Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0004252

Physical Location & Seq

Genomic Coordinates Reverse (-)

19891656 .. 19894734

Gene Structure 3079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG092800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGACAACAGAGGACGGCGGTGTATCAAAAAAGAGGAAAGCCGTTTCGTTCGACGTTTCCGAACCCGATCCCGACTCCTCCCCTCCGTCCCGCCACCGCCCCAGTAAAGACTCCCGACGTCGTCTTCCCGTCCCCACCGATGATCATTTGTTCGACAACGATATCGACTACACTACTGATCGCAAGTACCGTATTCCCGACTGGATCTGGCATGACAATGCTAGAGGTAAAAAAGATGATAATCATCGACTATTGTCCTTGAACCGTAGGGTACGTGAAATTGATCTGAAGCGCTTACAAGTGAAATTTCTTAAAGAGGAAAAGATATTTCAAGATAAGAAACAGAAATGGGTTGAAGAATACTTGAATCAGCCTGGCTGCGACCAGGATGAGTTGAAAAAGAACTTGTTTGCGGAGGTATCTAAATGGGAAGCACGATACGAGGAGGAGCACTTTGAGCCCTTCTACAAAAAGAGATATGAGATTGTTACTGGAGGAGGATATGAAAAACCAATTAAAGACAAGGGACTGGATTCATTTTGGGTTTCTGCGTTGAAGGCAAATCAGATAGTCGTTAGGCAGATTGAATCACCAGACCATGATTATCAGGCTCTCTGTCATCTCACTGATATCAGGTGTCACAGGATAAAAGATCCGAGAGGATTCAAGCTCGAGTTTCTCTTTTCTCCTGATAATCCTTTTTTTAAAAATGAAATCCTTACTAAAACATTTGAGATGATTGGTGACAACTCGTCTGTGGTGTTGAAAGCAATTGGGACGGAAATTGAATGGTATGATAAGAAAAGCTTGACAGAGAAACTTCTTTTAGTAAGGTTGCACAAAGGTTCGCAAGTCAAAGTTATAGAGAAGTGTCGAAGCTTCTTCAACTTCTTTGAAACAAAAATTTATGAACACGGTTTTATCTTTAATGAAGAATCTGGTGAACTCAAAGGGCTGCTACCGATGGATTATATAATTGGTCTTGCTATTCGAAACCAAATCATTCCTCATGCAGCATTGTGGTACAAACATGAAGAGGAGAATTGTGTGCCGGATGATGAGAGAATCATTCCTTGGGCAGAAGGGTGGTACGAATATGTAATCGATGATTGTAGGCCAGAAGATCATGCTGTCATTTTGACATGCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

383

Amino Acids

45.33

Weight (kDa)

5.96

Isoelectric Point (pI)

