RLG00000005131

Belongs to the nucleosome assembly protein (NAP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0004252
Physical Location & Seq
Forward (+)
65272361 .. 65276732
4372 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005131

Sequence Viewer

Length: 1305 bp
ATGACTGCACAAGCGGCTGAGGTCTGGTGTACATGTGCGGCTGCGATCCGAGCTACAAGGGTGGTGAACGGCCTTGCAGCGTTGCAGTTAAGATATGGTCCTAGTGGCTTTGTCCTAGCAGCACTGATGGCTCTATCATGGCGGAGGAAGATCGAGATCCGACAGGAGGGTGGTGCAACGGGCGTGGCGATGGTTTTAAGGCAAATTACAGGCGACATGGAGGCTGCACATGCGCTTAGGCTGGAGGTCTTGATGGCAAGAGTGGATGGGGGCCGGTTCGGGCAGGCAGAGGGAATGACAACAGAGGACGGTAAGAGGAAAACCGTTTCCTTCGACGTTCCCGACTCCTCCCCTCCGTCCGGCCAACGCCCCAATAAAGTCCCCCGGCGTCCTCTTCCCGTCCCCACCGATGATCATTTGTTCGACAACGAGTTCGACTACACTACTGATCACAAGTACCGTATTCCCGCCTGGATCTGGGATGACGGTCCTCGAGGTAAAAAAGATGCCCCTCATCGAATATCTTTCTTGAACCGTAGGACACGTGAAATCGATCTGAAGCGCTTACAAGTGAAATTTCTTAAAGAGGAAAAGATATTTCAAGATAAGAAACAGAAATGGGTAGAAGAATACTTGAATCAGCCTGGCTGCGACCAGCACAATACGAGAAGGAACACTTTGAGCCCTTCTACAGAGAGATATGAGCTTGTTACTGGAGGAGGATATGAAAAACCATTTACAGAGGGGGAACTGGATATATTTTGGGTTTATGCGTTGCTGGCAAGTCAGATAGTTGTTAGGCAGATTGAATCACCAGACCATGATTATCGGGCTCTCTGTCATCTCATTGATATCCGGTGTCACAGGATAAAAGATCCGAGAGGATTCAAGCTCGATTTTCTCTTTGCTCCTGATAATCCTTTTTTTAAAAATCAAATCCTTACTAAAACATATGAGGTGATTGGTGACAACTCGTCTGTGGTGTTGAAAGCAATCGGGACGGAAATTGAATGGTATGATCAGAAAAGCTTGACAGAGAAACTTCTTTTAGTAAGGTTGCACAAAGGTTCCTTCTTCAACTTCTTTGAAACAAAAATTTATGAACAGAGTTTTATCTTTGATGAAGAAGCTGGTGAACTCAAAGGGCGGCTACCGATGGATTATGTAATTGGCCTTGCTATTCGAAACCAAATCATTCCTCATGCAGCATTGTGGTACAAACGGGAAGAGGAGGATTGTGTGCAAGATGATGAGACAATGGATGATTGTAGACCGGAGGAGCATGCTGTCATTTTGTCATGGTAA

Protein Analysis

435

Amino Acids

49.98

Weight (kDa)

6.06

Isoelectric Point (pI)

