Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004252

Physical Location & Seq

Genomic Coordinates Forward (+)

71294561 .. 71296430

Gene Structure 1870 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021041

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGACAACAGAGGACGGCGGTGTATCAAAAAAGAGGAAAGCCGTTTCGTTCGACGTTCCCGATCCCGACTCCTCCCCTCCGTCCCGCCACCGCCCCCCCAGTAAAGACTCCCGACGTCTTCTTCCCGACCCCACCGATGCTCATTTGTTCGACAACGAGATCGACTACACTACTGATCGCAAGTACCGTATTCCCGACTGGATCTGGCATGACAATGCTAGAGGTAAAAAAGATGATAATCATCGACTATTGTTCTTGAACAAGAGGGTACGTGAAATTGATCTGAAGCGCTTACAAGTGAAATTTCTTAAAGAGGAAAAGATATTTCAAGATAAGAAACAGAAATGGGTTGAAGAATACTTGAATCAGCCTGGCTGCGACCAGGATGAATTGAAAAAGAACTTGTTTGCGGAGGTATCTAAATGGGAATCACAATACGAGGAGGAGCACTTTAAGCCCTTCTACAAAAAGAGATATGAGATTGTTACTGGAGGAGGATATGAAAAACCAATTAAAGACAAGGGACTGGATTCATTTTGGGTTTCTGCGTTGAAGGCAAATCAGATACTTGTTAGGCAGATTGAATCACCAGACCATGATTATCAGGCTCTCTGTCATCTCACTGATATCAGGTGTCGCAGGCTAGACGATCTGAGAGGATTCAAGCTCGAGACGGAAATTGAATGGTGTGATCAGAAAAGCTTGACAGAGAAACTTCTTTTAGTAAGGTTGCACAGAGGTTCACAAGTCAAAGTTATAGAGAAGTGTCGAAGCTTCTTCAACTTCTTTGAAACAAAAATTTATGAACAGGGTTTTATCTTTAATGAAGAATCTGGTGAACTCAAAGGGCTGCTACCGATGGATTATATAATTGGTCTTGCTATTCGAAACCAAATCATTCCTCATGCAGCATTGTGGTACAAACATGAAGAGGAGAATTGTGTGCAGGATGATGAGACAATCATTCCTTGGGCAGAAGGGTGGTACGAATATGTAATCGATGATTGTAGGCCAGAAGATCATGCTGTCATTTTGACATGCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

349

Amino Acids

41.34

Weight (kDa)

5.76

Isoelectric Point (pI)

