Rh7CG176000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0007555
Physical Location & Seq
Forward (+)
15026655 .. 15026933
279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG176000.1

Sequence Viewer

Length: 279 bp
ATGGGATCGTTGGATCACGGTGGTGGTTCGCGATGCAGTGATGGAGGGGCCTCGCTTCTGAGAGGCTGGAGAGTTGGAATCGTGGTTCTGCGTTTTGTTGGTTTGTCGCCGACATGGGCTATGCGCAGTCGTGGCTTTGATGGTGTTGCTGGGTGGTCAGAAGTGGTCGTCAGCGTCGATCTCGTCAACAATGGCTATTGCAGTTTGGCATCCTCCATTGCAGGTCCTCAGGACGCATCCGTCAGTGCTGTTGTCCAGCTCGTTGGTATCAGGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

9.45

Weight (kDa)

7.85

Isoelectric Point (pI)

26.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 239
Acc16I TGCGCA 1 cut(s) 125
Acc36I ACCTGC 1 cut(s) 212
AccII CGCG 1 cut(s) 31
AclWI GGATC 2 cut(s) 13, 21
AleI CACNNNNGTG 1 cut(s) 21
AloI GAACNNNNNNTCC 2 cut(s) 69, 101
AluBI AGCT 1 cut(s) 259
AluI AGCT 1 cut(s) 259
AlwI GGATC 2 cut(s) 13, 21
AoxI GGCC 1 cut(s) 48
AspLEI GCGC 1 cut(s) 126
AspS9I GGNCC 2 cut(s) 48, 224
AvaII GGWCC 1 cut(s) 224
AxyI CCTNAGG 1 cut(s) 228
BccI CCATC 2 cut(s) 35, 134
BfaI CTAG 1 cut(s) 277
BfuAI ACCTGC 1 cut(s) 212
Bme18I GGWCC 1 cut(s) 224
BmgT120I GGNCC 2 cut(s) 48, 224
BmiI GGNNCC 1 cut(s) 49
BmsI GCATC 3 cut(s) 23, 218, 245
BpmI CTGGAG 1 cut(s) 88
Bse21I CCTNAGG 1 cut(s) 228
Bse3DI GCAATG 1 cut(s) 216
BseGI GGATG 2 cut(s) 209, 236
BseMI GCAATG 1 cut(s) 216
BseMII CTCAG 2 cut(s) 50, 242
BseYI CCCAGC 1 cut(s) 149
Bsh1236I CGCG 1 cut(s) 31
BshFI GGCC 1 cut(s) 50
BsnI GGCC 1 cut(s) 50
Bsp143I GATC 4 cut(s) 5, 13, 178, 273
Bsp68I TCGCGA 1 cut(s) 31
BspANI GGCC 1 cut(s) 50
BspCNI CTCAG 2 cut(s) 51, 241
BspFNI CGCG 1 cut(s) 31
BspLI GGNNCC 1 cut(s) 49
BspMI ACCTGC 1 cut(s) 212
BspPI GGATC 2 cut(s) 13, 21
BsrDI GCAATG 1 cut(s) 216
BssMI GATC 4 cut(s) 5, 13, 178, 273
Bst4CI ACNGT 1 cut(s) 20
BstDEI CTNAG 2 cut(s) 59, 228
BstF5I GGATG 2 cut(s) 209, 236
BstFNI CGCG 1 cut(s) 31
BstHHI GCGC 1 cut(s) 126
BstKTI GATC 4 cut(s) 8, 16, 181, 276
BstMBI GATC 4 cut(s) 5, 13, 178, 273
BstMWI GCNNNNNNNGC 1 cut(s) 132
BstUI CGCG 1 cut(s) 31
BstX2I RGATCY 1 cut(s) 273
BstXI CCANNNNNNTGG 1 cut(s) 263
BstYI RGATCY 1 cut(s) 273
Bsu36I CCTNAGG 1 cut(s) 228
BsuRI GGCC 1 cut(s) 50
BtgZI GCGATG 1 cut(s) 46
BtsCI GGATG 2 cut(s) 209, 236
BtsI GCAGTG 1 cut(s) 43
BtsIMutI CAGTG 2 cut(s) 43, 250
BtuMI TCGCGA 1 cut(s) 31
BveI ACCTGC 1 cut(s) 212
CfoI GCGC 1 cut(s) 126
Cfr13I GGNCC 2 cut(s) 48, 224
CseI GACGC 2 cut(s) 163, 242
