Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0004252

Physical Location & Seq

Genomic Coordinates Reverse (-)

11835378 .. 11836017

Gene Structure 640 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG076900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGACAACAGAGGACGGCGGTGTATCAAAAAAGAGGAAAGCCGTTACGTTCGACGTTCCCGAACCCGATCCCGACTCCTCCCCTCCGTCCCGCCACCGCCCCAGTAAAGACTCCCGACGTCTTCTTCCCGTCCCCACCGATGCTCATTTGTTCGACAACGAGATCGACTACACTACTGATCGCAAGTACCGTATTCCCGACTGGATCTGGCATGACAATGCTAGAGGTAAAAAAGATGATAATCATCGACTATTTTTCTTGAACGATAGGGTACGTGAAATTGATCTGAAGCGCTTACAAGTGAAATTTCTTAAAGAGGAAAAGATATTTCAAGATAAGAAACAGAAATGGGTTGAAGAATACTTGAATCAGCCTGGCTGCGACCAGGATGAGTTGAAAAAGAACTTGTTTGCGGAGGTATCTAAATGGGAAGCACGATACGAGGAGGAGCACTTTGAGCCCTTCTACAAAAAAGAGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

160

Amino Acids

19.34

Weight (kDa)

6.24

Isoelectric Point (pI)