48.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	127 - 224	1.7e-12	Nucleosome assembly protein (NAP)
NAP	PF00956	225 - 309	5.2e-12	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004252)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0329211 RchiOBHm_Chr5g0026901
rosa_laevigata	RLG00000005131 RLG00000020175 RLG00000021041 RLG00000029910
rosa_multiflora	Rmu_sc0000203.1_g000002 Rmu_sc0004223.1_g000010 Rmu_sc0014333.1_g000006
rosa_roxburghii	Rroxscaffold_3G00271320 Rroxscaffold_3G00271330
rosa_rugosa	Rorug01G0076600 Rorug01G0076600 Rorug01G0076700 Rorug01G0076800 Rorug01G0076900 Rorug01G0077000 Rorug01G0077100 Rorug06G0447000
rosa_samantha	Rh1AG096000 Rh1AG096100 Rh1BG076500 Rh1BG076600 Rh1BG076800 Rh1BG076900 Rh1CG092800 Rh1DG099400 Rh5AG189400 Rh5CG206400 Rh5DG188600 Rh7BG050000
rosa_wichuraiana	Rw1G007440 Rw5G017220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	118
AciI	CCGC	4 cut(s)	18, 85, 91, 410
AclWI	GGATC	2 cut(s)	56, 209
AcsI	RAATTY	2 cut(s)	302, 798
AcuI	CTGAAG	1 cut(s)	305
AcyI	GRCGYC	1 cut(s)	115
AfaI	GTAC	4 cut(s)	185, 270, 920, 986
AfeI	AGCGCT	1 cut(s)	290
AjnI	CCWGG	2 cut(s)	370, 381
AluBI	AGCT	3 cut(s)	667, 702, 774
AluI	AGCT	3 cut(s)	667, 702, 774
Alw21I	GWGCWC	1 cut(s)	450
Alw26I	GTCTC	2 cut(s)	665, 950
AlwI	GGATC	2 cut(s)	56, 209
Ama87I	CYCGRG	1 cut(s)	668
Aor51HI	AGCGCT	1 cut(s)	290
AoxI	GGCC	1 cut(s)	1010
ApeKI	GCWGC	3 cut(s)	375, 850, 908
ApoI	RAATTY	2 cut(s)	302, 798
AspLEI	GCGC	1 cut(s)	291
AsuHPI	GGTGA	2 cut(s)	579, 848
AsuII	TTCGAA	1 cut(s)	886
AvaI	CYCGRG	1 cut(s)	668
BbsI	GAAGAC	1 cut(s)	110
Bbv12I	GWGCWC	1 cut(s)	450
BbvI	GCAGC	3 cut(s)	362, 837, 920
BccI	CCATC	1 cut(s)	853
BceAI	ACGGC	2 cut(s)	26, 31
BciT130I	CCWGG	2 cut(s)	372, 383
BclI	TGATCA	1 cut(s)	691
BcoDI	GTCTC	2 cut(s)	665, 950
BfaI	CTAG	2 cut(s)	219, 644
BfoI	RGCGCY	1 cut(s)	292
BisI	GCNGC	3 cut(s)	376, 851, 909
BlsI	GCNGC	3 cut(s)	377, 852, 910
Bme1390I	CCNGG	2 cut(s)	372, 383
BmeT110I	CYCGRG	1 cut(s)	668
BmrFI	CCNGG	2 cut(s)	372, 383
BmrI	ACTGGG	1 cut(s)	93
BmsI	GCATC	1 cut(s)	127
BmuI	ACTGGG	1 cut(s)	93
BpiI	GAAGAC	1 cut(s)	110
BpmI	CTGGAG	1 cut(s)	510
Bpu14I	TTCGAA	1 cut(s)	886
Bsa29I	ATCGAT	1 cut(s)	999
BsaAI	YACGTR	1 cut(s)	272
BsaBI	GATNNNNATC	2 cut(s)	237, 240
BsaHI	GRCGYC	1 cut(s)	115
BsaJI	CCNNGG	1 cut(s)	968
Bse1I	ACTGG	4 cut(s)	99, 203, 493, 531
Bse8I	GATNNNNATC	2 cut(s)	237, 240
BseBI	CCWGG	2 cut(s)	372, 383
BseCI	ATCGAT	1 cut(s)	999
BseDI	CCNNGG	1 cut(s)	968
BseGI	GGATG	2 cut(s)	391, 955
BseJI	GATNNNNATC	2 cut(s)	237, 240
BseMII	CTCAG	1 cut(s)	644
BseNI	ACTGG	4 cut(s)	99, 203, 493, 531
BseRI	GAGGAG	5 cut(s)	61, 455, 458, 507, 947
BseXI	GCAGC	3 cut(s)	362, 837, 920
BsgI	GTGCAG	1 cut(s)	965
BshFI	GGCC	1 cut(s)	1012
BshVI	ATCGAT	1 cut(s)	999
BsiHKAI	GWGCWC	1 cut(s)	450
BsiHKCI	CYCGRG	1 cut(s)	668
BslFI	GGGAC	2 cut(s)	67, 537
BsmAI	GTCTC	2 cut(s)	665, 950
BsmBI	CGTCTC	1 cut(s)	665
BsmFI	GGGAC	2 cut(s)	67, 537
