Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004252

Physical Location & Seq

Genomic Coordinates Forward (+)

12586764 .. 12588368

Gene Structure 1605 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0077000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGCACCCCACTCCATTTTCAGCAAGAGCCTCAGATTTTCTCTACTGCTTTGTAGAAATCGACACCCAATGGAGGGATTTGCTTCACATTTGGGTAGAAGACTTATCAGCAACACCGAAATCCCAGCCGGCCAAGACGATTCTACGGTCTCCTACCTGGTTAACTCATGTGGGCTTTCCCCAGAAGCCGCCATTGTAGCATCCCACAAGGTAAAGCTTCGATCTTTGGTGAAATCAGACTCCGTTTTAGCGCTTTTGAAACACTATGAATTATCAGATGCCCATATCTCAAAGGTTGTGCGGATACACCCACATGTTCTGGTGGCAAATGCCCAGGAAACCCTTTTGCCAAAGCTCGAGTTTTTGTGCTCCATAGGAATGTCAAGGCTCGACCTTGCAAAAACACTGACCTACAACCCAATGGTTTTGACGCGAAGCTTGAAAAACTGCATTATACCCTGTTATACCTTCCTCAAAAGCGTGGTGCTCTCTGATTTCAAGGTCGTCAATATTTGGAAGCGCCACCCACGGATTTTCGGGGCAATTCTATCCAAGAATGTGATACCCAATATGGGGCTTCTGAGAGAATTGGGCATGCCCCAGTCCTGTATTGCCCAGTTGCTAACATCTCATGCTGATGTTATGATGAGAAAGCCTGAATTCTTCAGTCAACTTGTGGGTGAGGTCAAAGAAATGGGATTTGACCCTCAAAATGTAAGCTTTGTGAAGGCCATTCCCGCATTATCTGGGAAAGAGACGACATGGAAACGATGTCAAGAGGTTTATAAGAGGTGGGGTTGGTCTGAGAATCATATAGGTTCTGCTTTCAGGCTGTCTCCACAGTGTATGGTTATGTCAGAGAAGAAACTAATGGGAATAATGGATTTCTTAGTGAACAAGATGGGGTGGCAGTCGCAAACAATTGCGAAATATCCCCATGTTTTGACTTACAGCTTGCAGAAGAGAATCATCCCGAGGTTTTCAGTTGTTCGAGTTTTGTTTTTGAAAGGATTGATAGAAGAGGAGAACGTGAGTTTGGCTACTGTGATTTCGAGGTCGGAGGAGTCCTTCTTGGATAGGTTTGTGAACAGATATCTCAGCCAAGTACCTCAATTGTTGGATGTGTACCGTGGAAAAGTGGATATCCAGGATGTGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

386

Amino Acids

43.78

Weight (kDa)

9.58

Isoelectric Point (pI)

49.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mTERF	PF02536	83 - 291	1.3e-27	mTERF
mTERF	PF02536	249 - 358	7.6e-18	mTERF