48.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAP PF00956 190 - 407 1e-30 Nucleosome assembly protein (NAP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 492
AccI GTMKAC 1 cut(s) 1270
AciI CCGC 5 cut(s) 14, 38, 142, 468, 1147
AclWI GGATC 4 cut(s) 40, 151, 482, 869
AcoI YGGCCR 1 cut(s) 361
AcsI RAATTY 2 cut(s) 575, 1095
AcuI CTGAAG 1 cut(s) 578
AcvI CACGTG 1 cut(s) 545
AcyI GRCGYC 1 cut(s) 388
AfaI GTAC 3 cut(s) 31, 458, 1217
AfeI AGCGCT 1 cut(s) 563
AfiI CCNNNNNNNGG 3 cut(s) 166, 359, 477
AflIII ACRYGT 2 cut(s) 32, 542
AgsI TTSAA 9 cut(s) 532, 602, 637, 809, 889, 988, 1010, 1078, 1088
AhdI GACNNNNNGTC 1 cut(s) 973
AjnI CCWGG 2 cut(s) 470, 643
AluBI AGCT 5 cut(s) 53, 706, 892, 1029, 1130
AluI AGCT 5 cut(s) 53, 706, 892, 1029, 1130
Alw26I GTCTC 1 cut(s) 1247
AlwI GGATC 4 cut(s) 40, 151, 482, 869
Ama87I CYCGRG 1 cut(s) 492
Aor51HI AGCGCT 1 cut(s) 563
AoxI GGCC 4 cut(s) 70, 271, 361, 1171
ApeKI GCWGC 6 cut(s) 41, 77, 119, 224, 648, 1205
ApoI RAATTY 2 cut(s) 575, 1095
ArsI GACNNNNNNTTYG 2 cut(s) 416, 448
AspLEI GCGC 2 cut(s) 235, 564
AspS9I GGNCC 3 cut(s) 98, 271, 488
AsuC2I CCSGG 1 cut(s) 385
AsuHPI GGTGA 5 cut(s) 76, 804, 970, 977, 1145
AsuII TTCGAA 1 cut(s) 1183
AvaI CYCGRG 1 cut(s) 492
AvaII GGWCC 2 cut(s) 98, 488
BanII GRGCYC 2 cut(s) 686, 835
BbrPI CACGTG 1 cut(s) 545
BbvCI CCTCAGC 1 cut(s) 18
BbvI GCAGC 6 cut(s) 28, 89, 131, 211, 635, 1217
BccI CCATC 5 cut(s) 121, 184, 247, 260, 1150
BceAI ACGGC 1 cut(s) 85
BciT130I CCWGG 2 cut(s) 472, 645
BclI TGATCA 3 cut(s) 412, 448, 1018
BcnI CCSGG 1 cut(s) 385
BcoDI GTCTC 1 cut(s) 1247
BfaI CTAG 2 cut(s) 102, 116
BfmI CTRYAG 1 cut(s) 690
BfoI RGCGCY 1 cut(s) 565
BisI GCNGC 9 cut(s) 15, 39, 42, 78, 120, 225, 649, 1148, 1206
BlsI GCNGC 9 cut(s) 16, 40, 43, 79, 121, 226, 650, 1149, 1207
Bme1390I CCNGG 3 cut(s) 385, 472, 645
Bme18I GGWCC 2 cut(s) 98, 488
BmeRI GACNNNNNGTC 1 cut(s) 973
BmeT110I CYCGRG 1 cut(s) 492
BmgT120I GGNCC 3 cut(s) 98, 271, 488
BmiI GGNNCC 2 cut(s) 272, 1069
BmrFI CCNGG 3 cut(s) 385, 472, 645
BmsI GCATC 1 cut(s) 496
BpmI CTGGAG 2 cut(s) 263, 735
Bpu10I CCTNAGC 2 cut(s) 18, 236
Bpu14I TTCGAA 1 cut(s) 1183
BpuMI CCSGG 1 cut(s) 385
Bsa29I ATCGAT 1 cut(s) 552
