Rh1DG074500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0007555
Physical Location & Seq
Reverse (-)
13748083 .. 13749086
1004 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG074500.1

Sequence Viewer

Length: 606 bp
ATGGACAAAATTGCAGGCCTAGTCCTGCTGTCTTTCTTTTGCGTCTCTTTTGCTGGTTGTGTCTCAGATTTCCCAGAGAAGAAGTTTGATGGGGGAACGGTTCTTTTGGATTGGATGGGATCGTTGGATCACGGTGGTGGTTCGCGATGCAGTGATGGAGGGGCCTCGCTTCTGAGAGGCTGGAGAGTTGGAATCGGGGTTCTGCGTTTTGTTGGTTTGTCGCCGGCATGGGCTATGCGAAGTCGTGGCTTTGATGGTGTTGCTCGGCAGTCAGAAGTGGTTGTCGGCGTCGATCTTGTCAGTGATGGCTATTGTAGTTTGGCATTCTCCATTTCAGGTCCTCATGACGTATTTGTCGGTGCTGCTGTCCAGCATGTTGGCATCAGGATCTGGATCTGGGATCCTGGTGGGCTTGGCAGATGGAGCCAGATCTGGGATCCGGGTGAAGTTTGGTTTTGGCCTGAGGCCCACAATCTTTGTTGGGCTTTTTATGATTTGCTAGAATATATGGATTGGGGCTCCTGTGCCTTATTGGTATTGGATCCAAGACCCAATTCTATGGTATTTGTATGTGAAAGATCGTCTGCCAACATGGCCATATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

22.01

Weight (kDa)

4.92

Isoelectric Point (pI)

