Rh7AG273400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0007555
Physical Location & Seq
Forward (+)
28571149 .. 28571581
433 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG273400.1

Sequence Viewer

Length: 342 bp
ATGACATGCCTATGTAGGGCCCGAAGAAAGGAATTACTAGCCAAGTACATTAGCAACATTTGCAAATTTTGCAAAAGCCGACCTAGCTCTGCTAGGATTTTGAGAGTCGTAGTCCTTAGTGGTGTCTTGGTGTGTTCGAAGTTGGAGCGGGCAAAGTTTGATGGTGGATCTGATGGGGTGGACTGGCTGGGGTCGGTCGACCGTGGTGGTGGCTTGTGGTGCAATGGTGGCAACTATGGAGGGGCGCCACATTTGAGATGTTGGAATTGGGAACTTGCGATCAGATCTCGACTGCTTAGGCCGATTTGGGCTACTAGCAGTGGGGCTGTGGTCTGGGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.46

Weight (kDa)

9.92

Isoelectric Point (pI)

44.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 244
AccBSI CCGCTC 1 cut(s) 148
AccI GTMKAC 1 cut(s) 198
AciI CCGC 1 cut(s) 148
AclWI GGATC 1 cut(s) 175
AcsI RAATTY 1 cut(s) 65
AcyI GRCGYC 1 cut(s) 245
AfaI GTAC 1 cut(s) 47
AfiI CCNNNNNNNGG 2 cut(s) 16, 28
AluBI AGCT 1 cut(s) 87
AluI AGCT 1 cut(s) 87
AlwI GGATC 1 cut(s) 175
AoxI GGCC 2 cut(s) 18, 299
ApaI GGGCCC 1 cut(s) 22
ApoI RAATTY 1 cut(s) 65
AspLEI GCGC 1 cut(s) 247
AspS9I GGNCC 2 cut(s) 18, 19
AsuII TTCGAA 1 cut(s) 137
BaeGI GKGCMC 1 cut(s) 22
BanI GGYRCC 1 cut(s) 244
BanII GRGCYC 1 cut(s) 22
BccI CCATC 2 cut(s) 155, 167
BfaI CTAG 4 cut(s) 38, 84, 93, 315
BfoI RGCGCY 1 cut(s) 248
BglII AGATCT 1 cut(s) 284
BmgT120I GGNCC 2 cut(s) 18, 19
BmiI GGNNCC 2 cut(s) 20, 246
Bpu10I CCTNAGC 1 cut(s) 296
Bpu14I TTCGAA 1 cut(s) 137
BsaHI GRCGYC 1 cut(s) 245
BsaJI CCNNGG 1 cut(s) 202
Bsc4I CCNNNNNNNGG 2 cut(s) 16, 28
Bse1I ACTGG 1 cut(s) 188
Bse3DI GCAATG 1 cut(s) 229
BseDI CCNNGG 1 cut(s) 202
BseLI CCNNNNNNNGG 2 cut(s) 16, 28
BseMI GCAATG 1 cut(s) 229
BseNI ACTGG 1 cut(s) 188
BseSI GKGCMC 1 cut(s) 22
BseYI CCCAGC 1 cut(s) 187
Bsh1285I CGRYCG 2 cut(s) 198, 202
BshFI GGCC 2 cut(s) 20, 301
BshNI GGYRCC 1 cut(s) 244
BsiEI CGRYCG 2 cut(s) 198, 202
BslI CCNNNNNNNGG 2 cut(s) 16, 28
BsnI GGCC 2 cut(s) 20, 301
Bsp119I TTCGAA 1 cut(s) 137
Bsp120I GGGCCC 1 cut(s) 18
Bsp1286I GDGCHC 1 cut(s) 22
Bsp143I GATC 3 cut(s) 167, 279, 284
BspACI CCGC 1 cut(s) 148
BspANI GGCC 2 cut(s) 20, 301
BspLI GGNNCC 2 cut(s) 20, 246
BspPI GGATC 1 cut(s) 175
BspT104I TTCGAA 1 cut(s) 137
BspT107I GGYRCC 1 cut(s) 244
BsrBI CCGCTC 1 cut(s) 148
BsrDI GCAATG 1 cut(s) 229
BsrI ACTGG 1 cut(s) 188
BssECI CCNNGG 1 cut(s) 202
BssMI GATC 3 cut(s) 167, 279, 284
BssNI GRCGYC 1 cut(s) 245
Bst4CI ACNGT 1 cut(s) 203
BstACI GRCGYC 1 cut(s) 245
BstAPI GCANNNNNTGC 2 cut(s) 60, 69
BstBI TTCGAA 1 cut(s) 137
BstC8I GCNNGC 1 cut(s) 150
BstDEI CTNAG 2 cut(s) 116, 296
BstDSI CCRYGG 1 cut(s) 202
BstH2I RGCGCY 1 cut(s) 248
BstHHI GCGC 1 cut(s) 247
BstKTI GATC 3 cut(s) 170, 282, 287
BstMBI GATC 3 cut(s) 167, 279, 284
BstMCI CGRYCG 2 cut(s) 198, 202
BstMWI GCNNNNNNNGC 5 cut(s) 60, 69, 84, 219, 228
BstNSI RCATGY 1 cut(s) 9
BstSLI GKGCMC 1 cut(s) 22
BstX2I RGATCY 2 cut(s) 167, 284
BstYI RGATCY 2 cut(s) 167, 284
BsuRI GGCC 2 cut(s) 20, 301
BtgI CCRYGG 1 cut(s) 202
BtsI GCAGTG 1 cut(s) 325
BtsIMutI CAGTG 1 cut(s) 325