BsnI	GGCC	1 cut(s)	1012
BsoBI	CYCGRG	1 cut(s)	668
Bsp119I	TTCGAA	1 cut(s)	886
Bsp1286I	GDGCHC	1 cut(s)	450
Bsp143I	GATC	8 cut(s)	61, 159, 175, 201, 280, 649, 691, 1018
BspACI	CCGC	4 cut(s)	18, 85, 91, 410
BspANI	GGCC	1 cut(s)	1012
BspCNI	CTCAG	1 cut(s)	645
BspDI	ATCGAT	1 cut(s)	999
BspPI	GGATC	2 cut(s)	56, 209
BspT104I	TTCGAA	1 cut(s)	886
BsrI	ACTGG	4 cut(s)	99, 203, 493, 531
BssECI	CCNNGG	1 cut(s)	968
BssMI	GATC	8 cut(s)	61, 159, 175, 201, 280, 649, 691, 1018
BssNI	GRCGYC	1 cut(s)	115
BssT1I	CCWWGG	1 cut(s)	968
Bst2UI	CCWGG	2 cut(s)	372, 383
Bst4CI	ACNGT	1 cut(s)	188
Bst6I	CTCTTC	1 cut(s)	924
BstACI	GRCGYC	1 cut(s)	115
BstBAI	YACGTR	1 cut(s)	272
BstBI	TTCGAA	1 cut(s)	886
BstC8I	GCNNGC	1 cut(s)	641
BstDEI	CTNAG	1 cut(s)	653
BstF5I	GGATG	2 cut(s)	391, 955
BstH2I	RGCGCY	1 cut(s)	292
BstHHI	GCGC	1 cut(s)	291
BstKTI	GATC	8 cut(s)	64, 162, 178, 204, 283, 652, 694, 1021
BstMAI	GTCTC	2 cut(s)	665, 950
BstMBI	GATC	8 cut(s)	61, 159, 175, 201, 280, 649, 691, 1018
BstMWI	GCNNNNNNNGC	2 cut(s)	454, 554
BstNI	CCWGG	2 cut(s)	372, 383
BstNSI	RCATGY	1 cut(s)	1041
BstSCI	CCNGG	2 cut(s)	370, 381
BstV1I	GCAGC	3 cut(s)	362, 837, 920
BstV2I	GAAGAC	1 cut(s)	110
BstX2I	RGATCY	1 cut(s)	201
BstYI	RGATCY	1 cut(s)	201
Bsu15I	ATCGAT	1 cut(s)	999
BsuRI	GGCC	1 cut(s)	1012
BsuTUI	ATCGAT	1 cut(s)	999
BtsCI	GGATG	2 cut(s)	391, 955
BtsIMutI	CAGTG	1 cut(s)	621
Cac8I	GCNNGC	1 cut(s)	641
CfoI	GCGC	1 cut(s)	291
ClaI	ATCGAT	1 cut(s)	999
Csp6I	GTAC	4 cut(s)	184, 269, 919, 985
CviAII	CATG	6 cut(s)	209, 596, 905, 926, 1022, 1038
CviQI	GTAC	4 cut(s)	184, 269, 919, 985
DdeI	CTNAG	1 cut(s)	653
DpnI	GATC	8 cut(s)	63, 161, 177, 203, 282, 651, 693, 1020
DpnII	GATC	8 cut(s)	61, 159, 175, 201, 280, 649, 691, 1018
Eam1104I	CTCTTC	1 cut(s)	924
EarI	CTCTTC	1 cut(s)	924
Eco130I	CCWWGG	1 cut(s)	968
Eco32I	GATATC	1 cut(s)	628
Eco47III	AGCGCT	1 cut(s)	290
Eco57I	CTGAAG	1 cut(s)	305
Eco88I	CYCGRG	1 cut(s)	668
EcoRII	CCWGG	2 cut(s)	370, 381
EcoRV	GATATC	1 cut(s)	628
EcoT14I	CCWWGG	1 cut(s)	968
ErhI	CCWWGG	1 cut(s)	968
Esp3I	CGTCTC	1 cut(s)	665
FaeI	CATG	6 cut(s)	212, 599, 908, 929, 1025, 1041
FaqI	GGGAC	2 cut(s)	67, 537
FatI	CATG	6 cut(s)	208, 595, 904, 925, 1021, 1037
FauI	CCCGC	1 cut(s)	92
FbaI	TGATCA	1 cut(s)	691
Fnu4HI	GCNGC	3 cut(s)	376, 851, 909
FokI	GGATG	2 cut(s)	398, 962
Fsp4HI	GCNGC	3 cut(s)	376, 851, 909
FspBI	CTAG	2 cut(s)	219, 644
GlaI	GCGC	1 cut(s)	290
GluI	GCNGC	3 cut(s)	376, 851, 909
GsuI	CTGGAG	1 cut(s)	510
HaeII	RGCGCY	1 cut(s)	292
HaeIII	GGCC	1 cut(s)	1012
HhaI	GCGC	1 cut(s)	291
Hin1I	GRCGYC	1 cut(s)	115
Hin1II	CATG	6 cut(s)	212, 599, 908, 929, 1025, 1041
Hin6I	GCGC	1 cut(s)	289
HinP1I	GCGC	1 cut(s)	289
HindIII	AAGCTT	2 cut(s)	700, 772
HinfI	GANTC	8 cut(s)	68, 107, 364, 428, 530, 584, 660, 830
HphI	GGTGA	2 cut(s)	579, 848
Hpy166II	GTNNAC	2 cut(s)	743, 839
Hpy188I	TCNGA	4 cut(s)	285, 564, 654, 696
Hpy188III	TCNNGA	8 cut(s)	59, 65, 111, 125, 194, 256, 329, 670
Hpy8I	GTNNAC	2 cut(s)	743, 839