46.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	128 - 344	8.4e-43	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004252)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0329211 RchiOBHm_Chr5g0026901
rosa_laevigata	RLG00000005131 RLG00000020175 RLG00000021041 RLG00000029910
rosa_multiflora	Rmu_sc0000203.1_g000002 Rmu_sc0004223.1_g000010 Rmu_sc0014333.1_g000006
rosa_roxburghii	Rroxscaffold_3G00271320 Rroxscaffold_3G00271330
rosa_rugosa	Rorug01G0076600 Rorug01G0076600 Rorug01G0076700 Rorug01G0076800 Rorug01G0076900 Rorug01G0077000 Rorug01G0077100 Rorug06G0447000
rosa_samantha	Rh1AG096000 Rh1AG096100 Rh1BG076500 Rh1BG076600 Rh1BG076800 Rh1BG076900 Rh1CG092800 Rh1DG099400 Rh5AG189400 Rh5CG206400 Rh5DG188600 Rh7BG050000
rosa_wichuraiana	Rw1G007440 Rw5G017220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	121
AciI	CCGC	4 cut(s)	18, 91, 97, 413
AclWI	GGATC	3 cut(s)	62, 212, 647
AcsI	RAATTY	2 cut(s)	305, 903
AcuI	CTGAAG	1 cut(s)	308
AcyI	GRCGYC	1 cut(s)	118
AfaI	GTAC	4 cut(s)	188, 273, 1025, 1091
AfeI	AGCGCT	1 cut(s)	293
AhdI	GACNNNNNGTC	1 cut(s)	751
AjnI	CCWGG	2 cut(s)	373, 384
AjuI	GAANNNNNNNTTGG	2 cut(s)	1057, 1089
AluBI	AGCT	3 cut(s)	670, 807, 879
AluI	AGCT	3 cut(s)	670, 807, 879
Alw21I	GWGCWC	1 cut(s)	453
AlwI	GGATC	3 cut(s)	62, 212, 647
Ama87I	CYCGRG	1 cut(s)	671
Aor51HI	AGCGCT	1 cut(s)	293
AoxI	GGCC	1 cut(s)	1115
ApeKI	GCWGC	3 cut(s)	378, 955, 1013
ApoI	RAATTY	2 cut(s)	305, 903
AspLEI	GCGC	1 cut(s)	294
AsuHPI	GGTGA	3 cut(s)	582, 755, 953
AsuII	TTCGAA	1 cut(s)	991
AvaI	CYCGRG	1 cut(s)	671
BanII	GRGCYC	1 cut(s)	462
BbsI	GAAGAC	1 cut(s)	116
Bbv12I	GWGCWC	1 cut(s)	453
BbvI	GCAGC	3 cut(s)	365, 942, 1025
BccI	CCATC	1 cut(s)	958
BceAI	ACGGC	2 cut(s)	26, 31
BciT130I	CCWGG	2 cut(s)	375, 386
BclI	TGATCA	1 cut(s)	142
BfaI	CTAG	1 cut(s)	222
BfoI	RGCGCY	1 cut(s)	295
BisI	GCNGC	3 cut(s)	379, 956, 1014
BlsI	GCNGC	3 cut(s)	380, 957, 1015
Bme1390I	CCNGG	2 cut(s)	375, 386
BmeRI	GACNNNNNGTC	1 cut(s)	751
BmeT110I	CYCGRG	1 cut(s)	671
BmrFI	CCNGG	2 cut(s)	375, 386
BmrI	ACTGGG	1 cut(s)	96
BmuI	ACTGGG	1 cut(s)	96
BoxI	GACNNNNGTC	1 cut(s)	253
BpiI	GAAGAC	1 cut(s)	116
BpmI	CTGGAG	1 cut(s)	513
Bpu14I	TTCGAA	1 cut(s)	991
Bsa29I	ATCGAT	1 cut(s)	1104
BsaAI	YACGTR	1 cut(s)	275
BsaBI	GATNNNNATC	2 cut(s)	240, 243
BsaHI	GRCGYC	1 cut(s)	118
