Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0004252

Physical Location & Seq

Genomic Coordinates Reverse (-)

15762010 .. 15763855

Gene Structure 1846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G007440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGACAACAGAGGACGGCGGTGTATCAAAAAAGAGGAAAGCCGTTTCGTTCGACGTTCCCGAACCCGAACCCGATCCCGACTCCTCCCCTCCGTCCCGCCACCGCCCCAGTAAAGACTCCCGACGTCTTCTTCCCGTCCCCACCGATGATCATTTGTTCGACAACGAGATCGACTATACTACTGATCGCAAGTACCGTATTCCCGACTGGATCTGGCATGACAATGCTAGAGGTAAAAAAGATGATAATCATCGACTATTGTTCTTGAACAGTAGGGTACGTGAAATTGATCTGAAGCGCTTACAAGTGAAATTTCTTAAAGAGGAAAAGATATTTCAAGATAAGAAACAGAAATGGGTTGAAGAATACTTGAATCAGCCTGGCTGCGACCAGGATGAGTTGAAAAAGAACTTGTTTGCGGAGGTATCTAAATGGGAAGCACGATACGAGGAGGAGCACTTTGAGCCCTTCTACAAAAAGAGATATGAGATTGTTACTGGAGGAGGATATGAAAAACCAATTAAAGACAAGGGACTGGATAGATTTTGGGTTTCTGCGTTGATGGCAAATCAGATAGTTGTTAGGCAGATTGAATCACCAGACCATGATTATCAGGCTCTCTGTCATCTCACTGATATCAGGTGTCACAGGATAAAAGATCCGAGAGGATTCAAGCTCGAGTTTCTCTTTTCTCCTGATAATCCTTTTTTTAAAAATGAAATCCTTACTAAAACATTTGAGATGATTGGTGACAACTCGTTTGTGGTGTTGAAAGGAATTGGGACGGAAATTGAATGGTACGATAGGAAAAGCTTGACAGAGAAACTTCTTTTAGTAAGGTTGCACAAAGGTTCGCAAGTCAAAGTTATAGAGAAGTGTCGAAGCTTCTTCAACTTCTTTGAAACAAAAATTTATGAACAGGGTTTTATCTTTAATGAAGAATCTGGTGAACTCAAAGGGCTGCTACCGATGGATTATATAATTGGTCTTGCTATTCGAAACCAAATCATTCCTCATGCAGCATTGTGGTACAAACATGAAGAGGAGAATTGTGTGCAGGATGATGAGACAATCATTCCTTGGGCAGAAGGGTGGTACGAATATGTAATCGATGATTGTAGGCCAGAAGATCATGCTGTCATTTTGACATGCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

385

Amino Acids

45.64

Weight (kDa)

5.59

Isoelectric Point (pI)