BsaAI YACGTR 1 cut(s) 545
BsaBI GATNNNNATC 1 cut(s) 155
BsaHI GRCGYC 1 cut(s) 388
BsaJI CCNNGG 1 cut(s) 383
BsaWI WCCGGW 2 cut(s) 855, 1273
Bsc4I CCNNNNNNNGG 3 cut(s) 166, 359, 477
Bse118I RCCGGY 1 cut(s) 273
Bse1I ACTGG 2 cut(s) 718, 756
Bse8I GATNNNNATC 1 cut(s) 155
BseBI CCWGG 2 cut(s) 472, 645
BseCI ATCGAT 1 cut(s) 552
BseDI CCNNGG 1 cut(s) 383
BseGI GGATG 3 cut(s) 271, 487, 1267
BseJI GATNNNNATC 1 cut(s) 155
BseLI CCNNNNNNNGG 3 cut(s) 166, 359, 477
BseMII CTCAG 1 cut(s) 9
BseNI ACTGG 2 cut(s) 718, 756
BseRI GAGGAG 4 cut(s) 337, 732, 1244, 1292
BseXI GCAGC 6 cut(s) 28, 89, 131, 211, 635, 1217
BsgI GTGCAG 1 cut(s) 210
BshFI GGCC 4 cut(s) 72, 273, 363, 1173
BshVI ATCGAT 1 cut(s) 552
BsiHKCI CYCGRG 1 cut(s) 492
BsiSI CCGG 5 cut(s) 274, 360, 385, 856, 1274
BslFI GGGAC 3 cut(s) 365, 386, 1012
BslI CCNNNNNNNGG 3 cut(s) 166, 359, 477
BsmAI GTCTC 1 cut(s) 1247
BsmFI GGGAC 3 cut(s) 365, 386, 1012
BsnI GGCC 4 cut(s) 72, 273, 363, 1173
BsoBI CYCGRG 1 cut(s) 492
Bsp119I TTCGAA 1 cut(s) 1183
Bsp1286I GDGCHC 2 cut(s) 686, 835
Bsp1407I TGTACA 1 cut(s) 29
Bsp143I GATC 9 cut(s) 45, 150, 156, 412, 448, 474, 553, 874, 1018
BspACI CCGC 5 cut(s) 14, 38, 142, 468, 1147
BspANI GGCC 4 cut(s) 72, 273, 363, 1173
BspCNI CTCAG 1 cut(s) 10
BspDI ATCGAT 1 cut(s) 552
BspLI GGNNCC 2 cut(s) 272, 1069
BspPI GGATC 4 cut(s) 40, 151, 482, 869
BspT104I TTCGAA 1 cut(s) 1183
BsrFI RCCGGY 1 cut(s) 273
BsrGI TGTACA 1 cut(s) 29
BsrI ACTGG 2 cut(s) 718, 756
BssAI RCCGGY 1 cut(s) 273
BssECI CCNNGG 1 cut(s) 383
BssMI GATC 9 cut(s) 45, 150, 156, 412, 448, 474, 553, 874, 1018
BssNI GRCGYC 1 cut(s) 388
Bst2UI CCWGG 2 cut(s) 472, 645
Bst4CI ACNGT 5 cut(s) 311, 325, 461, 488, 536
Bst6I CTCTTC 2 cut(s) 399, 1221
BstACI GRCGYC 1 cut(s) 388
BstAUI TGTACA 1 cut(s) 29
BstBAI YACGTR 1 cut(s) 545
BstBI TTCGAA 1 cut(s) 1183
BstC8I GCNNGC 3 cut(s) 285, 780, 1284
BstDEI CTNAG 2 cut(s) 18, 236
BstF5I GGATG 3 cut(s) 271, 487, 1267
BstH2I RGCGCY 1 cut(s) 565
BstHHI GCGC 2 cut(s) 235, 564
BstKTI GATC 9 cut(s) 48, 153, 159, 415, 451, 477, 556, 877, 1021
BstMAI GTCTC 1 cut(s) 1247
BstMBI GATC 9 cut(s) 45, 150, 156, 412, 448, 474, 553, 874, 1018