37.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 353
AccII CGCG 1 cut(s) 145
AcoI YGGCCR 1 cut(s) 594
AcyI GRCGYC 1 cut(s) 288
AfiI CCNNNNNNNGG 1 cut(s) 433
AjnI CCWGG 1 cut(s) 403
AjuI GAANNNNNNNTTGG 2 cut(s) 538, 570
AleI CACNNNNGTG 1 cut(s) 135
AloI GAACNNNNNNTCC 2 cut(s) 183, 215
Alw26I GTCTC 2 cut(s) 49, 67
AlwNI CAGNNNCTG 1 cut(s) 390
AoxI GGCC 5 cut(s) 16, 162, 458, 465, 594
ApeKI GCWGC 1 cut(s) 362
AspS9I GGNCC 3 cut(s) 162, 338, 466
AsuC2I CCSGG 1 cut(s) 441
AsuHPI GGTGA 1 cut(s) 455
AvaII GGWCC 1 cut(s) 338
AxyI CCTNAGG 1 cut(s) 462
BalI TGGCCA 1 cut(s) 596
BamHI GGATCC 3 cut(s) 400, 436, 541
BanII GRGCYC 1 cut(s) 521
BbvI GCAGC 1 cut(s) 349
BccI CCATC 6 cut(s) 83, 109, 149, 248, 299, 414
BciT130I CCWGG 1 cut(s) 405
BcnI CCSGG 1 cut(s) 441
BcoDI GTCTC 2 cut(s) 49, 67
BfaI CTAG 2 cut(s) 20, 500
BglI GCCNNNNNGGC 1 cut(s) 593
BglII AGATCT 1 cut(s) 429
BisI GCNGC 1 cut(s) 363
BlsI GCNGC 1 cut(s) 364
Bme1390I CCNGG 2 cut(s) 405, 441
Bme18I GGWCC 1 cut(s) 338
BmgT120I GGNCC 3 cut(s) 162, 338, 466
BmiI GGNNCC 6 cut(s) 163, 402, 425, 438, 520, 543
BmrFI CCNGG 2 cut(s) 405, 441
BmsI GCATC 2 cut(s) 137, 390
BpmI CTGGAG 1 cut(s) 202
BpuMI CCSGG 1 cut(s) 441
BsaBI GATNNNNATC 1 cut(s) 392
BsaHI GRCGYC 1 cut(s) 288
Bsc4I CCNNNNNNNGG 1 cut(s) 433
Bse118I RCCGGY 1 cut(s) 223
Bse21I CCTNAGG 1 cut(s) 462
Bse8I GATNNNNATC 1 cut(s) 392
BseBI CCWGG 1 cut(s) 405
BseGI GGATG 1 cut(s) 120
BseJI GATNNNNATC 1 cut(s) 392
BseLI CCNNNNNNNGG 1 cut(s) 433
BseMII CTCAG 3 cut(s) 78, 164, 453
BseXI GCAGC 1 cut(s) 349
Bsh1236I CGCG 1 cut(s) 145
BshFI GGCC 5 cut(s) 18, 164, 460, 467, 596
BsiSI CCGG 2 cut(s) 224, 440
BslI CCNNNNNNNGG 1 cut(s) 433
BsmAI GTCTC 2 cut(s) 49, 67
BsmBI CGTCTC 1 cut(s) 49
BsmI GAATGC 1 cut(s) 323
BsnI GGCC 5 cut(s) 18, 164, 460, 467, 596
Bsp1286I GDGCHC 1 cut(s) 521
Bsp68I TCGCGA 1 cut(s) 145
BspANI GGCC 5 cut(s) 18, 164, 460, 467, 596
BspCNI CTCAG 3 cut(s) 77, 165, 454
BspFNI CGCG 1 cut(s) 145
BspHI TCATGA 1 cut(s) 343
BspLI GGNNCC 6 cut(s) 163, 402, 425, 438, 520, 543
BsrFI RCCGGY 1 cut(s) 223
BssAI RCCGGY 1 cut(s) 223
BssNI GRCGYC 1 cut(s) 288
Bst2UI CCWGG 1 cut(s) 405
Bst4CI ACNGT 2 cut(s) 100, 134
BstACI GRCGYC 1 cut(s) 288
BstC8I GCNNGC 2 cut(s) 16, 225
BstDEI CTNAG 3 cut(s) 64, 173, 462
BstF5I GGATG 1 cut(s) 120
BstFNI CGCG 1 cut(s) 145
BstMAI GTCTC 2 cut(s) 49, 67
BstMWI GCNNNNNNNGC 2 cut(s) 423, 593
BstNI CCWGG 1 cut(s) 405
BstNSI RCATGY 1 cut(s) 377
BstSCI CCNGG 2 cut(s) 403, 439
BstUI CGCG 1 cut(s) 145
BstV1I GCAGC 1 cut(s) 349
BstX2I RGATCY 6 cut(s) 387, 393, 400, 429, 436, 541
BstXI CCANNNNNNTGG 2 cut(s) 377, 559
BstYI RGATCY 6 cut(s) 387, 393, 400, 429, 436, 541
Bsu36I CCTNAGG 1 cut(s) 462
BsuRI GGCC 5 cut(s) 18, 164, 460, 467, 596
BtgZI GCGATG 1 cut(s) 160
BtsCI GGATG 1 cut(s) 120
BtsI GCAGTG 1 cut(s) 157
BtsIMutI CAGTG 2 cut(s) 157, 307
BtuMI TCGCGA 1 cut(s) 145
Cac8I GCNNGC 2 cut(s) 16, 225
CaiI CAGNNNCTG 1 cut(s) 390
CciI TCATGA 1 cut(s) 343
Cfr10I RCCGGY 1 cut(s) 223
Cfr13I GGNCC 3 cut(s) 162, 338, 466
CseI GACGC 2 cut(s) 31, 277
CspCI CAANNNNNGTGG 2 cut(s) 458, 493
CviAII CATG 4 cut(s) 228, 344, 374, 592
DdeI CTNAG 3 cut(s) 64, 173, 462
DrdI GACNNNNNNGTC 1 cut(s) 353
DseDI GACNNNNNNGTC 1 cut(s) 353
EaeI YGGCCR 1 cut(s) 594
Eco147I AGGCCT 1 cut(s) 18
Eco24I GRGCYC 1 cut(s) 521
