Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0004252

Physical Location & Seq

Genomic Coordinates Reverse (-)

11805249 .. 11807139

Gene Structure 1891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG076500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGACAACAGAGGACGGCGGTGTATCAAAAAAGAGGAAAGCCGTTTCCTTCGACGTTCCCGAACCCGATCCCGACTCCTCCCCTCCGTCCCGCCACCGCCCCAGTAAAGACTCCCGACGTCTTCTTCCCGTCCCCACCGATGCTCATTTGTTCGACAACGAGATCGACTACACTACTGATCGCAAGTACCGTATTCCCGACTGGATATGGGATGACAATGCTAGAGGTAAAAAAGATGATAATCATCGACTATTGTTCTTGAACCGTAGGGTACGTGAAATTGATCTGAAGCGCTTACAAGTGAAATTTCTTAAAGAGGAAAAGATATTTCAAGATAAGAAACAGAAATGGGTTGAAGAATACTTGATTAATCAGCCTGGCTGCGACCAGGATGAGTTGAAAAAGAACTTGTTTGCGGAGGTATCTAAATGGGAAGCACGATACGAGGAGGAGCACTTTGAGCCCTTCTACAAAAAGAGATATGAGATTGTTACTGGAGGAGGATATGAAAAACCAATTAAAGACAAGGGACTGGATAAATTTTGGGTTTCTGCGTTGAAGGCAAATCAGATACTTGTTAGGCAGATTGAATCACCAGACCATGATTATCAGGCTCTCTGTCATATCACTGATATCAGGACGGAAATTGAATGGTATGATAAGAAAAGCTTGACAGAGAAACTTCTTTTAGTAAGGTTGCACAAAGGTTCGCAAGTCAAAGTTATAGAGAAGTGTCGAAGCTTCTTCAACTTCTTTGAAACAAAAATTTATGAACAGGGTTTTATCTTTAATGAAGAATCTGGTGAACTCAAAGGGCTGCTACCGATGGATTATATAATTGGTCTTGCTATTCGAAACCAAATCATTCCTCATGCAGCATTGTGGTACAAACATGAAGAGGAGAATTGTGTGCAGGATGATGAGACAATCATTCCTTGGGCAGAAGGGTGGTACGAATATGTAATCGATGATTGTAGGCCAGAAGATCATGCTGTCATTTTGACATGCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

337

Amino Acids

40.06

Weight (kDa)

5.61

Isoelectric Point (pI)