45.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	130 - 346	2.3e-41	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004252)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0329211 RchiOBHm_Chr5g0026901
rosa_laevigata	RLG00000005131 RLG00000020175 RLG00000021041 RLG00000029910
rosa_multiflora	Rmu_sc0000203.1_g000002 Rmu_sc0004223.1_g000010 Rmu_sc0014333.1_g000006
rosa_roxburghii	Rroxscaffold_3G00271320 Rroxscaffold_3G00271330
rosa_rugosa	Rorug01G0076600 Rorug01G0076600 Rorug01G0076700 Rorug01G0076800 Rorug01G0076900 Rorug01G0077000 Rorug01G0077100 Rorug06G0447000
rosa_samantha	Rh1AG096000 Rh1AG096100 Rh1BG076500 Rh1BG076600 Rh1BG076800 Rh1BG076900 Rh1CG092800 Rh1DG099400 Rh5AG189400 Rh5CG206400 Rh5DG188600 Rh7BG050000
rosa_wichuraiana	Rw1G007440 Rw5G017220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	127
AciI	CCGC	4 cut(s)	18, 97, 103, 419
AclWI	GGATC	3 cut(s)	68, 218, 653
AcsI	RAATTY	2 cut(s)	311, 909
AcuI	CTGAAG	1 cut(s)	314
AcyI	GRCGYC	1 cut(s)	124
AfaI	GTAC	5 cut(s)	194, 279, 800, 1031, 1097
AfeI	AGCGCT	1 cut(s)	299
AjnI	CCWGG	2 cut(s)	379, 390
AluBI	AGCT	3 cut(s)	676, 813, 885
AluI	AGCT	3 cut(s)	676, 813, 885
Alw21I	GWGCWC	1 cut(s)	459
Alw26I	GTCTC	1 cut(s)	1061
AlwI	GGATC	3 cut(s)	68, 218, 653
Ama87I	CYCGRG	1 cut(s)	677
Aor51HI	AGCGCT	1 cut(s)	299
AoxI	GGCC	1 cut(s)	1121
ApeKI	GCWGC	3 cut(s)	384, 961, 1019
ApoI	RAATTY	2 cut(s)	311, 909
ArsI	GACNNNNNNTTYG	2 cut(s)	743, 775
AspLEI	GCGC	1 cut(s)	300
AsuHPI	GGTGA	3 cut(s)	588, 761, 959
AsuII	TTCGAA	1 cut(s)	997
AvaI	CYCGRG	1 cut(s)	677
BanII	GRGCYC	1 cut(s)	468
BbsI	GAAGAC	1 cut(s)	119
Bbv12I	GWGCWC	1 cut(s)	459
BbvI	GCAGC	3 cut(s)	371, 948, 1031
BccI	CCATC	2 cut(s)	556, 964
BceAI	ACGGC	2 cut(s)	26, 31
BciT130I	CCWGG	2 cut(s)	381, 392
BclI	TGATCA	1 cut(s)	148
BcoDI	GTCTC	1 cut(s)	1061
BfaI	CTAG	1 cut(s)	228
BfoI	RGCGCY	1 cut(s)	301
BisI	GCNGC	3 cut(s)	385, 962, 1020
BlsI	GCNGC	3 cut(s)	386, 963, 1021
Bme1390I	CCNGG	2 cut(s)	381, 392
BmeT110I	CYCGRG	1 cut(s)	677
BmrFI	CCNGG	2 cut(s)	381, 392
BmrI	ACTGGG	1 cut(s)	102
BmuI	ACTGGG	1 cut(s)	102
BpiI	GAAGAC	1 cut(s)	119
BpmI	CTGGAG	1 cut(s)	519
Bpu14I	TTCGAA	1 cut(s)	997
Bsa29I	ATCGAT	1 cut(s)	1110
BsaAI	YACGTR	1 cut(s)	281