Eco47I GGWCC 1 cut(s) 338
Eco81I CCTNAGG 1 cut(s) 462
EcoO109I RGGNCCY 2 cut(s) 162, 338
EcoRII CCWGG 1 cut(s) 403
EcoT38I GRGCYC 1 cut(s) 521
Esp3I CGTCTC 1 cut(s) 49
FaeI CATG 4 cut(s) 231, 347, 377, 595
FatI CATG 4 cut(s) 227, 343, 373, 591
Fnu4HI GCNGC 1 cut(s) 363
FokI GGATG 1 cut(s) 127
FriOI GRGCYC 1 cut(s) 521
Fsp4HI GCNGC 1 cut(s) 363
FspBI CTAG 2 cut(s) 20, 500
GluI GCNGC 1 cut(s) 363
GsuI CTGGAG 1 cut(s) 202
HaeIII GGCC 5 cut(s) 18, 164, 460, 467, 596
HapII CCGG 2 cut(s) 224, 440
HgaI GACGC 2 cut(s) 31, 277
Hin1I GRCGYC 1 cut(s) 288
Hin1II CATG 4 cut(s) 231, 347, 377, 595
HinfI GANTC 1 cut(s) 192
HpaII CCGG 2 cut(s) 224, 440
HphI GGTGA 1 cut(s) 455
Hpy188I TCNGA 4 cut(s) 67, 174, 274, 605
Hpy188III TCNNGA 4 cut(s) 144, 344, 385, 391
Hpy99I CGWCG 1 cut(s) 293
HpyCH4III ACNGT 2 cut(s) 100, 134
HpyCH4IV ACGT 1 cut(s) 348
HpyCH4V TGCA 2 cut(s) 14, 150
HpyF10VI GCNNNNNNNGC 2 cut(s) 423, 593
HpyF3I CTNAG 3 cut(s) 64, 173, 462
HpySE526I ACGT 1 cut(s) 348
Hsp92I GRCGYC 1 cut(s) 288
Hsp92II CATG 4 cut(s) 231, 347, 377, 595
KroI GCCGGC 1 cut(s) 223
KroNI GCCGGC 1 cut(s) 225
LmnI GCTCC 2 cut(s) 423, 524
Lsp1109I GCAGC 1 cut(s) 349
LweI GCATC 2 cut(s) 137, 390
MaeI CTAG 2 cut(s) 20, 500
MaeII ACGT 1 cut(s) 348
MboII GAAGA 1 cut(s) 91
MflI RGATCY 6 cut(s) 387, 393, 400, 429, 436, 541
MhlI GDGCHC 1 cut(s) 521
MlsI TGGCCA 1 cut(s) 596
MluCI AATT 2 cut(s) 9, 553
MluNI TGGCCA 1 cut(s) 596
MmeI TCCRAC 2 cut(s) 105, 169
MnlI CCTC 5 cut(s) 152, 170, 175, 351, 457
Mox20I TGGCCA 1 cut(s) 596
MroNI GCCGGC 1 cut(s) 223
MscI TGGCCA 1 cut(s) 596
MslI CAYNNNNRTG 1 cut(s) 135
Msp20I TGGCCA 1 cut(s) 596
MspI CCGG 2 cut(s) 224, 440
MspR9I CCNGG 2 cut(s) 405, 441
Mva1269I GAATGC 1 cut(s) 323
MvaI CCWGG 1 cut(s) 405
MvnI CGCG 1 cut(s) 145
MwoI GCNNNNNNNGC 2 cut(s) 423, 593
NaeI GCCGGC 1 cut(s) 225
NciI CCSGG 1 cut(s) 441
NgoMIV GCCGGC 1 cut(s) 223
NlaIII CATG 4 cut(s) 231, 347, 377, 595
NlaIV GGNNCC 6 cut(s) 163, 402, 425, 438, 520, 543
NmeAIII GCCGAG 1 cut(s) 244
NruI TCGCGA 1 cut(s) 145
NspI RCATGY 1 cut(s) 377
OliI CACNNNNGTG 1 cut(s) 135
PagI TCATGA 1 cut(s) 343
PceI AGGCCT 1 cut(s) 18
PctI GAATGC 1 cut(s) 323
PdiI GCCGGC 1 cut(s) 225
PfeI GAWTC 1 cut(s) 192
PkrI GCNGC 1 cut(s) 364
PpuMI RGGWCCY 1 cut(s) 338
Psp5II RGGWCCY 1 cut(s) 338
Psp6I CCWGG 1 cut(s) 403
PspGI CCWGG 1 cut(s) 403
PspN4I GGNNCC 6 cut(s) 163, 402, 425, 438, 520, 543
PspPI GGNCC 3 cut(s) 162, 338, 466
PspPPI RGGWCCY 1 cut(s) 338
PstNI CAGNNNCTG 1 cut(s) 390
PsuI RGATCY 6 cut(s) 387, 393, 400, 429, 436, 541
RruI TCGCGA 1 cut(s) 145
RseI CAYNNNNRTG 1 cut(s) 135
SatI GCNGC 1 cut(s) 363
Sau96I GGNCC 3 cut(s) 162, 338, 466
ScrFI CCNGG 2 cut(s) 405, 441
SduI GDGCHC 1 cut(s) 521
SetI ASST 2 cut(s) 340, 351
SfaNI GCATC 2 cut(s) 137, 390
SinI GGWCC 1 cut(s) 338
SmiMI CAYNNNNRTG 1 cut(s) 135
Sse9I AATT 2 cut(s) 9, 553
SseBI AGGCCT 1 cut(s) 18
SspMI CTAG 2 cut(s) 20, 500
StuI AGGCCT 1 cut(s) 18
StyD4I CCNGG 2 cut(s) 403, 439
TaaI ACNGT 2 cut(s) 100, 134
TaiI ACGT 1 cut(s) 351
TaqI TCGA 1 cut(s) 291
TasI AATT 2 cut(s) 9, 553
TfiI GAWTC 1 cut(s) 192
TscAI CASTG 2 cut(s) 157, 307
TseI GCWGC 1 cut(s) 362
TspRI CASTG 2 cut(s) 157, 307
VpaK11BI GGWCC 1 cut(s) 338
XceI RCATGY 1 cut(s) 377
XspI CTAG 2 cut(s) 20, 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.