58.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004252)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0329211 RchiOBHm_Chr5g0026901
rosa_laevigata	RLG00000005131 RLG00000020175 RLG00000021041 RLG00000029910
rosa_multiflora	Rmu_sc0000203.1_g000002 Rmu_sc0004223.1_g000010 Rmu_sc0014333.1_g000006
rosa_roxburghii	Rroxscaffold_3G00271320 Rroxscaffold_3G00271330
rosa_rugosa	Rorug01G0076600 Rorug01G0076600 Rorug01G0076700 Rorug01G0076800 Rorug01G0076900 Rorug01G0077000 Rorug01G0077100 Rorug06G0447000
rosa_samantha	Rh1AG096000 Rh1AG096100 Rh1BG076500 Rh1BG076600 Rh1BG076800 Rh1BG076900 Rh1CG092800 Rh1DG099400 Rh5AG189400 Rh5CG206400 Rh5DG188600 Rh7BG050000
rosa_wichuraiana	Rw1G007440 Rw5G017220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	121
AciI	CCGC	4 cut(s)	18, 91, 97, 413
AclWI	GGATC	2 cut(s)	62, 212
AcsI	RAATTY	1 cut(s)	305
AcuI	CTGAAG	1 cut(s)	308
AcyI	GRCGYC	1 cut(s)	118
AfaI	GTAC	2 cut(s)	188, 273
AfeI	AGCGCT	1 cut(s)	293
AgsI	TTSAA	5 cut(s)	262, 332, 356, 367, 397
AjnI	CCWGG	2 cut(s)	373, 384
Alw21I	GWGCWC	1 cut(s)	453
AlwI	GGATC	2 cut(s)	62, 212
Aor51HI	AGCGCT	1 cut(s)	293
ApeKI	GCWGC	1 cut(s)	378
ApoI	RAATTY	1 cut(s)	305
AspLEI	GCGC	1 cut(s)	294
BanII	GRGCYC	1 cut(s)	462
BbsI	GAAGAC	1 cut(s)	113
Bbv12I	GWGCWC	1 cut(s)	453
BbvI	GCAGC	1 cut(s)	365
BceAI	ACGGC	2 cut(s)	26, 31
BciT130I	CCWGG	2 cut(s)	375, 386
BfaI	CTAG	1 cut(s)	222
BfoI	RGCGCY	1 cut(s)	295
BisI	GCNGC	1 cut(s)	379
BlsI	GCNGC	1 cut(s)	380
Bme1390I	CCNGG	2 cut(s)	375, 386
BmrFI	CCNGG	2 cut(s)	375, 386
BmrI	ACTGGG	1 cut(s)	96
BmsI	GCATC	1 cut(s)	130
BmuI	ACTGGG	1 cut(s)	96
BpiI	GAAGAC	1 cut(s)	113
BsaAI	YACGTR	1 cut(s)	275
BsaBI	GATNNNNATC	2 cut(s)	240, 243
BsaHI	GRCGYC	1 cut(s)	118
Bse1I	ACTGG	2 cut(s)	102, 206
Bse8I	GATNNNNATC	2 cut(s)	240, 243
BseBI	CCWGG	2 cut(s)	375, 386
BseGI	GGATG	1 cut(s)	394
BseJI	GATNNNNATC	2 cut(s)	240, 243
BseNI	ACTGG	2 cut(s)	102, 206
BseRI	GAGGAG	3 cut(s)	67, 458, 461
BseXI	GCAGC	1 cut(s)	365
BsiHKAI	GWGCWC	1 cut(s)	453
BslFI	GGGAC	2 cut(s)	73, 116
BsmFI	GGGAC	2 cut(s)	73, 116
Bsp1286I	GDGCHC	2 cut(s)	453, 462
Bsp143I	GATC	5 cut(s)	67, 162, 178, 204, 283
BspACI	CCGC	4 cut(s)	18, 91, 97, 413
BspPI	GGATC	2 cut(s)	62, 212
BsrI	ACTGG	2 cut(s)	102, 206
BssMI	GATC	5 cut(s)	67, 162, 178, 204, 283
BssNI	GRCGYC	1 cut(s)	118
Bst2UI	CCWGG	2 cut(s)	375, 386
Bst4CI	ACNGT	1 cut(s)	191
BstACI	GRCGYC	1 cut(s)	118
BstBAI	YACGTR	1 cut(s)	275
BstF5I	GGATG	1 cut(s)	394
BstH2I	RGCGCY	1 cut(s)	295
BstHHI	GCGC	1 cut(s)	294
BstKTI	GATC	5 cut(s)	70, 165, 181, 207, 286
BstMBI	GATC	5 cut(s)	67, 162, 178, 204, 283
BstMWI	GCNNNNNNNGC	1 cut(s)	457
BstNI	CCWGG	2 cut(s)	375, 386
BstSCI	CCNGG	2 cut(s)	373, 384
BstV1I	GCAGC	1 cut(s)	365
BstV2I	GAAGAC	1 cut(s)	113
BstX2I	RGATCY	1 cut(s)	204
BstYI	RGATCY	1 cut(s)	204
BtsCI	GGATG	1 cut(s)	394
CfoI	GCGC	1 cut(s)	294
Csp6I	GTAC	2 cut(s)	187, 272
CviAII	CATG	1 cut(s)	212
CviJI	RGCY	4 cut(s)	41, 373, 378, 460
CviKI_1	RGCY	4 cut(s)	41, 373, 378, 460