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004252)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0329211 RchiOBHm_Chr5g0026901
rosa_laevigata	RLG00000005131 RLG00000020175 RLG00000021041 RLG00000029910
rosa_multiflora	Rmu_sc0000203.1_g000002 Rmu_sc0004223.1_g000010 Rmu_sc0014333.1_g000006
rosa_roxburghii	Rroxscaffold_3G00271320 Rroxscaffold_3G00271330
rosa_rugosa	Rorug01G0076600 Rorug01G0076600 Rorug01G0076700 Rorug01G0076800 Rorug01G0076900 Rorug01G0077000 Rorug01G0077100 Rorug06G0447000
rosa_samantha	Rh1AG096000 Rh1AG096100 Rh1BG076500 Rh1BG076600 Rh1BG076800 Rh1BG076900 Rh1CG092800 Rh1DG099400 Rh5AG189400 Rh5CG206400 Rh5DG188600 Rh7BG050000
rosa_wichuraiana	Rw1G007440 Rw5G017220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	786
AccB1I	GGYRCC	1 cut(s)	4
AccII	CGCG	1 cut(s)	433
AciI	CCGC	3 cut(s)	189, 301, 738
AcoI	YGGCCR	1 cut(s)	130
AcsI	RAATTY	1 cut(s)	659
AcuI	CTGAAG	1 cut(s)	649
AfaI	GTAC	2 cut(s)	1107, 1127
AfeI	AGCGCT	1 cut(s)	252
AfiI	CCNNNNNNNGG	4 cut(s)	73, 74, 572, 573
AflIII	ACRYGT	1 cut(s)	313
AgsI	TTSAA	4 cut(s)	259, 442, 499, 1006
AjnI	CCWGG	3 cut(s)	156, 333, 1146
AjuI	GAANNNNNNNTTGG	2 cut(s)	1019, 1051
AluBI	AGCT	5 cut(s)	217, 355, 438, 720, 954
AluI	AGCT	5 cut(s)	217, 355, 438, 720, 954
Alw21I	GWGCWC	2 cut(s)	371, 489
Alw26I	GTCTC	3 cut(s)	154, 749, 840
Ama87I	CYCGRG	2 cut(s)	356, 973
Aor51HI	AGCGCT	1 cut(s)	252
AoxI	GGCC	2 cut(s)	130, 729
ApoI	RAATTY	1 cut(s)	659
AspLEI	GCGC	2 cut(s)	253, 522
AsuHPI	GGTGA	2 cut(s)	241, 692
AvaI	CYCGRG	2 cut(s)	356, 973
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	106
Bbv12I	GWGCWC	2 cut(s)	371, 489
BccI	CCATC	1 cut(s)	895
BciT130I	CCWGG	3 cut(s)	158, 335, 1148
BciVI	GTATCC	1 cut(s)	297
BcoDI	GTCTC	3 cut(s)	154, 749, 840
BfoI	RGCGCY	2 cut(s)	254, 523
BfuI	GTATCC	1 cut(s)	297
BisI	GCNGC	1 cut(s)	189
BlsI	GCNGC	1 cut(s)	190
Bme1390I	CCNGG	3 cut(s)	158, 335, 1148
BmeT110I	CYCGRG	2 cut(s)	356, 973
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	3 cut(s)	158, 335, 1148
BmrI	ACTGGG	2 cut(s)	595, 610
BmsI	GCATC	2 cut(s)	209, 268
BmuI	ACTGGG	2 cut(s)	595, 610
BpiI	GAAGAC	1 cut(s)	106
BsaI	GGTCTC	1 cut(s)	154
BsaJI	CCNNGG	4 cut(s)	333, 527, 974, 1129
Bsc4I	CCNNNNNNNGG	4 cut(s)	73, 74, 572, 573
Bse118I	RCCGGY	1 cut(s)	128
Bse1I	ACTGG	2 cut(s)	601, 616
BseBI	CCWGG	3 cut(s)	158, 335, 1148
BseDI	CCNNGG	4 cut(s)	333, 527, 974, 1129
BseGI	GGATG	4 cut(s)	200, 969, 1126, 1156
BseLI	CCNNNNNNNGG	4 cut(s)	73, 74, 572, 573
BseMII	CTCAG	4 cut(s)	46, 572, 795, 1111
BseNI	ACTGG	2 cut(s)	601, 616
BseRI	GAGGAG	2 cut(s)	1037, 1076
BseYI	CCCAGC	1 cut(s)	124
Bsh1236I	CGCG	1 cut(s)	433
BshFI	GGCC	2 cut(s)	132, 731
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	2 cut(s)	371, 489
BsiHKCI	CYCGRG	2 cut(s)	356, 973
BsiSI	CCGG	1 cut(s)	129
BslI	CCNNNNNNNGG	4 cut(s)	73, 74, 572, 573
BsmAI	GTCTC	3 cut(s)	154, 749, 840
BsmBI	CGTCTC	1 cut(s)	749
BsnI	GGCC	2 cut(s)	132, 731
Bso31I	GGTCTC	1 cut(s)	154
