No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr5g0013651 RchiOBHm_Chr7g0197761 |
| rosa_laevigata | RLG00000032036 |
| rosa_roxburghii | Rroxscaffold_1G00062960 Rroxscaffold_2G00125920 |
| rosa_rugosa | Rorug02G0448100 Rorug04G0327200 Rorug05G0011500 |
| rosa_samantha | Rh1CG069900 Rh1DG074500 Rh2DG534400 Rh3AG163500 Rh3AG171800 Rh3BG189000 Rh3BG197200 Rh3BG240300 Rh3CG179000 Rh3CG188200 Rh4DG175900 Rh5CG114300 Rh5DG101000 Rh6DG325400 Rh7AG273400 Rh7CG176000 Rh7CG292500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 111 |
| AciI | CCGC | 1 cut(s) | 111 |
| AclWI | GGATC | 2 cut(s) | 106, 114 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 162, 194 |
| AlwI | GGATC | 2 cut(s) | 106, 114 |
| AoxI | GGCC | 1 cut(s) | 141 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 78 |
| AspS9I | GGNCC | 2 cut(s) | 40, 141 |
| AvaII | GGWCC | 1 cut(s) | 40 |
| BccI | CCATC | 5 cut(s) | 30, 62, 88, 128, 153 |
| Bme18I | GGWCC | 1 cut(s) | 40 |
| BmgT120I | GGNCC | 2 cut(s) | 40, 141 |
| BmiI | GGNNCC | 2 cut(s) | 41, 142 |
| BmsI | GCATC | 1 cut(s) | 116 |
| Bse118I | RCCGGY | 1 cut(s) | 202 |
| BseGI | GGATG | 3 cut(s) | 41, 99, 164 |
| BseMII | CTCAG | 1 cut(s) | 143 |
| Bsh1236I | CGCG | 1 cut(s) | 111 |
| BshFI | GGCC | 1 cut(s) | 143 |
| BsiSI | CCGG | 1 cut(s) | 203 |
| BslFI | GGGAC | 1 cut(s) | 53 |
| BsmFI | GGGAC | 1 cut(s) | 53 |
| BsnI | GGCC | 1 cut(s) | 143 |
| Bsp143I | GATC | 2 cut(s) | 98, 106 |
| BspACI | CCGC | 1 cut(s) | 111 |
| BspANI | GGCC | 1 cut(s) | 143 |
| BspCNI | CTCAG | 1 cut(s) | 144 |
| BspFNI | CGCG | 1 cut(s) | 111 |
| BspLI | GGNNCC | 2 cut(s) | 41, 142 |
| BspPI | GGATC | 2 cut(s) | 106, 114 |
| BsrFI | RCCGGY | 1 cut(s) | 202 |
| BssAI | RCCGGY | 1 cut(s) | 202 |
| BssMI | GATC | 2 cut(s) | 98, 106 |
| Bst6I | CTCTTC | 1 cut(s) | 25 |
| BstC8I | GCNNGC | 1 cut(s) | 204 |
| BstDEI | CTNAG | 1 cut(s) | 152 |
| BstF5I | GGATG | 3 cut(s) | 41, 99, 164 |
| BstFNI | CGCG | 1 cut(s) | 111 |
| BstKTI | GATC | 2 cut(s) | 101, 109 |
| BstMBI | GATC | 2 cut(s) | 98, 106 |
| BstUI | CGCG | 1 cut(s) | 111 |
| BsuRI | GGCC | 1 cut(s) | 143 |
| BtgZI | GCGATG | 1 cut(s) | 139 |
| BtsCI | GGATG | 3 cut(s) | 41, 99, 164 |
| BtsI | GCAGTG | 1 cut(s) | 136 |
| BtsIMutI | CAGTG | 1 cut(s) | 136 |
| Cac8I | GCNNGC | 1 cut(s) | 204 |