BstMWI GCNNNNNNNGC 5 cut(s) 14, 50, 128, 230, 779
BstNI CCWGG 2 cut(s) 472, 645
BstNSI RCATGY 3 cut(s) 36, 233, 1286
BstSCI CCNGG 3 cut(s) 383, 470, 643
BstSFI CTRYAG 1 cut(s) 690
BstV1I GCAGC 6 cut(s) 28, 89, 131, 211, 635, 1217
BstX2I RGATCY 3 cut(s) 156, 474, 874
BstYI RGATCY 3 cut(s) 156, 474, 874
Bsu15I ATCGAT 1 cut(s) 552
BsuRI GGCC 4 cut(s) 72, 273, 363, 1173
BsuTUI ATCGAT 1 cut(s) 552
BtgZI GCGATG 1 cut(s) 203
BtsCI GGATG 3 cut(s) 271, 487, 1267
BtsIMutI CAGTG 1 cut(s) 122
Cac8I GCNNGC 3 cut(s) 285, 780, 1284
CfoI GCGC 2 cut(s) 235, 564
Cfr10I RCCGGY 1 cut(s) 273
Cfr13I GGNCC 3 cut(s) 98, 271, 488
ClaI ATCGAT 1 cut(s) 552
CseI GACGC 1 cut(s) 377
Csp6I GTAC 3 cut(s) 30, 457, 1216
CspCI CAANNNNNGTGG 2 cut(s) 165, 200
CviAII CATG 8 cut(s) 33, 138, 217, 230, 821, 1202, 1283, 1299
CviQI GTAC 3 cut(s) 30, 457, 1216
DdeI CTNAG 2 cut(s) 18, 236
DpnI GATC 9 cut(s) 47, 152, 158, 414, 450, 476, 555, 876, 1020
DpnII GATC 9 cut(s) 45, 150, 156, 412, 448, 474, 553, 874, 1018
DraI TTTAAA 1 cut(s) 928
DriI GACNNNNNGTC 1 cut(s) 973
EaeI YGGCCR 1 cut(s) 361
Eam1104I CTCTTC 2 cut(s) 399, 1221
Eam1105I GACNNNNNGTC 1 cut(s) 973
EarI CTCTTC 2 cut(s) 399, 1221
EciI GGCGGA 1 cut(s) 157
Eco24I GRGCYC 2 cut(s) 686, 835
Eco32I GATATC 1 cut(s) 853
Eco47I GGWCC 2 cut(s) 98, 488
Eco47III AGCGCT 1 cut(s) 563
Eco57I CTGAAG 1 cut(s) 578
Eco72I CACGTG 1 cut(s) 545
Eco88I CYCGRG 1 cut(s) 492
EcoRII CCWGG 2 cut(s) 470, 643
EcoRV GATATC 1 cut(s) 853
EcoT38I GRGCYC 2 cut(s) 686, 835
FaeI CATG 8 cut(s) 36, 141, 220, 233, 824, 1205, 1286, 1302
FalI AAGNNNNNCTT 2 cut(s) 661, 693
FaqI GGGAC 3 cut(s) 365, 386, 1012
FatI CATG 8 cut(s) 32, 137, 216, 229, 820, 1201, 1282, 1298
FauI CCCGC 1 cut(s) 475
FauNDI CATATG 1 cut(s) 952
FbaI TGATCA 3 cut(s) 412, 448, 1018
FblI GTMKAC 1 cut(s) 1270
Fnu4HI GCNGC 9 cut(s) 15, 39, 42, 78, 120, 225, 649, 1148, 1206
FokI GGATG 3 cut(s) 278, 494, 1274
FriOI GRGCYC 2 cut(s) 686, 835
Fsp4HI GCNGC 9 cut(s) 15, 39, 42, 78, 120, 225, 649, 1148, 1206
FspBI CTAG 2 cut(s) 102, 116
GlaI GCGC 2 cut(s) 234, 563
GluI GCNGC 9 cut(s) 15, 39, 42, 78, 120, 225, 649, 1148, 1206
GsuI CTGGAG 2 cut(s) 263, 735
HaeII RGCGCY 1 cut(s) 565
HaeIII GGCC 4 cut(s) 72, 273, 363, 1173