Cac8I GCNNGC 1 cut(s) 150
CfoI GCGC 1 cut(s) 247
Cfr13I GGNCC 2 cut(s) 18, 19
Csp6I GTAC 1 cut(s) 46
CviAII CATG 1 cut(s) 6
CviJI RGCY 9 cut(s) 20, 41, 78, 87, 187, 213, 301, 311, 326
CviKI_1 RGCY 9 cut(s) 20, 41, 78, 87, 187, 213, 301, 311, 326
CviQI GTAC 1 cut(s) 46
DdeI CTNAG 2 cut(s) 116, 296
DinI GGCGCC 1 cut(s) 246
DpnI GATC 3 cut(s) 169, 281, 286
DpnII GATC 3 cut(s) 167, 279, 284
Eco24I GRGCYC 1 cut(s) 22
EcoO109I RGGNCCY 1 cut(s) 18
EcoT38I GRGCYC 1 cut(s) 22
EgeI GGCGCC 1 cut(s) 246
EheI GGCGCC 1 cut(s) 246
FaeI CATG 1 cut(s) 9
FaiI YATR 3 cut(s) 7, 13, 237
FatI CATG 1 cut(s) 5
FauI CCCGC 1 cut(s) 141
FblI GTMKAC 1 cut(s) 198
FriOI GRGCYC 1 cut(s) 22
FspBI CTAG 4 cut(s) 38, 84, 93, 315
GlaI GCGC 1 cut(s) 246
GsaI CCCAGC 1 cut(s) 191
HaeII RGCGCY 1 cut(s) 248
HaeIII GGCC 2 cut(s) 20, 301
HhaI GCGC 1 cut(s) 247
Hin1I GRCGYC 1 cut(s) 245
Hin1II CATG 1 cut(s) 9
Hin6I GCGC 1 cut(s) 245
HinP1I GCGC 1 cut(s) 245
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HinfI GANTC 1 cut(s) 105
Hpy166II GTNNAC 2 cut(s) 181, 199
Hpy188I TCNGA 2 cut(s) 172, 284
Hpy188III TCNNGA 1 cut(s) 288
Hpy8I GTNNAC 2 cut(s) 181, 199
HpyCH4III ACNGT 1 cut(s) 203
HpyCH4V TGCA 3 cut(s) 63, 72, 222
HpyF10VI GCNNNNNNNGC 5 cut(s) 60, 69, 84, 219, 228
HpyF3I CTNAG 2 cut(s) 116, 296
Hsp92I GRCGYC 1 cut(s) 245
Hsp92II CATG 1 cut(s) 9
HspAI GCGC 1 cut(s) 245
KasI GGCGCC 1 cut(s) 244
Kzo9I GATC 3 cut(s) 167, 279, 284
LmnI GCTCC 1 cut(s) 145
LpnPI CCDG 3 cut(s) 169, 173, 319
MaeI CTAG 4 cut(s) 38, 84, 93, 315
MalI GATC 3 cut(s) 169, 281, 286
MbiI CCGCTC 1 cut(s) 148
MboI GATC 3 cut(s) 167, 279, 284
MboII GAAGA 1 cut(s) 36
MflI RGATCY 2 cut(s) 167, 284
MhlI GDGCHC 1 cut(s) 22
MluCI AATT 3 cut(s) 32, 65, 265
Mly113I GGCGCC 1 cut(s) 245
MlyI GAGTC 1 cut(s) 114
MmeI TCCRAC 2 cut(s) 123, 242
MnlI CCTC 1 cut(s) 233
MslI CAYNNNNRTG 1 cut(s) 10
MwoI GCNNNNNNNGC 5 cut(s) 60, 69, 84, 219, 228
NarI GGCGCC 1 cut(s) 245
NdeII GATC 3 cut(s) 167, 279, 284
NlaIII CATG 1 cut(s) 9
NlaIV GGNNCC 2 cut(s) 20, 246
NspI RCATGY 1 cut(s) 9
NspV TTCGAA 1 cut(s) 137
PleI GAGTC 1 cut(s) 113
PluTI GGCGCC 1 cut(s) 248
PpsI GAGTC 1 cut(s) 113
PspFI CCCAGC 1 cut(s) 187
PspN4I GGNNCC 2 cut(s) 20, 246
PspOMI GGGCCC 1 cut(s) 18
PspPI GGNCC 2 cut(s) 18, 19
PsuI RGATCY 2 cut(s) 167, 284
RsaI GTAC 1 cut(s) 47
RsaNI GTAC 1 cut(s) 46
RseI CAYNNNNRTG 1 cut(s) 10
SalI GTCGAC 1 cut(s) 197
Sau3AI GATC 3 cut(s) 167, 279, 284
Sau96I GGNCC 2 cut(s) 18, 19
SchI GAGTC 1 cut(s) 114
SduI GDGCHC 1 cut(s) 22
SetI ASST 2 cut(s) 85, 89
SfoI GGCGCC 1 cut(s) 246
SfuI TTCGAA 1 cut(s) 137
SmiMI CAYNNNNRTG 1 cut(s) 10
Sse9I AATT 3 cut(s) 32, 65, 265
SsiI CCGC 1 cut(s) 148
SspDI GGCGCC 1 cut(s) 244
SspMI CTAG 4 cut(s) 38, 84, 93, 315
TaaI ACNGT 1 cut(s) 203
TaqI TCGA 3 cut(s) 137, 198, 289
TaqII GACCGA 1 cut(s) 184
TasI AATT 3 cut(s) 32, 65, 265
TatI WGTACW 1 cut(s) 45
TscAI CASTG 1 cut(s) 325
TspRI CASTG 1 cut(s) 325
XapI RAATTY 1 cut(s) 65
XceI RCATGY 1 cut(s) 9
XmiI GTMKAC 1 cut(s) 198
XspI CTAG 4 cut(s) 38, 84, 93, 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.