Hpy99I	CGWCG	2 cut(s)	56, 117
HpyAV	CCTTC	3 cut(s)	469, 547, 971
HpyCH4III	ACNGT	1 cut(s)	188
HpyCH4IV	ACGT	3 cut(s)	54, 115, 271
HpyCH4V	TGCA	3 cut(s)	733, 908, 946
HpyF10VI	GCNNNNNNNGC	2 cut(s)	454, 554
HpyF3I	CTNAG	1 cut(s)	653
HpySE526I	ACGT	3 cut(s)	54, 115, 271
Hsp92I	GRCGYC	1 cut(s)	115
Hsp92II	CATG	6 cut(s)	212, 599, 908, 929, 1025, 1041
HspAI	GCGC	1 cut(s)	289
Ksp22I	TGATCA	1 cut(s)	691
Kzo9I	GATC	8 cut(s)	61, 159, 175, 201, 280, 649, 691, 1018
LmnI	GCTCC	1 cut(s)	445
Lsp1109I	GCAGC	3 cut(s)	362, 837, 920
LweI	GCATC	1 cut(s)	127
MaeI	CTAG	2 cut(s)	219, 644
MaeII	ACGT	3 cut(s)	54, 115, 271
MaeIII	GTNAC	1 cut(s)	484
MalI	GATC	8 cut(s)	63, 161, 177, 203, 282, 651, 693, 1020
MboI	GATC	8 cut(s)	61, 159, 175, 201, 280, 649, 691, 1018
MboII	GAAGA	7 cut(s)	110, 113, 365, 769, 839, 941, 1028
MflI	RGATCY	1 cut(s)	201
MhlI	GDGCHC	1 cut(s)	450
MluCI	AATT	8 cut(s)	276, 302, 389, 510, 678, 798, 870, 937
MlyI	GAGTC	2 cut(s)	62, 101
MseI	TTAA	4 cut(s)	309, 453, 513, 822
MslI	CAYNNNNRTG	1 cut(s)	213
MspR9I	CCNGG	2 cut(s)	372, 383
MvaI	CCWGG	2 cut(s)	372, 383
MwoI	GCNNNNNNNGC	2 cut(s)	454, 554
NdeII	GATC	8 cut(s)	61, 159, 175, 201, 280, 649, 691, 1018
NlaIII	CATG	6 cut(s)	212, 599, 908, 929, 1025, 1041
NspI	RCATGY	1 cut(s)	1041
NspV	TTCGAA	1 cut(s)	886
PaeR7I	CTCGAG	1 cut(s)	668
PcsI	WCGNNNNNNNCGW	2 cut(s)	57, 184
PfeI	GAWTC	6 cut(s)	364, 428, 530, 584, 660, 830
PkrI	GCNGC	3 cut(s)	377, 852, 910
PleI	GAGTC	2 cut(s)	62, 101
PpsI	GAGTC	2 cut(s)	62, 101
Ppu21I	YACGTR	1 cut(s)	272
Psp6I	CCWGG	2 cut(s)	370, 381
PspGI	CCWGG	2 cut(s)	370, 381
PsuI	RGATCY	1 cut(s)	201
RsaI	GTAC	4 cut(s)	185, 270, 920, 986
RsaNI	GTAC	4 cut(s)	184, 269, 919, 985
RseI	CAYNNNNRTG	1 cut(s)	213
SaqAI	TTAA	4 cut(s)	309, 453, 513, 822
SatI	GCNGC	3 cut(s)	376, 851, 909
Sau3AI	GATC	8 cut(s)	61, 159, 175, 201, 280, 649, 691, 1018
SchI	GAGTC	2 cut(s)	62, 101
ScrFI	CCNGG	2 cut(s)	372, 383
SduI	GDGCHC	1 cut(s)	450
SfaNI	GCATC	1 cut(s)	127
Sfr274I	CTCGAG	1 cut(s)	668
SfuI	TTCGAA	1 cut(s)	886
SlaI	CTCGAG	1 cut(s)	668
SmiMI	CAYNNNNRTG	1 cut(s)	213
SmlI	CTYRAG	1 cut(s)	668
SmoI	CTYRAG	1 cut(s)	668
Sse9I	AATT	8 cut(s)	276, 302, 389, 510, 678, 798, 870, 937
SsiI	CCGC	4 cut(s)	18, 85, 91, 410
SspMI	CTAG	2 cut(s)	219, 644
StyD4I	CCNGG	2 cut(s)	370, 381
StyI	CCWWGG	1 cut(s)	968
TaaI	ACNGT	1 cut(s)	188
TaiI	ACGT	3 cut(s)	57, 118, 274
TaqI	TCGA	8 cut(s)	51, 150, 162, 244, 669, 769, 886, 999
TasI	AATT	8 cut(s)	276, 302, 389, 510, 678, 798, 870, 937
TfiI	GAWTC	6 cut(s)	364, 428, 530, 584, 660, 830
Tru1I	TTAA	4 cut(s)	309, 453, 513, 822
Tru9I	TTAA	4 cut(s)	309, 453, 513, 822
TscAI	CASTG	1 cut(s)	628
TseI	GCWGC	3 cut(s)	375, 850, 908
TspDTI	ATGAA	6 cut(s)	402, 516, 522, 819, 840, 942
TspGWI	ACGGA	2 cut(s)	69, 689
TspRI	CASTG	1 cut(s)	628
XapI	RAATTY	2 cut(s)	302, 798
XceI	RCATGY	1 cut(s)	1041
XhoI	CTCGAG	1 cut(s)	668
XspI	CTAG	2 cut(s)	219, 644
ZraI	GACGTC	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.