I CGWCG 1 cut(s) 47
HpyAV CCTTC 1 cut(s) 157
HpyCH4III ACNGT 1 cut(s) 43
HpyCH4V TGCA 3 cut(s) 98, 246, 274
HpyF3I CTNAG 1 cut(s) 278
Hsp92II CATG 2 cut(s) 88, 230
LpnPI CCDG 6 cut(s) 36, 84, 122, 123, 271, 320
LweI GCATC 2 cut(s) 233, 283
MaeI CTAG 3 cut(s) 27, 104, 200
MhlI GDGCHC 2 cut(s) 41, 161
MnlI CCTC 3 cut(s) 50, 82, 275
MroXI GAANNNNTTC 1 cut(s) 195
MslI CAYNNNNRTG 2 cut(s) 83, 231
NcoI CCATGG 1 cut(s) 226
NlaIII CATG 2 cut(s) 88, 230
NlaIV GGNNCC 1 cut(s) 158
PcsI WCGNNNNNNNCGW 1 cut(s) 158
PdmI GAANNNNTTC 1 cut(s) 195
PfeI GAWTC 1 cut(s) 191
PspN4I GGNNCC 1 cut(s) 158
RseI CAYNNNNRTG 2 cut(s) 83, 231
SalI GTCGAC 1 cut(s) 221
SduI GDGCHC 2 cut(s) 41, 161
SetI ASST 5 cut(s) 23, 74, 103, 168, 309
SfaNI GCATC 2 cut(s) 233, 283
SmiMI CAYNNNNRTG 2 cut(s) 83, 231
SspMI CTAG 3 cut(s) 27, 104, 200
StyI CCWWGG 1 cut(s) 226
TaaI ACNGT 1 cut(s) 43
TaqI TCGA 3 cut(s) 13, 222, 321
TfiI GAWTC 1 cut(s) 191
TscAI CASTG 1 cut(s) 276
TspDTI ATGAA 2 cut(s) 17, 109
TspRI CASTG 1 cut(s) 276
XmiI GTMKAC 1 cut(s) 222
XmnI GAANNNNTTC 1 cut(s) 195
XspI CTAG 3 cut(s) 27, 104, 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.