| Cfr10I | RCCGGY | 1 cut(s) | 202 |
| Cfr13I | GGNCC | 2 cut(s) | 40, 141 |
| CviAII | CATG | 1 cut(s) | 207 |
| CviJI | RGCY | 2 cut(s) | 7, 143 |
| CviKI_1 | RGCY | 2 cut(s) | 7, 143 |
| DdeI | CTNAG | 1 cut(s) | 152 |
| DpnI | GATC | 2 cut(s) | 100, 108 |
| DpnII | GATC | 2 cut(s) | 98, 106 |
| Eam1104I | CTCTTC | 1 cut(s) | 25 |
| EarI | CTCTTC | 1 cut(s) | 25 |
| Eco47I | GGWCC | 1 cut(s) | 40 |
| EcoO109I | RGGNCCY | 1 cut(s) | 141 |
| FaeI | CATG | 1 cut(s) | 210 |
| FaiI | YATR | 1 cut(s) | 208 |
| FaqI | GGGAC | 1 cut(s) | 53 |
| FatI | CATG | 1 cut(s) | 206 |
| FokI | GGATG | 3 cut(s) | 48, 106, 171 |
| HaeIII | GGCC | 1 cut(s) | 143 |
| HapII | CCGG | 1 cut(s) | 203 |
| Hin1II | CATG | 1 cut(s) | 210 |
| HinfI | GANTC | 2 cut(s) | 79, 171 |
| HpaII | CCGG | 1 cut(s) | 203 |
| Hpy166II | GTNNAC | 1 cut(s) | 12 |
| Hpy188I | TCNGA | 1 cut(s) | 153 |
| Hpy8I | GTNNAC | 1 cut(s) | 12 |
| HpyCH4V | TGCA | 1 cut(s) | 129 |
| HpyF3I | CTNAG | 1 cut(s) | 152 |
| Hsp92II | CATG | 1 cut(s) | 210 |
| KroI | GCCGGC | 1 cut(s) | 202 |
| KroNI | GCCGGC | 1 cut(s) | 204 |
| Kzo9I | GATC | 2 cut(s) | 98, 106 |
| LpnPI | CCDG | 2 cut(s) | 66, 177 |
| LweI | GCATC | 1 cut(s) | 116 |
| MalI | GATC | 2 cut(s) | 100, 108 |
| MboI | GATC | 2 cut(s) | 98, 106 |
| MboII | GAAGA | 2 cut(s) | 42, 70 |
| MmeI | TCCRAC | 2 cut(s) | 84, 148 |
| MnlI | CCTC | 4 cut(s) | 26, 131, 149, 154 |
| MroNI | GCCGGC | 1 cut(s) | 202 |
| MroXI | GAANNNNTTC | 1 cut(s) | 78 |
| MspI | CCGG | 1 cut(s) | 203 |
| MvnI | CGCG | 1 cut(s) | 111 |
| NaeI | GCCGGC | 1 cut(s) | 204 |
| NdeII | GATC | 2 cut(s) | 98, 106 |
| NgoMIV | GCCGGC | 1 cut(s) | 202 |
| NlaIII | CATG | 1 cut(s) | 210 |
| NlaIV | GGNNCC | 2 cut(s) | 41, 142 |
| PdiI | GCCGGC | 1 cut(s) | 204 |
| PdmI | GAANNNNTTC | 1 cut(s) | 78 |
| PfeI | GAWTC | 2 cut(s) | 79, 171 |
| PspN4I | GGNNCC | 2 cut(s) | 41, 142 |
| PspPI | GGNCC | 2 cut(s) | 40, 141 |
| Sau3AI | GATC | 2 cut(s) | 98, 106 |
| Sau96I | GGNCC | 2 cut(s) | 40, 141 |
| SfaNI | GCATC | 1 cut(s) | 116 |
| SgeI | CNNG | 5 cut(s) | 65, 122, 157, 187, 204 |
| SinI | GGWCC | 1 cut(s) | 40 |
| SsiI | CCGC | 1 cut(s) | 111 |
| TfiI | GAWTC | 2 cut(s) | 79, 171 |
| TscAI | CASTG | 1 cut(s) | 136 |
| TspRI | CASTG | 1 cut(s) | 136 |
| VpaK11BI | GGWCC | 1 cut(s) | 40 |
| XmnI | GAANNNNTTC | 1 cut(s) | 78 |