CviQI	GTAC	2 cut(s)	187, 272
DpnI	GATC	5 cut(s)	69, 164, 180, 206, 285
DpnII	GATC	5 cut(s)	67, 162, 178, 204, 283
Eco24I	GRGCYC	1 cut(s)	462
Eco47III	AGCGCT	1 cut(s)	293
Eco57I	CTGAAG	1 cut(s)	308
EcoRII	CCWGG	2 cut(s)	373, 384
EcoT38I	GRGCYC	1 cut(s)	462
FaeI	CATG	1 cut(s)	215
FaiI	YATR	2 cut(s)	213, 481
FaqI	GGGAC	2 cut(s)	73, 116
FatI	CATG	1 cut(s)	211
FauI	CCCGC	1 cut(s)	98
Fnu4HI	GCNGC	1 cut(s)	379
FokI	GGATG	1 cut(s)	401
FriOI	GRGCYC	1 cut(s)	462
Fsp4HI	GCNGC	1 cut(s)	379
FspBI	CTAG	1 cut(s)	222
GlaI	GCGC	1 cut(s)	293
GluI	GCNGC	1 cut(s)	379
HaeII	RGCGCY	1 cut(s)	295
HhaI	GCGC	1 cut(s)	294
Hin1I	GRCGYC	1 cut(s)	118
Hin1II	CATG	1 cut(s)	215
Hin6I	GCGC	1 cut(s)	292
HinP1I	GCGC	1 cut(s)	292
HinfI	GANTC	3 cut(s)	74, 110, 367
Hpy188I	TCNGA	1 cut(s)	288
Hpy188III	TCNNGA	6 cut(s)	59, 71, 114, 197, 259, 332
Hpy99I	CGWCG	2 cut(s)	56, 120
HpyAV	CCTTC	1 cut(s)	472
HpyCH4III	ACNGT	1 cut(s)	191
HpyCH4IV	ACGT	4 cut(s)	47, 54, 118, 274
HpyF10VI	GCNNNNNNNGC	1 cut(s)	457
HpySE526I	ACGT	4 cut(s)	47, 54, 118, 274
Hsp92I	GRCGYC	1 cut(s)	118
Hsp92II	CATG	1 cut(s)	215
HspAI	GCGC	1 cut(s)	292
Kzo9I	GATC	5 cut(s)	67, 162, 178, 204, 283
LmnI	GCTCC	1 cut(s)	448
LpnPI	CCDG	7 cut(s)	115, 187, 193, 360, 371, 387, 398
Lsp1109I	GCAGC	1 cut(s)	365
LweI	GCATC	1 cut(s)	130
MaeI	CTAG	1 cut(s)	222
MaeII	ACGT	4 cut(s)	47, 54, 118, 274
MaeIII	GTNAC	1 cut(s)	43
MalI	GATC	5 cut(s)	69, 164, 180, 206, 285
MboI	GATC	5 cut(s)	67, 162, 178, 204, 283
MboII	GAAGA	3 cut(s)	113, 116, 368
MflI	RGATCY	1 cut(s)	204
MhlI	GDGCHC	2 cut(s)	453, 462
MluCI	AATT	2 cut(s)	279, 305
MlyI	GAGTC	2 cut(s)	68, 104
MnlI	CCTC	9 cut(s)	4, 27, 88, 93, 218, 310, 409, 436, 439
MseI	TTAA	1 cut(s)	312
MslI	CAYNNNNRTG	1 cut(s)	216
MspR9I	CCNGG	2 cut(s)	375, 386
MvaI	CCWGG	2 cut(s)	375, 386
MwoI	GCNNNNNNNGC	1 cut(s)	457
NdeII	GATC	5 cut(s)	67, 162, 178, 204, 283
NlaIII	CATG	1 cut(s)	215
PcsI	WCGNNNNNNNCGW	2 cut(s)	57, 187
PfeI	GAWTC	1 cut(s)	367
PkrI	GCNGC	1 cut(s)	380
PleI	GAGTC	2 cut(s)	68, 104
PpsI	GAGTC	2 cut(s)	68, 104
Ppu21I	YACGTR	1 cut(s)	275
Psp6I	CCWGG	2 cut(s)	373, 384
PspGI	CCWGG	2 cut(s)	373, 384
PsuI	RGATCY	1 cut(s)	204
RsaI	GTAC	2 cut(s)	188, 273
RsaNI	GTAC	2 cut(s)	187, 272
RseI	CAYNNNNRTG	1 cut(s)	216
SaqAI	TTAA	1 cut(s)	312
SatI	GCNGC	1 cut(s)	379
Sau3AI	GATC	5 cut(s)	67, 162, 178, 204, 283
SchI	GAGTC	2 cut(s)	68, 104
ScrFI	CCNGG	2 cut(s)	375, 386
SduI	GDGCHC	2 cut(s)	453, 462
SetI	ASST	6 cut(s)	50, 57, 121, 229, 277, 420
SfaNI	GCATC	1 cut(s)	130
SmiMI	CAYNNNNRTG	1 cut(s)	216
Sse9I	AATT	2 cut(s)	279, 305
SsiI	CCGC	4 cut(s)	18, 91, 97, 413
SspMI	CTAG	1 cut(s)	222
StyD4I	CCNGG	2 cut(s)	373, 384
TaaI	ACNGT	1 cut(s)	191
TaiI	ACGT	4 cut(s)	50, 57, 121, 277
TaqI	TCGA	4 cut(s)	51, 153, 165, 247
TasI	AATT	2 cut(s)	279, 305
TfiI	GAWTC	1 cut(s)	367
Tru1I	TTAA	1 cut(s)	312
Tru9I	TTAA	1 cut(s)	312
TseI	GCWGC	1 cut(s)	378
TspGWI	ACGGA	1 cut(s)	75
XapI	RAATTY	1 cut(s)	305
XspI	CTAG	1 cut(s)	222
ZraI	GACGTC	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.