Rh2DG534400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0007555
Physical Location & Seq
Reverse (-)
76477577 .. 76477945
369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG534400.1

Sequence Viewer

Length: 369 bp
ATGATCTCCCGACCTAGCTCTGCTAGGGCTTTGAGCGCTGCCGCATCTGGTGGTCGCGGCTCTTACACCTTCTCCATTTTCATGGACAAAATTGCAAGCCTAGTCCTACTGTCTTTCTTTTGTGTCTCTTTTGCTGGTTGTGTCTCAGAGCTTTTGGAGATGAAGTTTGATGGGGAGACGGTTCTTTTGGATTGGATGGGGTCGTTGGATCGCAATGCAGTGATGGAAGGGCCTTCGCTTTTGAGAGGTTGGGAAGTTGGAATTGGGGTTCTGTGTTTTGTTGGTTTGCCATCGGCTTGGGCTATGCGAAGTCGTGGCTTTGATGGTGTTGCTAGGTCGTCAGAAGTGATTGCCGGTGTCGATCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

12.98

Weight (kDa)

4.99

Isoelectric Point (pI)

32.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 57
AciI CCGC 2 cut(s) 42, 57
AclWI GGATC 1 cut(s) 216
AfeI AGCGCT 1 cut(s) 37
AjuI GAANNNNNNNTTGG 2 cut(s) 246, 278
AloI GAACNNNNNNTCC 2 cut(s) 252, 284
AluBI AGCT 2 cut(s) 18, 151
AluI AGCT 2 cut(s) 18, 151
Alw26I GTCTC 3 cut(s) 130, 148, 170
AlwI GGATC 1 cut(s) 216
Aor51HI AGCGCT 1 cut(s) 37
AoxI GGCC 1 cut(s) 230
ApeKI GCWGC 1 cut(s) 38
ArsI GACNNNNNNTTYG 2 cut(s) 169, 201
AspLEI GCGC 1 cut(s) 38
AspS9I GGNCC 1 cut(s) 230
BbvI GCAGC 1 cut(s) 25
BccI CCATC 5 cut(s) 164, 190, 217, 298, 317
BcoDI GTCTC 3 cut(s) 130, 148, 170
BfaI CTAG 4 cut(s) 15, 24, 101, 333
BfoI RGCGCY 1 cut(s) 39
BisI GCNGC 3 cut(s) 39, 42, 58
BlsI GCNGC 3 cut(s) 40, 43, 59
BmgT120I GGNCC 1 cut(s) 230
BmsI GCATC 1 cut(s) 53
BsaXI ACNNNNNCTCC 4 cut(s) 56, 86, 149, 179
Bse118I RCCGGY 1 cut(s) 353
Bse3DI GCAATG 1 cut(s) 220
BseGI GGATG 1 cut(s) 201
BseMI GCAATG 1 cut(s) 220
BseMII CTCAG 1 cut(s) 159
BseXI GCAGC 1 cut(s) 25
Bsh1236I CGCG 1 cut(s) 57
BshFI GGCC 1 cut(s) 232
BsiSI CCGG 1 cut(s) 354
BsmAI GTCTC 3 cut(s) 130, 148, 170
BsmBI CGTCTC 1 cut(s) 170
BsnI GGCC 1 cut(s) 232
Bsp143I GATC 3 cut(s) 3, 208, 361
BspACI CCGC 2 cut(s) 42, 57
BspANI GGCC 1 cut(s) 232
BspCNI CTCAG 1 cut(s) 158
BspFNI CGCG 1 cut(s) 57
BspPI GGATC 1 cut(s) 216
BsrDI GCAATG 1 cut(s) 220
BsrFI RCCGGY 1 cut(s) 353
BssAI RCCGGY 1 cut(s) 353
BssMI GATC 3 cut(s) 3, 208, 361
Bst4CI ACNGT 2 cut(s) 111, 181
BstC8I GCNNGC 1 cut(s) 97
BstDEI CTNAG 1 cut(s) 145
BstF5I GGATG 1 cut(s) 201
BstFNI CGCG 1 cut(s) 57
BstH2I RGCGCY 1 cut(s) 39
BstHHI GCGC 1 cut(s) 38
BstKTI GATC 3 cut(s) 6, 211, 364
BstMAI GTCTC 3 cut(s) 130, 148, 170
BstMBI GATC 3 cut(s) 3, 208, 361
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstUI CGCG 1 cut(s) 57