BsaJI	CCNNGG	1 cut(s)	1073
Bse1I	ACTGG	4 cut(s)	102, 206, 496, 534
Bse8I	GATNNNNATC	2 cut(s)	240, 243
BseBI	CCWGG	2 cut(s)	375, 386
BseCI	ATCGAT	1 cut(s)	1104
BseDI	CCNNGG	1 cut(s)	1073
BseGI	GGATG	2 cut(s)	394, 1060
BseJI	GATNNNNATC	2 cut(s)	240, 243
BseNI	ACTGG	4 cut(s)	102, 206, 496, 534
BseRI	GAGGAG	5 cut(s)	67, 458, 461, 510, 1052
BseXI	GCAGC	3 cut(s)	365, 942, 1025
BshFI	GGCC	1 cut(s)	1117
BshVI	ATCGAT	1 cut(s)	1104
BsiHKAI	GWGCWC	1 cut(s)	453
BsiHKCI	CYCGRG	1 cut(s)	671
BsiSI	CCGG	1 cut(s)	1052
BslFI	GGGAC	4 cut(s)	73, 116, 540, 790
BsmFI	GGGAC	4 cut(s)	73, 116, 540, 790
BsnI	GGCC	1 cut(s)	1117
BsoBI	CYCGRG	1 cut(s)	671
Bsp119I	TTCGAA	1 cut(s)	991
Bsp1286I	GDGCHC	2 cut(s)	453, 462
Bsp143I	GATC	7 cut(s)	67, 142, 178, 204, 283, 652, 1123
BspACI	CCGC	4 cut(s)	18, 91, 97, 413
BspANI	GGCC	1 cut(s)	1117
BspDI	ATCGAT	1 cut(s)	1104
BspPI	GGATC	3 cut(s)	62, 212, 647
BspT104I	TTCGAA	1 cut(s)	991
BsrI	ACTGG	4 cut(s)	102, 206, 496, 534
BssECI	CCNNGG	1 cut(s)	1073
BssMI	GATC	7 cut(s)	67, 142, 178, 204, 283, 652, 1123
BssNI	GRCGYC	1 cut(s)	118
BssT1I	CCWWGG	1 cut(s)	1073
Bst2UI	CCWGG	2 cut(s)	375, 386
Bst4CI	ACNGT	3 cut(s)	191, 266, 917
Bst6I	CTCTTC	1 cut(s)	1029
BstACI	GRCGYC	1 cut(s)	118
BstBAI	YACGTR	1 cut(s)	275
BstBI	TTCGAA	1 cut(s)	991
BstF5I	GGATG	2 cut(s)	394, 1060
BstH2I	RGCGCY	1 cut(s)	295
BstHHI	GCGC	1 cut(s)	294
BstKTI	GATC	7 cut(s)	70, 145, 181, 207, 286, 655, 1126
BstMBI	GATC	7 cut(s)	67, 142, 178, 204, 283, 652, 1123
BstMWI	GCNNNNNNNGC	2 cut(s)	457, 557
BstNI	CCWGG	2 cut(s)	375, 386
BstNSI	RCATGY	1 cut(s)	1146
BstPAI	GACNNNNGTC	1 cut(s)	253
BstSCI	CCNGG	2 cut(s)	373, 384
BstV1I	GCAGC	3 cut(s)	365, 942, 1025
BstV2I	GAAGAC	1 cut(s)	116
BstX2I	RGATCY	2 cut(s)	204, 652
BstYI	RGATCY	2 cut(s)	204, 652
Bsu15I	ATCGAT	1 cut(s)	1104
BsuRI	GGCC	1 cut(s)	1117
BsuTUI	ATCGAT	1 cut(s)	1104
BtsCI	GGATG	2 cut(s)	394, 1060
BtsIMutI	CAGTG	1 cut(s)	624
CfoI	GCGC	1 cut(s)	294
ClaI	ATCGAT	1 cut(s)	1104
Csp6I	GTAC	4 cut(s)	187, 272, 1024, 1090
CviAII	CATG	6 cut(s)	212, 599, 1010, 1031, 1127, 1143
CviQI	GTAC	4 cut(s)	187, 272, 1024, 1090
DpnI	GATC	7 cut(s)	69, 144, 180, 206, 285, 654, 1125
DpnII	GATC	7 cut(s)	67, 142, 178, 204, 283, 652, 1123
DraI	TTTAAA	1 cut(s)	706
DriI	GACNNNNNGTC	1 cut(s)	751
Eam1104I	CTCTTC	1 cut(s)	1029
