Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0004252

Physical Location & Seq

Genomic Coordinates Forward (+)

51151405 .. 51153247

Gene Structure 1843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029910

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGACAACAGAGGACGGCGGTGTATCAAAAAAGAGGAAAGCCGTTTCCTTCGACGTTCCCGAACCCGACCCCGACTCCTCCCCTCCGTCCCACCACCGCCCCAATAAGAAACAGAAATGGGTTGAAGAATACTTGAATCAGCCTGGCTGCGACAAGGATGAGTTGAAAAAGAACTTGTTTGCGGAGGTATCTAAATGGGAAGCACGATACGAGGAGGAGCACTTTGAGCCCTTCTACAGAAAGAGATATGAGATTGTTACTGGAGGAGGATATGAAAAACCAATTAAAGTAATGTTGGCTTCTGTGTTTTGTAACGTTGACAAGGGACTGGATGAATTTTGGGTTACTGCGTTGAAGGCAAATCAGATACTTGTTAGGCAGATTGAATCACCAGACCATGATTATCAGGCTCTCTGTCATATCACTGATATCAGGTGTCACAGGATAGACGATCCGAGAGGATTCAAGCTCGAGACGGAAATTGAATGGTATGATAAGAAAAGCTTGACAGAGAGACTTCTTTTAGTAAGGTTGCACAAAGGTTCGCAAGTCAAAGTTATAGAGAAGTGTCGAAGCTTCTTCAACTTCTTTGAAACAAAAATTTATGAACAGGGTTTGATCTTTAATGAAGAATCTGGTGAACTCAAAGGGCTGCTACCGATGGATTATATAATTGGTCTTGCTATTCGAAACCAAATCATTCCTCATGCAGCATTGTGGTACAAACATGAAGAGGAGAATTGTGTGCAGGATGATGAGACAATCATTCCTTGGGCAGAAGGGTGGTACGAATATGTAATCGATGATTGTAGGCCAGAAGAGCATGCTGTCATTTTGACATGCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

283

Amino Acids

33.12

Weight (kDa)

5.26

Isoelectric Point (pI)

