Rroxscaffold_1G00062960

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0007555
Physical Location & Seq
Reverse (-)
84985383 .. 84994570
9188 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00062960.1

Sequence Viewer

Length: 549 bp
ATGTTCGACACCCTTAGCCGGCTTCGATCTTTAGGTGGGAGAGTGCCTTCATTCCGACGCCAAGTTGATTTTTGTCAATTTGTGCATTGGAGTTTGATGGGTAGTCAAACCACCGACTACTCAATTCACTACATGGCTGCAATCCGTAATGTAAAATTAGCTGGCGTTTCGACTTGTGTCTCGAAGTTCCCGGAGAAGAAGTTTGATGGGGAAACGGTTCGTTTGGATTGGATGGGATCGTTGGATCACGGTGGTGGTTCGCGATACGGTGATGGAGGGGCCTCGCTTCGAGAGGTTGGCAACTATATTCTTATGGGGGGATTTGGAGATAATCTCAAATTATATGACTTGCATCAAGCTGATACTCCGATATGGCAAATTGCAAAACTTGATGCATGTGTTACATCTGTTGCATGGATCGACAGCTATAGACTAATGGTTTCTTTTAGTGATAAAGTCATGGGTTTCACATGGGTCCCATTCAGCGTGTTAGCTTCTCTCCAAATGGCAAGTCATATGCAGCAAGATCCCGAGACGAAAGAACGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

182

Amino Acids

20.46

Weight (kDa)

6.95

Isoelectric Point (pI)