BsoBI	CYCGRG	2 cut(s)	356, 973
Bsp1286I	GDGCHC	2 cut(s)	371, 489
Bsp143I	GATC	1 cut(s)	221
BspACI	CCGC	3 cut(s)	189, 301, 738
BspANI	GGCC	2 cut(s)	132, 731
BspCNI	CTCAG	4 cut(s)	45, 573, 796, 1110
BspFNI	CGCG	1 cut(s)	433
BspLI	GGNNCC	1 cut(s)	6
BspT107I	GGYRCC	1 cut(s)	4
BspTNI	GGTCTC	1 cut(s)	154
BsrFI	RCCGGY	1 cut(s)	128
BsrI	ACTGG	2 cut(s)	601, 616
BssAI	RCCGGY	1 cut(s)	128
BssECI	CCNNGG	4 cut(s)	333, 527, 974, 1129
BssMI	GATC	1 cut(s)	221
Bst2UI	CCWGG	3 cut(s)	158, 335, 1148
Bst4CI	ACNGT	4 cut(s)	148, 843, 1045, 1130
Bst6I	CTCTTC	2 cut(s)	956, 1014
BstC8I	GCNNGC	3 cut(s)	130, 596, 956
BstDEI	CTNAG	5 cut(s)	32, 581, 804, 889, 1097
BstDSI	CCRYGG	2 cut(s)	527, 1129
BstF5I	GGATG	4 cut(s)	200, 969, 1126, 1156
BstFNI	CGCG	1 cut(s)	433
BstH2I	RGCGCY	2 cut(s)	254, 523
BstHHI	GCGC	2 cut(s)	253, 522
BstKTI	GATC	1 cut(s)	224
BstMAI	GTCTC	3 cut(s)	154, 749, 840
BstMBI	GATC	1 cut(s)	221
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 737
BstNI	CCWGG	3 cut(s)	158, 335, 1148
BstNSI	RCATGY	2 cut(s)	317, 598
BstSCI	CCNGG	3 cut(s)	156, 333, 1146
BstUI	CGCG	1 cut(s)	433
BstV2I	GAAGAC	1 cut(s)	106
BsuI	GTATCC	1 cut(s)	297
BsuRI	GGCC	2 cut(s)	132, 731
BtgI	CCRYGG	2 cut(s)	527, 1129
BtsCI	GGATG	4 cut(s)	200, 969, 1126, 1156
BtsIMutI	CAGTG	2 cut(s)	404, 848
Cac8I	GCNNGC	3 cut(s)	130, 596, 956
CfoI	GCGC	2 cut(s)	253, 522
Cfr10I	RCCGGY	1 cut(s)	128
CseI	GACGC	1 cut(s)	439
CsiI	ACCWGGT	1 cut(s)	156
Csp6I	GTAC	2 cut(s)	1106, 1126
CviAII	CATG	6 cut(s)	168, 314, 595, 632, 762, 938
CviQI	GTAC	2 cut(s)	1106, 1126
DdeI	CTNAG	5 cut(s)	32, 581, 804, 889, 1097
DpnI	GATC	1 cut(s)	223
DpnII	GATC	1 cut(s)	221
EaeI	YGGCCR	1 cut(s)	130
Eam1104I	CTCTTC	2 cut(s)	956, 1014
EarI	CTCTTC	2 cut(s)	956, 1014
Eco31I	GGTCTC	1 cut(s)	154
Eco32I	GATATC	2 cut(s)	1094, 1144
Eco47III	AGCGCT	1 cut(s)	252
Eco57I	CTGAAG	1 cut(s)	649
Eco88I	CYCGRG	2 cut(s)	356, 973
EcoRI	GAATTC	1 cut(s)	659
EcoRII	CCWGG	3 cut(s)	156, 333, 1146
EcoRV	GATATC	2 cut(s)	1094, 1144
Esp3I	CGTCTC	1 cut(s)	749
FaeI	CATG	6 cut(s)	171, 317, 598, 635, 765, 941
FatI	CATG	6 cut(s)	167, 313, 594, 631, 761, 937
FauI	CCCGC	1 cut(s)	745
Fnu4HI	GCNGC	1 cut(s)	189
FokI	GGATG	3 cut(s)	187, 956, 1133
Fsp4HI	GCNGC	1 cut(s)	189
GlaI	GCGC	2 cut(s)	252, 521
GluI	GCNGC	1 cut(s)	189
GsaI	CCCAGC	1 cut(s)	128
HaeII	RGCGCY	2 cut(s)	254, 523
HaeIII	GGCC	2 cut(s)	132, 731
HapII	CCGG	1 cut(s)	129
HgaI	GACGC	1 cut(s)	439
HhaI	GCGC	2 cut(s)	253, 522
Hin1II	CATG	6 cut(s)	171, 317, 598, 635, 765, 941
Hin6I	GCGC	2 cut(s)	251, 520
HinP1I	GCGC	2 cut(s)	251, 520
HincII	GTYRAC	2 cut(s)	163, 671
HindII	GTYRAC	2 cut(s)	163, 671
HindIII	AAGCTT	3 cut(s)	215, 436, 718
HinfI	GANTC	5 cut(s)	140, 239, 808, 966, 1064
HpaI	GTTAAC	1 cut(s)	163
HpaII	CCGG	1 cut(s)	129
HphI	GGTGA	2 cut(s)	241, 692
Hpy166II	GTNNAC	5 cut(s)	163, 671, 895, 1087, 1126
Hpy188I	TCNGA	8 cut(s)	35, 238, 277, 493, 582, 805, 859, 1060
Hpy188III	TCNNGA	2 cut(s)	776, 973
Hpy8I	GTNNAC	5 cut(s)	163, 671, 895, 1087, 1126