45.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	51 - 158	7.6e-14	Nucleosome assembly protein (NAP)
NAP	PF00956	159 - 243	1.8e-12	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004252)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0329211 RchiOBHm_Chr5g0026901
rosa_laevigata	RLG00000005131 RLG00000020175 RLG00000021041 RLG00000029910
rosa_multiflora	Rmu_sc0000203.1_g000002 Rmu_sc0004223.1_g000010 Rmu_sc0014333.1_g000006
rosa_roxburghii	Rroxscaffold_3G00271320 Rroxscaffold_3G00271330
rosa_rugosa	Rorug01G0076600 Rorug01G0076600 Rorug01G0076700 Rorug01G0076800 Rorug01G0076900 Rorug01G0077000 Rorug01G0077100 Rorug06G0447000
rosa_samantha	Rh1AG096000 Rh1AG096100 Rh1BG076500 Rh1BG076600 Rh1BG076800 Rh1BG076900 Rh1CG092800 Rh1DG099400 Rh5AG189400 Rh5CG206400 Rh5DG188600 Rh7BG050000
rosa_wichuraiana	Rw1G007440 Rw5G017220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	18, 97, 182
AclI	AACGTT	1 cut(s)	315
AclWI	GGATC	1 cut(s)	446
AcsI	RAATTY	2 cut(s)	335, 600
AfaI	GTAC	2 cut(s)	722, 788
AgsI	TTSAA	9 cut(s)	125, 136, 166, 355, 386, 466, 485, 583, 593
AjnI	CCWGG	1 cut(s)	142
AluBI	AGCT	3 cut(s)	469, 504, 576
AluI	AGCT	3 cut(s)	469, 504, 576
Alw21I	GWGCWC	1 cut(s)	222
Alw26I	GTCTC	3 cut(s)	467, 508, 752
AlwI	GGATC	1 cut(s)	446
Ama87I	CYCGRG	1 cut(s)	470
AoxI	GGCC	1 cut(s)	812
ApeKI	GCWGC	3 cut(s)	147, 652, 710
ApoI	RAATTY	2 cut(s)	335, 600
AsuHPI	GGTGA	2 cut(s)	381, 650
AsuII	TTCGAA	1 cut(s)	688
AvaI	CYCGRG	1 cut(s)	470
BanII	GRGCYC	1 cut(s)	231
Bbv12I	GWGCWC	1 cut(s)	222
BbvI	GCAGC	3 cut(s)	134, 639, 722
BccI	CCATC	1 cut(s)	655
BceAI	ACGGC	2 cut(s)	26, 31
BciT130I	CCWGG	1 cut(s)	144
BcoDI	GTCTC	3 cut(s)	467, 508, 752
BfmI	CTRYAG	1 cut(s)	235
BisI	GCNGC	3 cut(s)	148, 653, 711
BlsI	GCNGC	3 cut(s)	149, 654, 712
Bme1390I	CCNGG	1 cut(s)	144
BmeT110I	CYCGRG	1 cut(s)	470
BmrFI	CCNGG	1 cut(s)	144
BpmI	CTGGAG	1 cut(s)	282
Bpu14I	TTCGAA	1 cut(s)	688
Bsa29I	ATCGAT	1 cut(s)	801
BsaJI	CCNNGG	1 cut(s)	770
BsaXI	ACNNNNNCTCC	2 cut(s)	59, 89
Bse1I	ACTGG	2 cut(s)	265, 333
BseBI	CCWGG	1 cut(s)	144
BseCI	ATCGAT	1 cut(s)	801
BseDI	CCNNGG	1 cut(s)	770
BseGI	GGATG	3 cut(s)	163, 337, 757
BseNI	ACTGG	2 cut(s)	265, 333
BseRI	GAGGAG	5 cut(s)	67, 227, 230, 279, 749
BseXI	GCAGC	3 cut(s)	134, 639, 722
BsgI	GTGCAG	1 cut(s)	767
BshFI	GGCC	1 cut(s)	814
BshVI	ATCGAT	1 cut(s)	801
BsiHKAI	GWGCWC	1 cut(s)	222
BsiHKCI	CYCGRG	1 cut(s)	470
BslFI	GGGAC	2 cut(s)	73, 339
BsmAI	GTCTC	3 cut(s)	467, 508, 752
BsmBI	CGTCTC	1 cut(s)	467
BsmFI	GGGAC	2 cut(s)	73, 339
BsnI	GGCC	1 cut(s)	814
BsoBI	CYCGRG	1 cut(s)	470
Bsp119I	TTCGAA	1 cut(s)	688
Bsp1286I	GDGCHC	2 cut(s)	222, 231
Bsp143I	GATC	2 cut(s)	451, 618
BspACI	CCGC	3 cut(s)	18, 97, 182
BspANI	GGCC	1 cut(s)	814
BspDI	ATCGAT	1 cut(s)	801
BspPI	GGATC	1 cut(s)	446
BspQI	GCTCTTC	1 cut(s)	813
BspT104I	TTCGAA	1 cut(s)	688
BsrI	ACTGG	2 cut(s)	265, 333
BssECI	CCNNGG	1 cut(s)	770
BssMI	GATC	2 cut(s)	451, 618
BssT1I	CCWWGG	1 cut(s)	770
Bst2UI	CCWGG	1 cut(s)	144
Bst6I	CTCTTC	2 cut(s)	726, 813
BstBI	TTCGAA	1 cut(s)	688
BstC8I	GCNNGC	1 cut(s)	825
BstF5I	GGATG	3 cut(s)	163, 337, 757
BstKTI	GATC	2 cut(s)	454, 621
BstMAI	GTCTC	3 cut(s)	467, 508, 752
BstMBI	GATC	2 cut(s)	451, 618
BstMWI	GCNNNNNNNGC	3 cut(s)	226, 356, 820
BstNI	CCWGG	1 cut(s)	144
BstNSI	RCATGY	2 cut(s)	827, 843
BstSCI	CCNGG	1 cut(s)	142
BstSFI	CTRYAG	1 cut(s)	235
BstV1I	GCAGC	3 cut(s)	134, 639, 722
Bsu15I	ATCGAT	1 cut(s)	801
BsuRI	GGCC	1 cut(s)	814
BsuTUI	ATCGAT	1 cut(s)	801
BtsCI	GGATG	3 cut(s)	163, 337, 757
BtsIMutI	CAGTG	1 cut(s)	423
Cac8I	GCNNGC	1 cut(s)	825
ClaI	ATCGAT	1 cut(s)	801
Csp6I	GTAC	2 cut(s)	721, 787
CviAII	CATG	5 cut(s)	398, 707, 728, 824, 840