CviAII CATG 1 cut(s) 114
CviJI RGCY 6 cut(s) 50, 66, 119, 135, 195, 259
CviKI_1 RGCY 6 cut(s) 50, 66, 119, 135, 195, 259
DdeI CTNAG 2 cut(s) 59, 228
DpnI GATC 4 cut(s) 7, 15, 180, 275
DpnII GATC 4 cut(s) 5, 13, 178, 273
DrdI GACNNNNNNGTC 1 cut(s) 239
DseDI GACNNNNNNGTC 1 cut(s) 239
Eco47I GGWCC 1 cut(s) 224
Eco81I CCTNAGG 1 cut(s) 228
EcoO109I RGGNCCY 2 cut(s) 48, 224
FaeI CATG 1 cut(s) 117
FaiI YATR 2 cut(s) 115, 122
FatI CATG 1 cut(s) 113
FokI GGATG 2 cut(s) 196, 223
FspBI CTAG 1 cut(s) 277
FspI TGCGCA 1 cut(s) 125
GlaI GCGC 1 cut(s) 125
GsaI CCCAGC 1 cut(s) 153
GsuI CTGGAG 1 cut(s) 88
HaeIII GGCC 1 cut(s) 50
HgaI GACGC 2 cut(s) 163, 242
HhaI GCGC 1 cut(s) 126
Hin1II CATG 1 cut(s) 117
Hin6I GCGC 1 cut(s) 124
HinP1I GCGC 1 cut(s) 124
HincII GTYRAC 1 cut(s) 187
HindII GTYRAC 1 cut(s) 187
HinfI GANTC 1 cut(s) 78
Hpy166II GTNNAC 1 cut(s) 187
Hpy188I TCNGA 2 cut(s) 60, 160
Hpy188III TCNNGA 3 cut(s) 30, 230, 271
Hpy8I GTNNAC 1 cut(s) 187
Hpy99I CGWCG 1 cut(s) 179
HpyCH4III ACNGT 1 cut(s) 20
HpyCH4V TGCA 3 cut(s) 36, 201, 221
HpyF10VI GCNNNNNNNGC 1 cut(s) 132
HpyF3I CTNAG 2 cut(s) 59, 228
Hsp92II CATG 1 cut(s) 117
HspAI GCGC 1 cut(s) 124
Kzo9I GATC 4 cut(s) 5, 13, 178, 273
LpnPI CCDG 6 cut(s) 52, 135, 207, 215, 256, 269
LweI GCATC 3 cut(s) 23, 218, 245
MaeI CTAG 1 cut(s) 277
MalI GATC 4 cut(s) 7, 15, 180, 275
MboI GATC 4 cut(s) 5, 13, 178, 273
MflI RGATCY 1 cut(s) 273
MmeI TCCRAC 1 cut(s) 55
MnlI CCTC 5 cut(s) 38, 56, 61, 223, 237
MslI CAYNNNNRTG 1 cut(s) 21
MvnI CGCG 1 cut(s) 31
MwoI GCNNNNNNNGC 1 cut(s) 132
NdeII GATC 4 cut(s) 5, 13, 178, 273
NlaIII CATG 1 cut(s) 117
NlaIV GGNNCC 1 cut(s) 49
NruI TCGCGA 1 cut(s) 31
NsbI TGCGCA 1 cut(s) 125
OliI CACNNNNGTG 1 cut(s) 21
PcsI WCGNNNNNNNCGW 1 cut(s) 174
PfeI GAWTC 1 cut(s) 78
PpuMI RGGWCCY 1 cut(s) 224
Psp5II RGGWCCY 1 cut(s) 224
PspFI CCCAGC 1 cut(s) 149
PspN4I GGNNCC 1 cut(s) 49
PspPI GGNCC 2 cut(s) 48, 224
PspPPI RGGWCCY 1 cut(s) 224
PsuI RGATCY 1 cut(s) 273
RruI TCGCGA 1 cut(s) 31
RseI CAYNNNNRTG 1 cut(s) 21
Sau3AI GATC 4 cut(s) 5, 13, 178, 273
Sau96I GGNCC 2 cut(s) 48, 224
SetI ASST 2 cut(s) 226, 261
SfaNI GCATC 3 cut(s) 23, 218, 245
SinI GGWCC 1 cut(s) 224
SmiMI CAYNNNNRTG 1 cut(s) 21
SspMI CTAG 1 cut(s) 277
TaaI ACNGT 1 cut(s) 20
TaqI TCGA 1 cut(s) 177
TfiI GAWTC 1 cut(s) 78
TscAI CASTG 2 cut(s) 43, 250
TspGWI ACGGA 1 cut(s) 229
TspRI CASTG 2 cut(s) 43, 250
VpaK11BI GGWCC 1 cut(s) 224
XspI CTAG 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.