BsaBI	GATNNNNATC	2 cut(s)	246, 249
BsaHI	GRCGYC	1 cut(s)	124
BsaJI	CCNNGG	1 cut(s)	1079
Bse1I	ACTGG	4 cut(s)	108, 212, 502, 540
Bse8I	GATNNNNATC	2 cut(s)	246, 249
BseBI	CCWGG	2 cut(s)	381, 392
BseCI	ATCGAT	1 cut(s)	1110
BseDI	CCNNGG	1 cut(s)	1079
BseGI	GGATG	2 cut(s)	400, 1066
BseJI	GATNNNNATC	2 cut(s)	246, 249
BseNI	ACTGG	4 cut(s)	108, 212, 502, 540
BseRI	GAGGAG	5 cut(s)	73, 464, 467, 516, 1058
BseXI	GCAGC	3 cut(s)	371, 948, 1031
BsgI	GTGCAG	1 cut(s)	1076
BshFI	GGCC	1 cut(s)	1123
BshVI	ATCGAT	1 cut(s)	1110
BsiHKAI	GWGCWC	1 cut(s)	459
BsiHKCI	CYCGRG	1 cut(s)	677
BslFI	GGGAC	4 cut(s)	79, 122, 546, 796
BsmAI	GTCTC	1 cut(s)	1061
BsmFI	GGGAC	4 cut(s)	79, 122, 546, 796
BsnI	GGCC	1 cut(s)	1123
BsoBI	CYCGRG	1 cut(s)	677
Bsp119I	TTCGAA	1 cut(s)	997
Bsp1286I	GDGCHC	2 cut(s)	459, 468
Bsp143I	GATC	8 cut(s)	73, 148, 168, 184, 210, 289, 658, 1129
BspACI	CCGC	4 cut(s)	18, 97, 103, 419
BspANI	GGCC	1 cut(s)	1123
BspDI	ATCGAT	1 cut(s)	1110
BspPI	GGATC	3 cut(s)	68, 218, 653
BspT104I	TTCGAA	1 cut(s)	997
BsrI	ACTGG	4 cut(s)	108, 212, 502, 540
BssECI	CCNNGG	1 cut(s)	1079
BssMI	GATC	8 cut(s)	73, 148, 168, 184, 210, 289, 658, 1129
BssNI	GRCGYC	1 cut(s)	124
BssT1I	CCWWGG	1 cut(s)	1079
Bst2UI	CCWGG	2 cut(s)	381, 392
Bst4CI	ACNGT	2 cut(s)	197, 272
Bst6I	CTCTTC	1 cut(s)	1035
BstACI	GRCGYC	1 cut(s)	124
BstBAI	YACGTR	1 cut(s)	281
BstBI	TTCGAA	1 cut(s)	997
BstF5I	GGATG	2 cut(s)	400, 1066
BstH2I	RGCGCY	1 cut(s)	301
BstHHI	GCGC	1 cut(s)	300
BstKTI	GATC	8 cut(s)	76, 151, 171, 187, 213, 292, 661, 1132
BstMAI	GTCTC	1 cut(s)	1061
BstMBI	GATC	8 cut(s)	73, 148, 168, 184, 210, 289, 658, 1129
BstMWI	GCNNNNNNNGC	2 cut(s)	463, 563
BstNI	CCWGG	2 cut(s)	381, 392
BstNSI	RCATGY	1 cut(s)	1152
BstSCI	CCNGG	2 cut(s)	379, 390
BstV1I	GCAGC	3 cut(s)	371, 948, 1031
BstV2I	GAAGAC	1 cut(s)	119
BstX2I	RGATCY	2 cut(s)	210, 658
BstYI	RGATCY	2 cut(s)	210, 658
Bsu15I	ATCGAT	1 cut(s)	1110
BsuRI	GGCC	1 cut(s)	1123
BsuTUI	ATCGAT	1 cut(s)	1110
BtsCI	GGATG	2 cut(s)	400, 1066
BtsIMutI	CAGTG	1 cut(s)	630
CfoI	GCGC	1 cut(s)	300
ClaI	ATCGAT	1 cut(s)	1110
Csp6I	GTAC	5 cut(s)	193, 278, 799, 1030, 1096
CviAII	CATG	6 cut(s)	218, 605, 1016, 1037, 1133, 1149
CviQI	GTAC	5 cut(s)	193, 278, 799, 1030, 1096