HapII CCGG 5 cut(s) 274, 360, 385, 856, 1274
HgaI GACGC 1 cut(s) 377
HhaI GCGC 2 cut(s) 235, 564
Hin1I GRCGYC 1 cut(s) 388
Hin1II CATG 8 cut(s) 36, 141, 220, 233, 824, 1205, 1286, 1302
Hin6I GCGC 2 cut(s) 233, 562
HinP1I GCGC 2 cut(s) 233, 562
HindIII AAGCTT 1 cut(s) 1027
HinfI GANTC 4 cut(s) 344, 637, 809, 885
HpaII CCGG 5 cut(s) 274, 360, 385, 856, 1274
HphI GGTGA 5 cut(s) 76, 804, 970, 977, 1145
Hpy166II GTNNAC 4 cut(s) 30, 67, 1136, 1271
Hpy188I TCNGA 6 cut(s) 50, 161, 558, 789, 879, 1023
Hpy188III TCNNGA 7 cut(s) 154, 250, 341, 529, 602, 911, 997
Hpy8I GTNNAC 4 cut(s) 30, 67, 1136, 1271
Hpy99I CGWCG 1 cut(s) 338
HpyAV CCTTC 4 cut(s) 340, 663, 696, 1081
HpyCH4III ACNGT 5 cut(s) 311, 325, 461, 488, 536
HpyCH4IV ACGT 2 cut(s) 336, 544
HpyCH4V TGCA 8 cut(s) 8, 77, 85, 176, 227, 1060, 1205, 1243
HpyF10VI GCNNNNNNNGC 5 cut(s) 14, 50, 128, 230, 779
HpyF3I CTNAG 2 cut(s) 18, 236
HpySE526I ACGT 2 cut(s) 336, 544
Hsp92I GRCGYC 1 cut(s) 388
Hsp92II CATG 8 cut(s) 36, 141, 220, 233, 824, 1205, 1286, 1302
HspAI GCGC 2 cut(s) 233, 562
Ksp22I TGATCA 3 cut(s) 412, 448, 1018
Kzo9I GATC 9 cut(s) 45, 150, 156, 412, 448, 474, 553, 874, 1018
LmnI GCTCC 2 cut(s) 913, 1279
Lsp1109I GCAGC 6 cut(s) 28, 89, 131, 211, 635, 1217
LweI GCATC 1 cut(s) 496
MaeI CTAG 2 cut(s) 102, 116
MaeII ACGT 2 cut(s) 336, 544
MaeIII GTNAC 3 cut(s) 709, 860, 965
MalI GATC 9 cut(s) 47, 152, 158, 414, 450, 476, 555, 876, 1020
MboI GATC 9 cut(s) 45, 150, 156, 412, 448, 474, 553, 874, 1018
MboII GAAGA 6 cut(s) 160, 386, 638, 1066, 1136, 1238
MflI RGATCY 3 cut(s) 156, 474, 874
MhlI GDGCHC 2 cut(s) 686, 835
MluCI AATT 5 cut(s) 204, 575, 1005, 1095, 1167
MlyI GAGTC 1 cut(s) 338
MmeI TCCRAC 1 cut(s) 184
MseI TTAA 4 cut(s) 89, 197, 582, 927
MspI CCGG 5 cut(s) 274, 360, 385, 856, 1274
MspR9I CCNGG 3 cut(s) 385, 472, 645
MvaI CCWGG 2 cut(s) 472, 645
MwoI GCNNNNNNNGC 5 cut(s) 14, 50, 128, 230, 779
NciI CCSGG 1 cut(s) 385
NdeI CATATG 1 cut(s) 952
NdeII GATC 9 cut(s) 45, 150, 156, 412, 448, 474, 553, 874, 1018
NlaIII CATG 8 cut(s) 36, 141, 220, 233, 824, 1205, 1286, 1302
NlaIV GGNNCC 2 cut(s) 272, 1069
NmuCI GTSAC 2 cut(s) 860, 965
NspI RCATGY 3 cut(s) 36, 233, 1286