HpyAV	CCTTC	3 cut(s)	478, 721, 1078
HpyCH4III	ACNGT	4 cut(s)	148, 843, 1045, 1130
HpyCH4IV	ACGT	1 cut(s)	1029
HpyCH4V	TGCA	3 cut(s)	398, 450, 958
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 737
HpyF3I	CTNAG	5 cut(s)	32, 581, 804, 889, 1097
HpySE526I	ACGT	1 cut(s)	1029
Hsp92II	CATG	6 cut(s)	171, 317, 598, 635, 765, 941
HspAI	GCGC	2 cut(s)	251, 520
KroI	GCCGGC	1 cut(s)	128
KroNI	GCCGGC	1 cut(s)	130
KspAI	GTTAAC	1 cut(s)	163
Kzo9I	GATC	1 cut(s)	221
LmnI	GCTCC	1 cut(s)	374
LweI	GCATC	2 cut(s)	209, 268
MabI	ACCWGGT	1 cut(s)	156
MaeII	ACGT	1 cut(s)	1029
MalI	GATC	1 cut(s)	223
MboI	GATC	1 cut(s)	221
MboII	GAAGA	5 cut(s)	111, 655, 874, 973, 1031
MfeI	CAATTG	2 cut(s)	921, 1112
MhlI	GDGCHC	2 cut(s)	371, 489
MluCI	AATT	6 cut(s)	269, 543, 587, 659, 921, 1112
MlyI	GAGTC	2 cut(s)	233, 1073
MmeI	TCCRAC	2 cut(s)	1038, 1098
MroNI	GCCGGC	1 cut(s)	128
MseI	TTAA	1 cut(s)	162
MslI	CAYNNNNRTG	3 cut(s)	312, 377, 636
MspI	CCGG	1 cut(s)	129
MspR9I	CCNGG	3 cut(s)	158, 335, 1148
MunI	CAATTG	2 cut(s)	921, 1112
MvaI	CCWGG	3 cut(s)	158, 335, 1148
MvnI	CGCG	1 cut(s)	433
MwoI	GCNNNNNNNGC	2 cut(s)	197, 737
NaeI	GCCGGC	1 cut(s)	130
NdeII	GATC	1 cut(s)	221
NgoMIV	GCCGGC	1 cut(s)	128
NlaIII	CATG	6 cut(s)	171, 317, 598, 635, 765, 941
NlaIV	GGNNCC	1 cut(s)	6
NspI	RCATGY	2 cut(s)	317, 598
PaeI	GCATGC	1 cut(s)	598
PaeR7I	CTCGAG	1 cut(s)	356
PciI	ACATGT	1 cut(s)	313
PdiI	GCCGGC	1 cut(s)	130
PfeI	GAWTC	3 cut(s)	140, 808, 966
PfoI	TCCNGGA	1 cut(s)	1146
PkrI	GCNGC	1 cut(s)	190
PleI	GAGTC	2 cut(s)	233, 1072
PpsI	GAGTC	2 cut(s)	233, 1072
PscI	ACATGT	1 cut(s)	313
PsiI	TTATAA	1 cut(s)	786
Psp6I	CCWGG	3 cut(s)	156, 333, 1146
PspFI	CCCAGC	1 cut(s)	124
PspGI	CCWGG	3 cut(s)	156, 333, 1146
PspN4I	GGNNCC	1 cut(s)	6
PspXI	VCTCGAGB	1 cut(s)	356
RsaI	GTAC	2 cut(s)	1107, 1127
RsaNI	GTAC	2 cut(s)	1106, 1126
RseI	CAYNNNNRTG	3 cut(s)	312, 377, 636
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	1 cut(s)	189
Sau3AI	GATC	1 cut(s)	221
SchI	GAGTC	2 cut(s)	233, 1073
ScrFI	CCNGG	3 cut(s)	158, 335, 1148
SduI	GDGCHC	2 cut(s)	371, 489
SexAI	ACCWGGT	1 cut(s)	156
SfaNI	GCATC	2 cut(s)	209, 268
Sfr274I	CTCGAG	1 cut(s)	356
SlaI	CTCGAG	1 cut(s)	356
SmiMI	CAYNNNNRTG	3 cut(s)	312, 377, 636
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
SphI	GCATGC	1 cut(s)	598
Sse9I	AATT	6 cut(s)	269, 543, 587, 659, 921, 1112
SsiI	CCGC	3 cut(s)	189, 301, 738
SspI	AATATT	1 cut(s)	511
StyD4I	CCNGG	3 cut(s)	156, 333, 1146
TaaI	ACNGT	4 cut(s)	148, 843, 1045, 1130
TaiI	ACGT	1 cut(s)	1032
TaqI	TCGA	6 cut(s)	61, 220, 357, 390, 991, 1052
TasI	AATT	6 cut(s)	269, 543, 587, 659, 921, 1112
TauI	GCSGC	1 cut(s)	191
TfiI	GAWTC	3 cut(s)	140, 808, 966
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TscAI	CASTG	2 cut(s)	411, 848
TspDTI	ATGAA	1 cut(s)	282
TspGWI	ACGGA	2 cut(s)	232, 544
TspRI	CASTG	2 cut(s)	411, 848
XapI	RAATTY	1 cut(s)	659
XceI	RCATGY	2 cut(s)	317, 598
XhoI	CTCGAG	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.