DpnI	GATC	8 cut(s)	75, 150, 170, 186, 212, 291, 660, 1131
DpnII	GATC	8 cut(s)	73, 148, 168, 184, 210, 289, 658, 1129
DraI	TTTAAA	1 cut(s)	712
Eam1104I	CTCTTC	1 cut(s)	1035
EarI	CTCTTC	1 cut(s)	1035
Eco130I	CCWWGG	1 cut(s)	1079
Eco24I	GRGCYC	1 cut(s)	468
Eco32I	GATATC	1 cut(s)	637
Eco47III	AGCGCT	1 cut(s)	299
Eco57I	CTGAAG	1 cut(s)	314
Eco88I	CYCGRG	1 cut(s)	677
EcoRII	CCWGG	2 cut(s)	379, 390
EcoRV	GATATC	1 cut(s)	637
EcoT14I	CCWWGG	1 cut(s)	1079
EcoT38I	GRGCYC	1 cut(s)	468
ErhI	CCWWGG	1 cut(s)	1079
FaeI	CATG	6 cut(s)	221, 608, 1019, 1040, 1136, 1152
FaqI	GGGAC	4 cut(s)	79, 122, 546, 796
FatI	CATG	6 cut(s)	217, 604, 1015, 1036, 1132, 1148
FauI	CCCGC	1 cut(s)	104
FbaI	TGATCA	1 cut(s)	148
Fnu4HI	GCNGC	3 cut(s)	385, 962, 1020
FokI	GGATG	2 cut(s)	407, 1073
FriOI	GRGCYC	1 cut(s)	468
Fsp4HI	GCNGC	3 cut(s)	385, 962, 1020
FspBI	CTAG	1 cut(s)	228
GlaI	GCGC	1 cut(s)	299
GluI	GCNGC	3 cut(s)	385, 962, 1020
GsuI	CTGGAG	1 cut(s)	519
HaeII	RGCGCY	1 cut(s)	301
HaeIII	GGCC	1 cut(s)	1123
HhaI	GCGC	1 cut(s)	300
Hin1I	GRCGYC	1 cut(s)	124
Hin1II	CATG	6 cut(s)	221, 608, 1019, 1040, 1136, 1152
Hin6I	GCGC	1 cut(s)	298
HinP1I	GCGC	1 cut(s)	298
HindIII	AAGCTT	2 cut(s)	811, 883
HinfI	GANTC	6 cut(s)	80, 116, 373, 593, 669, 941
HphI	GGTGA	3 cut(s)	588, 761, 959
Hpy166II	GTNNAC	1 cut(s)	950
Hpy188I	TCNGA	3 cut(s)	294, 573, 663
Hpy188III	TCNNGA	7 cut(s)	59, 77, 120, 203, 265, 338, 695
Hpy8I	GTNNAC	1 cut(s)	950
Hpy99I	CGWCG	2 cut(s)	56, 126
HpyAV	CCTTC	2 cut(s)	478, 1082
HpyCH4III	ACNGT	2 cut(s)	197, 272
HpyCH4IV	ACGT	3 cut(s)	54, 124, 280
HpyCH4V	TGCA	3 cut(s)	844, 1019, 1057
HpyF10VI	GCNNNNNNNGC	2 cut(s)	463, 563
HpySE526I	ACGT	3 cut(s)	54, 124, 280
Hsp92I	GRCGYC	1 cut(s)	124
Hsp92II	CATG	6 cut(s)	221, 608, 1019, 1040, 1136, 1152
HspAI	GCGC	1 cut(s)	298
Ksp22I	TGATCA	1 cut(s)	148
Kzo9I	GATC	8 cut(s)	73, 148, 168, 184, 210, 289, 658, 1129
LmnI	GCTCC	1 cut(s)	454
Lsp1109I	GCAGC	3 cut(s)	371, 948, 1031
MaeI	CTAG	1 cut(s)	228
MaeII	ACGT	3 cut(s)	54, 124, 280
MaeIII	GTNAC	3 cut(s)	493, 644, 749
MalI	GATC	8 cut(s)	75, 150, 170, 186, 212, 291, 660, 1131
MboI	GATC	8 cut(s)	73, 148, 168, 184, 210, 289, 658, 1129
MboII	GAAGA	7 cut(s)	119, 122, 374, 880, 950, 1052, 1139
MflI	RGATCY	2 cut(s)	210, 658
