Rh5DG101000

serine-threonine kinase receptor-associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0007555
Physical Location & Seq
Forward (+)
9233841 .. 9234314
474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG101000.1

Sequence Viewer

Length: 279 bp
ATGAATGGAGACACTGCTACTATTTGGAACCTTACATTTAACCCTGTGGTAGAGCTATATATGCCACGCTTATCAGAATCAGCCTATTTCAGACCACAAAATGATATTTTGATTGCTGGAAGAGATGATAGACTGGTTCGTATACTGAACATCAATGATCGTACTGAGATTGATGCCGCAGGCAATGGGTTTCACATGGGTCCCATTAAGTGTGTTAGCTTCTCTCCAAATGGCAAGTCATATGCAACAAGATCCCGAGACGGAAGAACGATAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
WD40

Protein Analysis

92

Amino Acids

10.35

Weight (kDa)

7.92

Isoelectric Point (pI)

47.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 142
AciI CCGC 1 cut(s) 177
AclWI GGATC 1 cut(s) 246
AfaI GTAC 1 cut(s) 163
AluBI AGCT 2 cut(s) 55, 219
AluI AGCT 2 cut(s) 55, 219
Alw26I GTCTC 2 cut(s) 3, 252
AlwI GGATC 1 cut(s) 246
Ama87I CYCGRG 1 cut(s) 255
ArsI GACNNNNNNTTYG 2 cut(s) 221, 253
AspS9I GGNCC 1 cut(s) 200
AvaI CYCGRG 1 cut(s) 255
AvaII GGWCC 1 cut(s) 200
BcoDI GTCTC 2 cut(s) 3, 252
BisI GCNGC 1 cut(s) 177
BlsI GCNGC 1 cut(s) 178
Bme18I GGWCC 1 cut(s) 200
BmeT110I CYCGRG 1 cut(s) 255
BmgT120I GGNCC 1 cut(s) 200
BmiI GGNNCC 3 cut(s) 29, 201, 202
BmsI GCATC 1 cut(s) 163
Bse1I ACTGG 1 cut(s) 138
Bse3DI GCAATG 1 cut(s) 190
BseMI GCAATG 1 cut(s) 190
BseMII CTCAG 1 cut(s) 156
BseNI ACTGG 1 cut(s) 138
BsiHKCI CYCGRG 1 cut(s) 255
BslFI GGGAC 1 cut(s) 186
BsmAI GTCTC 2 cut(s) 3, 252
BsmBI CGTCTC 1 cut(s) 252
BsmFI GGGAC 1 cut(s) 186
BsoBI CYCGRG 1 cut(s) 255
Bsp143I GATC 2 cut(s) 157, 251
BspACI CCGC 1 cut(s) 177
BspCNI CTCAG 1 cut(s) 157
BspLI GGNNCC 3 cut(s) 29, 201, 202
BspPI GGATC 1 cut(s) 246
BsrDI GCAATG 1 cut(s) 190
BsrI ACTGG 1 cut(s) 138
BssMI GATC 2 cut(s) 157, 251
BssNAI GTATAC 1 cut(s) 143
Bst1107I GTATAC 1 cut(s) 143
Bst6I CTCTTC 1 cut(s) 115
BstC8I GCNNGC 1 cut(s) 181
BstDEI CTNAG 1 cut(s) 165
BstKTI GATC 2 cut(s) 160, 254
BstMAI GTCTC 2 cut(s) 3, 252
BstMBI GATC 2 cut(s) 157, 251
BstMWI GCNNNNNNNGC 1 cut(s) 61
BstX2I RGATCY 1 cut(s) 251
BstYI RGATCY 1 cut(s) 251
BstZ17I GTATAC 1 cut(s) 143
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 1 cut(s) 12