37.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 262
AclWI GGATC 4 cut(s) 244, 252, 425, 521
AcyI GRCGYC 1 cut(s) 58
AfiI CCNNNNNNNGG 1 cut(s) 18
AleI CACNNNNGTG 1 cut(s) 252
AluBI AGCT 4 cut(s) 161, 359, 426, 494
AluI AGCT 4 cut(s) 161, 359, 426, 494
Alw26I GTCTC 2 cut(s) 184, 527
AlwI GGATC 4 cut(s) 244, 252, 425, 521
Ama87I CYCGRG 1 cut(s) 530
AoxI GGCC 1 cut(s) 279
ApeKI GCWGC 2 cut(s) 137, 520
ArsI GACNNNNNNTTYG 2 cut(s) 496, 528
Asp700I GAANNNNTTC 1 cut(s) 216
AspS9I GGNCC 2 cut(s) 279, 475
AsuC2I CCSGG 1 cut(s) 191
AsuHPI GGTGA 1 cut(s) 281
AvaI CYCGRG 1 cut(s) 530
AvaII GGWCC 1 cut(s) 475
BbvI GCAGC 2 cut(s) 124, 532
BccI CCATC 4 cut(s) 91, 200, 226, 266
BcnI CCSGG 1 cut(s) 191
BcoDI GTCTC 2 cut(s) 184, 527
BfmI CTRYAG 1 cut(s) 427
BisI GCNGC 2 cut(s) 138, 521
BlsI GCNGC 2 cut(s) 139, 522
Bme1390I CCNGG 1 cut(s) 191
Bme18I GGWCC 1 cut(s) 475
BmeT110I CYCGRG 1 cut(s) 530
BmgT120I GGNCC 2 cut(s) 279, 475
BmiI GGNNCC 3 cut(s) 280, 476, 477
BmrFI CCNGG 1 cut(s) 191
BmsI GCATC 2 cut(s) 361, 382
BoxI GACNNNNGTC 1 cut(s) 176
BplI GAGNNNNNCTC 2 cut(s) 318, 350
Bpu10I CCTNAGC 1 cut(s) 14
BpuMI CCSGG 1 cut(s) 191
BsaHI GRCGYC 1 cut(s) 58
BsaXI ACNNNNNCTCC 2 cut(s) 185, 215
Bsc4I CCNNNNNNNGG 1 cut(s) 18
Bse118I RCCGGY 1 cut(s) 18
BseGI GGATG 1 cut(s) 237
BseLI CCNNNNNNNGG 1 cut(s) 18
BseXI GCAGC 2 cut(s) 124, 532
Bsh1236I CGCG 1 cut(s) 262
BshFI GGCC 1 cut(s) 281
BsiHKCI CYCGRG 1 cut(s) 530
BsiSI CCGG 2 cut(s) 19, 191
BslFI GGGAC 1 cut(s) 461
BslI CCNNNNNNNGG 1 cut(s) 18
BsmAI GTCTC 2 cut(s) 184, 527
BsmBI CGTCTC 1 cut(s) 527
BsmFI GGGAC 1 cut(s) 461
BsnI GGCC 1 cut(s) 281
BsoBI CYCGRG 1 cut(s) 530
Bsp143I GATC 5 cut(s) 26, 236, 244, 417, 526
Bsp68I TCGCGA 1 cut(s) 262
BspANI GGCC 1 cut(s) 281
BspFNI CGCG 1 cut(s) 262
BspLI GGNNCC 3 cut(s) 280, 476, 477
BspPI GGATC 4 cut(s) 244, 252, 425, 521
BsrFI RCCGGY 1 cut(s) 18
BssAI RCCGGY 1 cut(s) 18
BssMI GATC 5 cut(s) 26, 236, 244, 417, 526
BssNI GRCGYC 1 cut(s) 58
Bst4CI ACNGT 3 cut(s) 217, 251, 269
BstACI GRCGYC 1 cut(s) 58
BstC8I GCNNGC 2 cut(s) 20, 163
BstDEI CTNAG 1 cut(s) 14
BstF5I GGATG 1 cut(s) 237
BstFNI CGCG 1 cut(s) 262
BstKTI GATC 5 cut(s) 29, 239, 247, 420, 529
BstMAI GTCTC 2 cut(s) 184, 527
BstMBI GATC 5 cut(s) 26, 236, 244, 417, 526
BstNSI RCATGY 1 cut(s) 399
BstPAI GACNNNNGTC 1 cut(s) 176
BstSCI CCNGG 1 cut(s) 189
BstSFI CTRYAG 1 cut(s) 427
BstUI CGCG 1 cut(s) 262
BstV1I GCAGC 2 cut(s) 124, 532
BstX2I RGATCY 1 cut(s) 526
BstYI RGATCY 1 cut(s) 526
BsuRI GGCC 1 cut(s) 281
BtsCI GGATG 1 cut(s) 237
BtuMI TCGCGA 1 cut(s) 262
Cac8I GCNNGC 2 cut(s) 20, 163
Cfr10I RCCGGY 1 cut(s) 18
Cfr13I GGNCC 2 cut(s) 279, 475
CseI GACGC 1 cut(s) 66
CviAII CATG 5 cut(s) 133, 396, 414, 460, 471
CviJI RGCY 8 cut(s) 18, 22, 137, 161, 281, 359, 426, 494
CviKI_1 RGCY 8 cut(s) 18, 22, 137, 161, 281, 359, 426, 494
DdeI CTNAG 1 cut(s) 14
DpnI GATC 5 cut(s) 28, 238, 246, 419, 528
DpnII GATC 5 cut(s) 26, 236, 244, 417, 526
Eco47I GGWCC 1 cut(s) 475