NspV TTCGAA 1 cut(s) 1183
PaeI GCATGC 1 cut(s) 1286
PaeR7I CTCGAG 1 cut(s) 492
PciI ACATGT 1 cut(s) 32
PcsI WCGNNNNNNNCGW 2 cut(s) 185, 339
PfeI GAWTC 3 cut(s) 637, 809, 885
PkrI GCNGC 9 cut(s) 16, 40, 43, 79, 121, 226, 650, 1149, 1207
PleI GAGTC 1 cut(s) 338
PmaCI CACGTG 1 cut(s) 545
PmlI CACGTG 1 cut(s) 545
PpsI GAGTC 1 cut(s) 338
Ppu21I YACGTR 1 cut(s) 545
PscI ACATGT 1 cut(s) 32
Psp6I CCWGG 2 cut(s) 470, 643
PspCI CACGTG 1 cut(s) 545
PspGI CCWGG 2 cut(s) 470, 643
PspN4I GGNNCC 2 cut(s) 272, 1069
PspPI GGNCC 3 cut(s) 98, 271, 488
PspXI VCTCGAGB 1 cut(s) 492
PsuI RGATCY 3 cut(s) 156, 474, 874
RsaI GTAC 3 cut(s) 31, 458, 1217
RsaNI GTAC 3 cut(s) 30, 457, 1216
SaqAI TTAA 4 cut(s) 89, 197, 582, 927
SatI GCNGC 9 cut(s) 15, 39, 42, 78, 120, 225, 649, 1148, 1206
Sau3AI GATC 9 cut(s) 45, 150, 156, 412, 448, 474, 553, 874, 1018
Sau96I GGNCC 3 cut(s) 98, 271, 488
SchI GAGTC 1 cut(s) 338
ScrFI CCNGG 3 cut(s) 385, 472, 645
SduI GDGCHC 2 cut(s) 686, 835
SfaNI GCATC 1 cut(s) 496
SfcI CTRYAG 1 cut(s) 690
Sfr274I CTCGAG 1 cut(s) 492
SfuI TTCGAA 1 cut(s) 1183
SinI GGWCC 2 cut(s) 98, 488
SlaI CTCGAG 1 cut(s) 492
SmlI CTYRAG 1 cut(s) 492
SmoI CTYRAG 1 cut(s) 492
SphI GCATGC 1 cut(s) 1286
Sse9I AATT 5 cut(s) 204, 575, 1005, 1095, 1167
SsiI CCGC 5 cut(s) 14, 38, 142, 468, 1147
SspMI CTAG 2 cut(s) 102, 116
StyD4I CCNGG 3 cut(s) 383, 470, 643
TaaI ACNGT 5 cut(s) 311, 325, 461, 488, 536
TaiI ACGT 2 cut(s) 339, 547
TaqI TCGA 9 cut(s) 153, 333, 423, 435, 493, 517, 552, 894, 1183
TasI AATT 5 cut(s) 204, 575, 1005, 1095, 1167
TatI WGTACW 1 cut(s) 29
TauI GCSGC 3 cut(s) 17, 41, 1150
TfiI GAWTC 3 cut(s) 637, 809, 885
Tru1I TTAA 4 cut(s) 89, 197, 582, 927
Tru9I TTAA 4 cut(s) 89, 197, 582, 927
TscAI CASTG 1 cut(s) 129
TseFI GTSAC 2 cut(s) 860, 965
TseI GCWGC 6 cut(s) 41, 77, 119, 224, 648, 1205
Tsp45I GTSAC 2 cut(s) 860, 965
TspDTI ATGAA 3 cut(s) 741, 1116, 1137
TspGWI ACGGA 2 cut(s) 345, 1016
TspRI CASTG 1 cut(s) 129
VpaK11BI GGWCC 2 cut(s) 98, 488
XapI RAATTY 2 cut(s) 575, 1095
XceI RCATGY 3 cut(s) 36, 233, 1286
XhoI CTCGAG 1 cut(s) 492
XmiI GTMKAC 1 cut(s) 1270
XspI CTAG 2 cut(s) 102, 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.