Cac8I GCNNGC 1 cut(s) 181
Cfr13I GGNCC 1 cut(s) 200
Csp6I GTAC 1 cut(s) 162
CviAII CATG 1 cut(s) 196
CviJI RGCY 3 cut(s) 55, 83, 219
CviKI_1 RGCY 3 cut(s) 55, 83, 219
CviQI GTAC 1 cut(s) 162
DdeI CTNAG 1 cut(s) 165
DpnI GATC 2 cut(s) 159, 253
DpnII GATC 2 cut(s) 157, 251
Eam1104I CTCTTC 1 cut(s) 115
EarI CTCTTC 1 cut(s) 115
Eco47I GGWCC 1 cut(s) 200
Eco88I CYCGRG 1 cut(s) 255
EcoO109I RGGNCCY 1 cut(s) 200
Esp3I CGTCTC 1 cut(s) 252
FaeI CATG 1 cut(s) 199
FaiI YATR 7 cut(s) 58, 60, 62, 143, 197, 241, 243
FaqI GGGAC 1 cut(s) 186
FatI CATG 1 cut(s) 195
FauNDI CATATG 1 cut(s) 241
FblI GTMKAC 1 cut(s) 142
Fnu4HI GCNGC 1 cut(s) 177
Fsp4HI GCNGC 1 cut(s) 177
GluI GCNGC 1 cut(s) 177
Hin1II CATG 1 cut(s) 199
HinfI GANTC 1 cut(s) 77
Hpy166II GTNNAC 1 cut(s) 143
Hpy188I TCNGA 2 cut(s) 76, 92
Hpy188III TCNNGA 1 cut(s) 255
Hpy8I GTNNAC 1 cut(s) 143
HpyCH4V TGCA 1 cut(s) 245
HpyF10VI GCNNNNNNNGC 1 cut(s) 61
HpyF3I CTNAG 1 cut(s) 165
Hsp92II CATG 1 cut(s) 199
KflI GGGWCCC 1 cut(s) 200
Kzo9I GATC 2 cut(s) 157, 251
LpnPI CCDG 4 cut(s) 57, 102, 119, 165
LweI GCATC 1 cut(s) 163
MalI GATC 2 cut(s) 159, 253
MboI GATC 2 cut(s) 157, 251
MboII GAAGA 2 cut(s) 132, 276
MflI RGATCY 1 cut(s) 251
MluCI AATT 1 cut(s) 273
MseI TTAA 2 cut(s) 39, 207
MwoI GCNNNNNNNGC 1 cut(s) 61
NdeI CATATG 1 cut(s) 241
NdeII GATC 2 cut(s) 157, 251
NlaIII CATG 1 cut(s) 199
NlaIV GGNNCC 3 cut(s) 29, 201, 202
PfeI GAWTC 1 cut(s) 77
PkrI GCNGC 1 cut(s) 178
PpuMI RGGWCCY 1 cut(s) 200
Psp5II RGGWCCY 1 cut(s) 200
PspN4I GGNNCC 3 cut(s) 29, 201, 202
PspPI GGNCC 1 cut(s) 200
PspPPI RGGWCCY 1 cut(s) 200
PsuI RGATCY 1 cut(s) 251
RsaI GTAC 1 cut(s) 163
RsaNI GTAC 1 cut(s) 162
SaqAI TTAA 2 cut(s) 39, 207
SatI GCNGC 1 cut(s) 177
Sau3AI GATC 2 cut(s) 157, 251
Sau96I GGNCC 1 cut(s) 200
SetI ASST 3 cut(s) 33, 57, 221
SfaNI GCATC 1 cut(s) 163
SinI GGWCC 1 cut(s) 200
Sse9I AATT 1 cut(s) 273
SsiI CCGC 1 cut(s) 177
TasI AATT 1 cut(s) 273
TauI GCSGC 1 cut(s) 179
TfiI GAWTC 1 cut(s) 77
Tru1I TTAA 2 cut(s) 39, 207
Tru9I TTAA 2 cut(s) 39, 207
TscAI CASTG 1 cut(s) 19
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 276
TspRI CASTG 1 cut(s) 19
VpaK11BI GGWCC 1 cut(s) 200
XmiI GTMKAC 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.