BstV1I GCAGC 1 cut(s) 25
BstXI CCANNNNNNTGG 2 cut(s) 82, 297
BsuRI GGCC 1 cut(s) 232
BtsCI GGATG 1 cut(s) 201
BtsI GCAGTG 1 cut(s) 225
BtsIMutI CAGTG 1 cut(s) 225
Cac8I GCNNGC 1 cut(s) 97
CfoI GCGC 1 cut(s) 38
Cfr10I RCCGGY 1 cut(s) 353
Cfr13I GGNCC 1 cut(s) 230
CviAII CATG 1 cut(s) 82
CviJI RGCY 9 cut(s) 18, 29, 60, 99, 151, 232, 296, 302, 318
CviKI_1 RGCY 9 cut(s) 18, 29, 60, 99, 151, 232, 296, 302, 318
DdeI CTNAG 1 cut(s) 145
DpnI GATC 3 cut(s) 5, 210, 363
DpnII GATC 3 cut(s) 3, 208, 361
Eco47III AGCGCT 1 cut(s) 37
EcoO109I RGGNCCY 1 cut(s) 230
Esp3I CGTCTC 1 cut(s) 170
FaeI CATG 1 cut(s) 85
FaiI YATR 2 cut(s) 83, 305
FatI CATG 1 cut(s) 81
Fnu4HI GCNGC 3 cut(s) 39, 42, 58
FokI GGATG 1 cut(s) 208
Fsp4HI GCNGC 3 cut(s) 39, 42, 58
FspBI CTAG 4 cut(s) 15, 24, 101, 333
GlaI GCGC 1 cut(s) 37
GluI GCNGC 3 cut(s) 39, 42, 58
HaeII RGCGCY 1 cut(s) 39
HaeIII GGCC 1 cut(s) 232
HapII CCGG 1 cut(s) 354
HhaI GCGC 1 cut(s) 38
Hin1II CATG 1 cut(s) 85
Hin6I GCGC 1 cut(s) 36
HinP1I GCGC 1 cut(s) 36
HpaII CCGG 1 cut(s) 354
Hpy188I TCNGA 2 cut(s) 148, 343
Hpy188III TCNNGA 1 cut(s) 9
HpyAV CCTTC 3 cut(s) 79, 221, 243
HpyCH4III ACNGT 2 cut(s) 111, 181
HpyCH4V TGCA 2 cut(s) 95, 218
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpyF3I CTNAG 1 cut(s) 145
Hsp92II CATG 1 cut(s) 85
HspAI GCGC 1 cut(s) 36
Kzo9I GATC 3 cut(s) 3, 208, 361
LpnPI CCDG 2 cut(s) 33, 120
Lsp1109I GCAGC 1 cut(s) 25
LweI GCATC 1 cut(s) 53
MaeI CTAG 4 cut(s) 15, 24, 101, 333
MalI GATC 3 cut(s) 5, 210, 363
MboI GATC 3 cut(s) 3, 208, 361
MluCI AATT 2 cut(s) 90, 261
MmeI TCCRAC 2 cut(s) 186, 238
MnlI CCTC 1 cut(s) 239
MslI CAYNNNNRTG 1 cut(s) 80
MspI CCGG 1 cut(s) 354
MvnI CGCG 1 cut(s) 57
MwoI GCNNNNNNNGC 1 cut(s) 35
NdeII GATC 3 cut(s) 3, 208, 361
NlaIII CATG 1 cut(s) 85
PkrI GCNGC 3 cut(s) 40, 43, 59
PspPI GGNCC 1 cut(s) 230
RseI CAYNNNNRTG 1 cut(s) 80
SatI GCNGC 3 cut(s) 39, 42, 58
Sau3AI GATC 3 cut(s) 3, 208, 361
Sau96I GGNCC 1 cut(s) 230
SetI ASST 6 cut(s) 16, 20, 71, 153, 250, 338
SfaNI GCATC 1 cut(s) 53
SmiMI CAYNNNNRTG 1 cut(s) 80
Sse9I AATT 2 cut(s) 90, 261
SsiI CCGC 2 cut(s) 42, 57
SspMI CTAG 4 cut(s) 15, 24, 101, 333
TaaI ACNGT 2 cut(s) 111, 181
TaqI TCGA 1 cut(s) 360
TasI AATT 2 cut(s) 90, 261
TauI GCSGC 2 cut(s) 44, 60
TscAI CASTG 1 cut(s) 225
TseI GCWGC 1 cut(s) 38
TspDTI ATGAA 2 cut(s) 70, 176
TspRI CASTG 1 cut(s) 225
XspI CTAG 4 cut(s) 15, 24, 101, 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.