Eam1105I	GACNNNNNGTC	1 cut(s)	751
EarI	CTCTTC	1 cut(s)	1029
Eco130I	CCWWGG	1 cut(s)	1073
Eco24I	GRGCYC	1 cut(s)	462
Eco32I	GATATC	2 cut(s)	163, 631
Eco47III	AGCGCT	1 cut(s)	293
Eco57I	CTGAAG	1 cut(s)	308
Eco88I	CYCGRG	1 cut(s)	671
EcoRII	CCWGG	2 cut(s)	373, 384
EcoRV	GATATC	2 cut(s)	163, 631
EcoT14I	CCWWGG	1 cut(s)	1073
EcoT38I	GRGCYC	1 cut(s)	462
ErhI	CCWWGG	1 cut(s)	1073
FaeI	CATG	6 cut(s)	215, 602, 1013, 1034, 1130, 1146
FalI	AAGNNNNNCTT	2 cut(s)	791, 823
FaqI	GGGAC	4 cut(s)	73, 116, 540, 790
FatI	CATG	6 cut(s)	211, 598, 1009, 1030, 1126, 1142
FauI	CCCGC	1 cut(s)	98
FbaI	TGATCA	1 cut(s)	142
Fnu4HI	GCNGC	3 cut(s)	379, 956, 1014
FokI	GGATG	2 cut(s)	401, 1067
FriOI	GRGCYC	1 cut(s)	462
Fsp4HI	GCNGC	3 cut(s)	379, 956, 1014
FspBI	CTAG	1 cut(s)	222
GlaI	GCGC	1 cut(s)	293
GluI	GCNGC	3 cut(s)	379, 956, 1014
GsuI	CTGGAG	1 cut(s)	513
HaeII	RGCGCY	1 cut(s)	295
HaeIII	GGCC	1 cut(s)	1117
HapII	CCGG	1 cut(s)	1052
HhaI	GCGC	1 cut(s)	294
Hin1I	GRCGYC	1 cut(s)	118
Hin1II	CATG	6 cut(s)	215, 602, 1013, 1034, 1130, 1146
Hin6I	GCGC	1 cut(s)	292
HinP1I	GCGC	1 cut(s)	292
HindIII	AAGCTT	2 cut(s)	805, 877
HinfI	GANTC	8 cut(s)	74, 110, 367, 533, 587, 663, 935, 1065
HpaII	CCGG	1 cut(s)	1052
HphI	GGTGA	3 cut(s)	582, 755, 953
Hpy166II	GTNNAC	1 cut(s)	944
Hpy188I	TCNGA	4 cut(s)	61, 288, 567, 657
Hpy188III	TCNNGA	5 cut(s)	71, 114, 197, 332, 689
Hpy8I	GTNNAC	1 cut(s)	944
Hpy99I	CGWCG	3 cut(s)	56, 120, 123
HpyAV	CCTTC	3 cut(s)	472, 550, 1076
HpyCH4III	ACNGT	3 cut(s)	191, 266, 917
HpyCH4IV	ACGT	3 cut(s)	54, 118, 274
HpyCH4V	TGCA	3 cut(s)	838, 1013, 1146
HpyF10VI	GCNNNNNNNGC	2 cut(s)	457, 557
HpySE526I	ACGT	3 cut(s)	54, 118, 274
Hsp92I	GRCGYC	1 cut(s)	118
Hsp92II	CATG	6 cut(s)	215, 602, 1013, 1034, 1130, 1146
HspAI	GCGC	1 cut(s)	292
Ksp22I	TGATCA	1 cut(s)	142
Kzo9I	GATC	7 cut(s)	67, 142, 178, 204, 283, 652, 1123
LmnI	GCTCC	1 cut(s)	448
Lsp1109I	GCAGC	3 cut(s)	365, 942, 1025
MaeI	CTAG	1 cut(s)	222
MaeII	ACGT	3 cut(s)	54, 118, 274
MaeIII	GTNAC	3 cut(s)	487, 638, 743
MalI	GATC	7 cut(s)	69, 144, 180, 206, 285, 654, 1125
MboI	GATC	7 cut(s)	67, 142, 178, 204, 283, 652, 1123
MboII	GAAGA	6 cut(s)	116, 368, 874, 944, 1046, 1133
MfeI	CAATTG	1 cut(s)	771
MflI	RGATCY	2 cut(s)	204, 652
MhlI	GDGCHC	2 cut(s)	453, 462
MluCI	AATT	8 cut(s)	279, 305, 513, 771, 783, 903, 975, 1042