Eco88I CYCGRG 1 cut(s) 530
EcoO109I RGGNCCY 2 cut(s) 279, 475
EcoT22I ATGCAT 1 cut(s) 397
Esp3I CGTCTC 1 cut(s) 527
FaeI CATG 5 cut(s) 136, 399, 417, 463, 474
FaqI GGGAC 1 cut(s) 461
FatI CATG 5 cut(s) 132, 395, 413, 459, 470
FauNDI CATATG 1 cut(s) 516
Fnu4HI GCNGC 2 cut(s) 138, 521
FokI GGATG 1 cut(s) 244
Fsp4HI GCNGC 2 cut(s) 138, 521
GluI GCNGC 2 cut(s) 138, 521
HaeIII GGCC 1 cut(s) 281
HapII CCGG 2 cut(s) 19, 191
HgaI GACGC 1 cut(s) 66
Hin1I GRCGYC 1 cut(s) 58
Hin1II CATG 5 cut(s) 136, 399, 417, 463, 474
HpaII CCGG 2 cut(s) 19, 191
HphI GGTGA 1 cut(s) 281
Hpy188I TCNGA 2 cut(s) 56, 369
Hpy188III TCNNGA 4 cut(s) 181, 261, 290, 530
Hpy99I CGWCG 1 cut(s) 60
HpyAV CCTTC 1 cut(s) 57
HpyCH4III ACNGT 3 cut(s) 217, 251, 269
HpyCH4V TGCA 7 cut(s) 85, 140, 352, 383, 395, 413, 520
HpyF3I CTNAG 1 cut(s) 14
Hsp92I GRCGYC 1 cut(s) 58
Hsp92II CATG 5 cut(s) 136, 399, 417, 463, 474
KflI GGGWCCC 1 cut(s) 475
KroI GCCGGC 1 cut(s) 18
KroNI GCCGGC 1 cut(s) 20
Kzo9I GATC 5 cut(s) 26, 236, 244, 417, 526
LpnPI CCDG 3 cut(s) 32, 147, 204
Lsp1109I GCAGC 2 cut(s) 124, 532
LweI GCATC 2 cut(s) 361, 382
MaeIII GTNAC 1 cut(s) 400
MalI GATC 5 cut(s) 28, 238, 246, 419, 528
MboI GATC 5 cut(s) 26, 236, 244, 417, 526
MboII GAAGA 1 cut(s) 208
MflI RGATCY 1 cut(s) 526
MluCI AATT 5 cut(s) 77, 123, 155, 338, 378
MmeI TCCRAC 2 cut(s) 79, 222
MnlI CCTC 3 cut(s) 269, 286, 292
Mph1103I ATGCAT 1 cut(s) 397
MroNI GCCGGC 1 cut(s) 18
MroXI GAANNNNTTC 1 cut(s) 216
MslI CAYNNNNRTG 1 cut(s) 252
MspI CCGG 2 cut(s) 19, 191
MspR9I CCNGG 1 cut(s) 191
MvnI CGCG 1 cut(s) 262
NaeI GCCGGC 1 cut(s) 20
NciI CCSGG 1 cut(s) 191
NdeI CATATG 1 cut(s) 516
NdeII GATC 5 cut(s) 26, 236, 244, 417, 526
NgoMIV GCCGGC 1 cut(s) 18
NlaIII CATG 5 cut(s) 136, 399, 417, 463, 474
NlaIV GGNNCC 3 cut(s) 280, 476, 477
NruI TCGCGA 1 cut(s) 262
NsiI ATGCAT 1 cut(s) 397
NspI RCATGY 1 cut(s) 399
OliI CACNNNNGTG 1 cut(s) 252
PdiI GCCGGC 1 cut(s) 20
PdmI GAANNNNTTC 1 cut(s) 216
PfoI TCCNGGA 1 cut(s) 189
PkrI GCNGC 2 cut(s) 139, 522
PpuMI RGGWCCY 1 cut(s) 475
PshAI GACNNNNGTC 1 cut(s) 176
Psp5II RGGWCCY 1 cut(s) 475
PspN4I GGNNCC 3 cut(s) 280, 476, 477
PspPI GGNCC 2 cut(s) 279, 475
PspPPI RGGWCCY 1 cut(s) 475
PsuI RGATCY 1 cut(s) 526
RruI TCGCGA 1 cut(s) 262
RseI CAYNNNNRTG 1 cut(s) 252
SatI GCNGC 2 cut(s) 138, 521
Sau3AI GATC 5 cut(s) 26, 236, 244, 417, 526
Sau96I GGNCC 2 cut(s) 279, 475
ScrFI CCNGG 1 cut(s) 191
SetI ASST 6 cut(s) 37, 163, 297, 361, 428, 496
SfaNI GCATC 2 cut(s) 361, 382
SfcI CTRYAG 1 cut(s) 427
SinI GGWCC 1 cut(s) 475
SmiMI CAYNNNNRTG 1 cut(s) 252
Sse9I AATT 5 cut(s) 77, 123, 155, 338, 378
StyD4I CCNGG 1 cut(s) 189
TaaI ACNGT 3 cut(s) 217, 251, 269
TaqI TCGA 6 cut(s) 6, 25, 170, 182, 289, 420
TasI AATT 5 cut(s) 77, 123, 155, 338, 378
TseI GCWGC 2 cut(s) 137, 520
TspDTI ATGAA 1 cut(s) 39
TspGWI ACGGA 1 cut(s) 134
VpaK11BI GGWCC 1 cut(s) 475
XceI RCATGY 1 cut(s) 399
XmnI GAANNNNTTC 1 cut(s) 216
Zsp2I ATGCAT 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.