MhlI	GDGCHC	2 cut(s)	459, 468
MluCI	AATT	8 cut(s)	285, 311, 519, 777, 789, 909, 981, 1048
MlyI	GAGTC	2 cut(s)	74, 110
MseI	TTAA	4 cut(s)	318, 522, 711, 933
MslI	CAYNNNNRTG	1 cut(s)	222
MspR9I	CCNGG	2 cut(s)	381, 392
MvaI	CCWGG	2 cut(s)	381, 392
MwoI	GCNNNNNNNGC	2 cut(s)	463, 563
NdeII	GATC	8 cut(s)	73, 148, 168, 184, 210, 289, 658, 1129
NlaIII	CATG	6 cut(s)	221, 608, 1019, 1040, 1136, 1152
NmuCI	GTSAC	2 cut(s)	644, 749
NspI	RCATGY	1 cut(s)	1152
NspV	TTCGAA	1 cut(s)	997
PaeR7I	CTCGAG	1 cut(s)	677
PcsI	WCGNNNNNNNCGW	2 cut(s)	57, 193
PfeI	GAWTC	4 cut(s)	373, 593, 669, 941
PkrI	GCNGC	3 cut(s)	386, 963, 1021
PleI	GAGTC	2 cut(s)	74, 110
PpsI	GAGTC	2 cut(s)	74, 110
Ppu21I	YACGTR	1 cut(s)	281
Psp6I	CCWGG	2 cut(s)	379, 390
PspGI	CCWGG	2 cut(s)	379, 390
PspXI	VCTCGAGB	1 cut(s)	677
PsuI	RGATCY	2 cut(s)	210, 658
RsaI	GTAC	5 cut(s)	194, 279, 800, 1031, 1097
RsaNI	GTAC	5 cut(s)	193, 278, 799, 1030, 1096
RseI	CAYNNNNRTG	1 cut(s)	222
SaqAI	TTAA	4 cut(s)	318, 522, 711, 933
SatI	GCNGC	3 cut(s)	385, 962, 1020
Sau3AI	GATC	8 cut(s)	73, 148, 168, 184, 210, 289, 658, 1129
SchI	GAGTC	2 cut(s)	74, 110
ScrFI	CCNGG	2 cut(s)	381, 392
SduI	GDGCHC	2 cut(s)	459, 468
Sfr274I	CTCGAG	1 cut(s)	677
SfuI	TTCGAA	1 cut(s)	997
SlaI	CTCGAG	1 cut(s)	677
SmiMI	CAYNNNNRTG	1 cut(s)	222
SmlI	CTYRAG	1 cut(s)	677
SmoI	CTYRAG	1 cut(s)	677
Sse9I	AATT	8 cut(s)	285, 311, 519, 777, 789, 909, 981, 1048
SsiI	CCGC	4 cut(s)	18, 97, 103, 419
SspMI	CTAG	1 cut(s)	228
StyD4I	CCNGG	2 cut(s)	379, 390
StyI	CCWWGG	1 cut(s)	1079
TaaI	ACNGT	2 cut(s)	197, 272
TaiI	ACGT	3 cut(s)	57, 127, 283
TaqI	TCGA	8 cut(s)	51, 159, 171, 253, 678, 880, 997, 1110
TasI	AATT	8 cut(s)	285, 311, 519, 777, 789, 909, 981, 1048
TfiI	GAWTC	4 cut(s)	373, 593, 669, 941
Tru1I	TTAA	4 cut(s)	318, 522, 711, 933
Tru9I	TTAA	4 cut(s)	318, 522, 711, 933
TscAI	CASTG	1 cut(s)	637
TseFI	GTSAC	2 cut(s)	644, 749
TseI	GCWGC	3 cut(s)	384, 961, 1019
Tsp45I	GTSAC	2 cut(s)	644, 749
TspDTI	ATGAA	5 cut(s)	525, 732, 930, 951, 1053
TspGWI	ACGGA	2 cut(s)	81, 800
TspRI	CASTG	1 cut(s)	637
XapI	RAATTY	2 cut(s)	311, 909
XceI	RCATGY	1 cut(s)	1152
XhoI	CTCGAG	1 cut(s)	677
XspI	CTAG	1 cut(s)	228
ZraI	GACGTC	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.