CviQI	GTAC	2 cut(s)	721, 787
DpnI	GATC	2 cut(s)	453, 620
DpnII	GATC	2 cut(s)	451, 618
Eam1104I	CTCTTC	2 cut(s)	726, 813
EarI	CTCTTC	2 cut(s)	726, 813
Eco130I	CCWWGG	1 cut(s)	770
Eco24I	GRGCYC	1 cut(s)	231
Eco32I	GATATC	1 cut(s)	430
Eco88I	CYCGRG	1 cut(s)	470
EcoRII	CCWGG	1 cut(s)	142
EcoRV	GATATC	1 cut(s)	430
EcoT14I	CCWWGG	1 cut(s)	770
EcoT38I	GRGCYC	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	770
Esp3I	CGTCTC	1 cut(s)	467
FaeI	CATG	5 cut(s)	401, 710, 731, 827, 843
FalI	AAGNNNNNCTT	2 cut(s)	488, 520
FaqI	GGGAC	2 cut(s)	73, 339
FatI	CATG	5 cut(s)	397, 706, 727, 823, 839
Fnu4HI	GCNGC	3 cut(s)	148, 653, 711
FokI	GGATG	3 cut(s)	170, 344, 764
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	3 cut(s)	148, 653, 711
GluI	GCNGC	3 cut(s)	148, 653, 711
GsuI	CTGGAG	1 cut(s)	282
HaeIII	GGCC	1 cut(s)	814
Hin1II	CATG	5 cut(s)	401, 710, 731, 827, 843
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HindIII	AAGCTT	2 cut(s)	502, 574
HinfI	GANTC	5 cut(s)	74, 136, 386, 462, 632
HphI	GGTGA	2 cut(s)	381, 650
Hpy166II	GTNNAC	2 cut(s)	319, 641
Hpy188I	TCNGA	2 cut(s)	366, 456
Hpy188III	TCNNGA	2 cut(s)	59, 472
Hpy8I	GTNNAC	2 cut(s)	319, 641
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	4 cut(s)	58, 241, 349, 773
HpyCH4IV	ACGT	2 cut(s)	54, 315
HpyCH4V	TGCA	4 cut(s)	535, 710, 748, 843
HpyF10VI	GCNNNNNNNGC	3 cut(s)	226, 356, 820
HpySE526I	ACGT	2 cut(s)	54, 315
Hsp92II	CATG	5 cut(s)	401, 710, 731, 827, 843
Kzo9I	GATC	2 cut(s)	451, 618
LguI	GCTCTTC	1 cut(s)	813
LmnI	GCTCC	1 cut(s)	217
Lsp1109I	GCAGC	3 cut(s)	134, 639, 722
MaeII	ACGT	2 cut(s)	54, 315
MaeIII	GTNAC	4 cut(s)	256, 311, 343, 437
MalI	GATC	2 cut(s)	453, 620
MboI	GATC	2 cut(s)	451, 618
MboII	GAAGA	5 cut(s)	137, 571, 641, 743, 830
MhlI	GDGCHC	2 cut(s)	222, 231
MluCI	AATT	6 cut(s)	282, 335, 480, 600, 672, 739
MlyI	GAGTC	1 cut(s)	68
MseI	TTAA	2 cut(s)	285, 624
MspR9I	CCNGG	1 cut(s)	144
MvaI	CCWGG	1 cut(s)	144
MwoI	GCNNNNNNNGC	3 cut(s)	226, 356, 820
NdeII	GATC	2 cut(s)	451, 618
NlaIII	CATG	5 cut(s)	401, 710, 731, 827, 843
NmuCI	GTSAC	1 cut(s)	437
NspI	RCATGY	2 cut(s)	827, 843
NspV	TTCGAA	1 cut(s)	688
PaeI	GCATGC	1 cut(s)	827
PaeR7I	CTCGAG	1 cut(s)	470
PciSI	GCTCTTC	1 cut(s)	813
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PfeI	GAWTC	4 cut(s)	136, 386, 462, 632
PkrI	GCNGC	3 cut(s)	149, 654, 712
PleI	GAGTC	1 cut(s)	68
PpsI	GAGTC	1 cut(s)	68
Psp1406I	AACGTT	1 cut(s)	315
Psp6I	CCWGG	1 cut(s)	142
PspGI	CCWGG	1 cut(s)	142
RsaI	GTAC	2 cut(s)	722, 788
RsaNI	GTAC	2 cut(s)	721, 787
SapI	GCTCTTC	1 cut(s)	813
SaqAI	TTAA	2 cut(s)	285, 624
SatI	GCNGC	3 cut(s)	148, 653, 711
Sau3AI	GATC	2 cut(s)	451, 618
SchI	GAGTC	1 cut(s)	68
ScrFI	CCNGG	1 cut(s)	144
SduI	GDGCHC	2 cut(s)	222, 231
SetI	ASST	9 cut(s)	57, 189, 318, 437, 471, 506, 533, 544, 578
SfcI	CTRYAG	1 cut(s)	235
Sfr274I	CTCGAG	1 cut(s)	470
SfuI	TTCGAA	1 cut(s)	688
SlaI	CTCGAG	1 cut(s)	470
SmlI	CTYRAG	1 cut(s)	470
SmoI	CTYRAG	1 cut(s)	470
SphI	GCATGC	1 cut(s)	827
Sse9I	AATT	6 cut(s)	282, 335, 480, 600, 672, 739
SsiI	CCGC	3 cut(s)	18, 97, 182
StyD4I	CCNGG	1 cut(s)	142
StyI	CCWWGG	1 cut(s)	770
TaiI	ACGT	2 cut(s)	57, 318
TaqI	TCGA	5 cut(s)	51, 471, 571, 688, 801
TasI	AATT	6 cut(s)	282, 335, 480, 600, 672, 739
TfiI	GAWTC	4 cut(s)	136, 386, 462, 632
Tru1I	TTAA	2 cut(s)	285, 624
Tru9I	TTAA	2 cut(s)	285, 624
TscAI	CASTG	1 cut(s)	430
TseFI	GTSAC	1 cut(s)	437
TseI	GCWGC	3 cut(s)	147, 652, 710
Tsp45I	GTSAC	1 cut(s)	437
TspDTI	ATGAA	5 cut(s)	288, 348, 621, 642, 744
TspGWI	ACGGA	2 cut(s)	75, 491
TspRI	CASTG	1 cut(s)	430
XapI	RAATTY	2 cut(s)	335, 600
XceI	RCATGY	2 cut(s)	827, 843
XhoI	CTCGAG	1 cut(s)	470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.