MlyI	GAGTC	2 cut(s)	68, 104
MseI	TTAA	4 cut(s)	312, 516, 705, 927
MslI	CAYNNNNRTG	1 cut(s)	216
MspI	CCGG	1 cut(s)	1052
MspR9I	CCNGG	2 cut(s)	375, 386
MunI	CAATTG	1 cut(s)	771
MvaI	CCWGG	2 cut(s)	375, 386
MwoI	GCNNNNNNNGC	2 cut(s)	457, 557
NdeII	GATC	7 cut(s)	67, 142, 178, 204, 283, 652, 1123
NlaIII	CATG	6 cut(s)	215, 602, 1013, 1034, 1130, 1146
NmuCI	GTSAC	2 cut(s)	638, 743
NspI	RCATGY	1 cut(s)	1146
NspV	TTCGAA	1 cut(s)	991
PaeR7I	CTCGAG	1 cut(s)	671
PcsI	WCGNNNNNNNCGW	2 cut(s)	57, 187
PfeI	GAWTC	6 cut(s)	367, 533, 587, 663, 935, 1065
PflFI	GACNNNGTC	1 cut(s)	120
PkrI	GCNGC	3 cut(s)	380, 957, 1015
PleI	GAGTC	2 cut(s)	68, 104
PpsI	GAGTC	2 cut(s)	68, 104
Ppu21I	YACGTR	1 cut(s)	275
PshAI	GACNNNNGTC	1 cut(s)	253
Psp6I	CCWGG	2 cut(s)	373, 384
PspGI	CCWGG	2 cut(s)	373, 384
PspXI	VCTCGAGB	1 cut(s)	671
PsuI	RGATCY	2 cut(s)	204, 652
PsyI	GACNNNGTC	1 cut(s)	120
RsaI	GTAC	4 cut(s)	188, 273, 1025, 1091
RsaNI	GTAC	4 cut(s)	187, 272, 1024, 1090
RseI	CAYNNNNRTG	1 cut(s)	216
SaqAI	TTAA	4 cut(s)	312, 516, 705, 927
SatI	GCNGC	3 cut(s)	379, 956, 1014
Sau3AI	GATC	7 cut(s)	67, 142, 178, 204, 283, 652, 1123
SchI	GAGTC	2 cut(s)	68, 104
ScrFI	CCNGG	2 cut(s)	375, 386
SduI	GDGCHC	2 cut(s)	453, 462
Sfr274I	CTCGAG	1 cut(s)	671
SfuI	TTCGAA	1 cut(s)	991
SlaI	CTCGAG	1 cut(s)	671
SmiMI	CAYNNNNRTG	1 cut(s)	216
SmlI	CTYRAG	1 cut(s)	671
SmoI	CTYRAG	1 cut(s)	671
Sse9I	AATT	8 cut(s)	279, 305, 513, 771, 783, 903, 975, 1042
SsiI	CCGC	4 cut(s)	18, 91, 97, 413
SspMI	CTAG	1 cut(s)	222
StyD4I	CCNGG	2 cut(s)	373, 384
StyI	CCWWGG	1 cut(s)	1073
TaaI	ACNGT	3 cut(s)	191, 266, 917
TaiI	ACGT	3 cut(s)	57, 121, 277
TaqI	TCGA	8 cut(s)	51, 153, 165, 247, 672, 874, 991, 1104
TasI	AATT	8 cut(s)	279, 305, 513, 771, 783, 903, 975, 1042
TfiI	GAWTC	6 cut(s)	367, 533, 587, 663, 935, 1065
Tru1I	TTAA	4 cut(s)	312, 516, 705, 927
Tru9I	TTAA	4 cut(s)	312, 516, 705, 927
TscAI	CASTG	1 cut(s)	631
TseFI	GTSAC	2 cut(s)	638, 743
TseI	GCWGC	3 cut(s)	378, 955, 1013
Tsp45I	GTSAC	2 cut(s)	638, 743
TspDTI	ATGAA	6 cut(s)	519, 525, 726, 924, 945, 1047
TspGWI	ACGGA	2 cut(s)	75, 794
TspRI	CASTG	1 cut(s)	631
Tth111I	GACNNNGTC	1 cut(s)	120
XapI	RAATTY	2 cut(s)	305, 903
XceI	RCATGY	1 cut(s)	1146
XhoI	CTCGAG	1 cut(s)	671
XspI	CTAG	1 cut(s)	222
ZraI	GACGTC	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.