50.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	129 - 215	2.2e-09	Nucleosome assembly protein (NAP)
NAP	PF00956	214 - 298	1.1e-12	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004252)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0329211 RchiOBHm_Chr5g0026901
rosa_laevigata	RLG00000005131 RLG00000020175 RLG00000021041 RLG00000029910
rosa_multiflora	Rmu_sc0000203.1_g000002 Rmu_sc0004223.1_g000010 Rmu_sc0014333.1_g000006
rosa_roxburghii	Rroxscaffold_3G00271320 Rroxscaffold_3G00271330
rosa_rugosa	Rorug01G0076600 Rorug01G0076600 Rorug01G0076700 Rorug01G0076800 Rorug01G0076900 Rorug01G0077000 Rorug01G0077100 Rorug06G0447000
rosa_samantha	Rh1AG096000 Rh1AG096100 Rh1BG076500 Rh1BG076600 Rh1BG076800 Rh1BG076900 Rh1CG092800 Rh1DG099400 Rh5AG189400 Rh5CG206400 Rh5DG188600 Rh7BG050000
rosa_wichuraiana	Rw1G007440 Rw5G017220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	121
AciI	CCGC	4 cut(s)	18, 91, 97, 416
AclWI	GGATC	1 cut(s)	62
AcsI	RAATTY	3 cut(s)	305, 539, 765
AcuI	CTGAAG	1 cut(s)	308
AcyI	GRCGYC	1 cut(s)	118
AfaI	GTAC	4 cut(s)	188, 273, 887, 953
AfeI	AGCGCT	1 cut(s)	293
AgsI	TTSAA	9 cut(s)	262, 332, 356, 400, 559, 590, 650, 748, 758
AjnI	CCWGG	2 cut(s)	376, 387
AluBI	AGCT	2 cut(s)	669, 741
AluI	AGCT	2 cut(s)	669, 741
Alw21I	GWGCWC	1 cut(s)	456
Alw26I	GTCTC	1 cut(s)	917
AlwI	GGATC	1 cut(s)	62
Aor51HI	AGCGCT	1 cut(s)	293
AoxI	GGCC	1 cut(s)	977
ApeKI	GCWGC	3 cut(s)	381, 817, 875
ApoI	RAATTY	3 cut(s)	305, 539, 765
AseI	ATTAAT	1 cut(s)	369
AspLEI	GCGC	1 cut(s)	294
AsuHPI	GGTGA	2 cut(s)	585, 815
AsuII	TTCGAA	1 cut(s)	853
BanII	GRGCYC	1 cut(s)	465
BbsI	GAAGAC	1 cut(s)	113
Bbv12I	GWGCWC	1 cut(s)	456
BbvI	GCAGC	3 cut(s)	368, 804, 887
BccI	CCATC	1 cut(s)	820
BceAI	ACGGC	2 cut(s)	26, 31
BciT130I	CCWGG	2 cut(s)	378, 389
BcoDI	GTCTC	1 cut(s)	917
BfaI	CTAG	1 cut(s)	222
BfoI	RGCGCY	1 cut(s)	295
BisI	GCNGC	3 cut(s)	382, 818, 876
BlsI	GCNGC	3 cut(s)	383, 819, 877
Bme1390I	CCNGG	2 cut(s)	378, 389
BmrFI	CCNGG	2 cut(s)	378, 389
BmrI	ACTGGG	1 cut(s)	96
BmsI	GCATC	1 cut(s)	130
BmuI	ACTGGG	1 cut(s)	96
BpiI	GAAGAC	1 cut(s)	113
BpmI	CTGGAG	1 cut(s)	516
Bpu14I	TTCGAA	1 cut(s)	853
Bsa29I	ATCGAT	1 cut(s)	966
BsaAI	YACGTR	1 cut(s)	275
BsaBI	GATNNNNATC	2 cut(s)	240, 243
BsaHI	GRCGYC	1 cut(s)	118
BsaJI	CCNNGG	1 cut(s)	935
Bse1I	ACTGG	4 cut(s)	102, 206, 499, 537
Bse8I	GATNNNNATC	2 cut(s)	240, 243
BseBI	CCWGG	2 cut(s)	378, 389
BseCI	ATCGAT	1 cut(s)	966
BseDI	CCNNGG	1 cut(s)	935
BseGI	GGATG	3 cut(s)	217, 397, 922
BseJI	GATNNNNATC	2 cut(s)	240, 243
BseNI	ACTGG	4 cut(s)	102, 206, 499, 537
BseRI	GAGGAG	5 cut(s)	67, 461, 464, 513, 914
BseXI	GCAGC	3 cut(s)	368, 804, 887
BsgI	GTGCAG	1 cut(s)	932
BshFI	GGCC	1 cut(s)	979
BshVI	ATCGAT	1 cut(s)	966
BsiHKAI	GWGCWC	1 cut(s)	456
BslFI	GGGAC	3 cut(s)	73, 116, 543
BsmAI	GTCTC	1 cut(s)	917
BsmFI	GGGAC	3 cut(s)	73, 116, 543
BsnI	GGCC	1 cut(s)	979
Bsp119I	TTCGAA	1 cut(s)	853
Bsp1286I	GDGCHC	2 cut(s)	456, 465
Bsp143I	GATC	5 cut(s)	67, 162, 178, 283, 985
BspACI	CCGC	4 cut(s)	18, 91, 97, 416
BspANI	GGCC	1 cut(s)	979
BspDI	ATCGAT	1 cut(s)	966
BspPI	GGATC	1 cut(s)	62
BspT104I	TTCGAA	1 cut(s)	853
BsrI	ACTGG	4 cut(s)	102, 206, 499, 537
BssECI	CCNNGG	1 cut(s)	935
BssMI	GATC	5 cut(s)	67, 162, 178, 283, 985
BssNI	GRCGYC	1 cut(s)	118
BssT1I	CCWWGG	1 cut(s)	935
Bst2UI	CCWGG	2 cut(s)	378, 389
Bst4CI	ACNGT	2 cut(s)	191, 266
Bst6I	CTCTTC	1 cut(s)	891
BstACI	GRCGYC	1 cut(s)	118
BstBAI	YACGTR	1 cut(s)	275
BstBI	TTCGAA	1 cut(s)	853
BstF5I	GGATG	3 cut(s)	217, 397, 922
BstH2I	RGCGCY	1 cut(s)	295
BstHHI	GCGC	1 cut(s)	294
BstKTI	GATC	5 cut(s)	70, 165, 181, 286, 988
BstMAI	GTCTC	1 cut(s)	917
BstMBI	GATC	5 cut(s)	67, 162, 178, 283, 985
BstMWI	GCNNNNNNNGC	2 cut(s)	460, 560
BstNI	CCWGG	2 cut(s)	378, 389
BstNSI	RCATGY	1 cut(s)	1008
BstSCI	CCNGG	2 cut(s)	376, 387
BstV1I	GCAGC	3 cut(s)	368, 804, 887
BstV2I	GAAGAC	1 cut(s)	113
Bsu15I	ATCGAT	1 cut(s)	966
BsuRI	GGCC	1 cut(s)	979
BsuTUI	ATCGAT	1 cut(s)	966
BtsCI	GGATG	3 cut(s)	217, 397, 922
BtsIMutI	CAGTG	1 cut(s)	627
CfoI	GCGC	1 cut(s)	294
ClaI	ATCGAT	1 cut(s)	966
Csp6I	GTAC	4 cut(s)	187, 272, 886, 952
CviAII	CATG	5 cut(s)	602, 872, 893, 989, 1005
CviJI	RGCY	9 cut(s)	41, 376, 381, 463, 614, 669, 741, 817, 979
CviKI_1	RGCY	9 cut(s)	41, 376, 381, 463, 614, 669, 741, 817, 979
CviQI	GTAC	4 cut(s)	187, 272, 886, 952
DpnI	GATC	5 cut(s)	69, 164, 180, 285, 987
DpnII	GATC	5 cut(s)	67, 162, 178, 283, 985
Eam1104I	CTCTTC	1 cut(s)	891
EarI	CTCTTC	1 cut(s)	891
Eco130I	CCWWGG	1 cut(s)	935
Eco24I	GRGCYC	1 cut(s)	465
Eco32I	GATATC	1 cut(s)	634
Eco47III	AGCGCT	1 cut(s)	293
Eco57I	CTGAAG	1 cut(s)	308
EcoRII	CCWGG	2 cut(s)	376, 387
EcoRV	GATATC	1 cut(s)	634
EcoT14I	CCWWGG	1 cut(s)	935
EcoT38I	GRGCYC	1 cut(s)	465
ErhI	CCWWGG	1 cut(s)	935
FaeI	CATG	5 cut(s)	605, 875, 896, 992, 1008
FalI	AAGNNNNNCTT	2 cut(s)	653, 685
FaqI	GGGAC	3 cut(s)	73, 116, 543
FatI	CATG	5 cut(s)	601, 871, 892, 988, 1004
FauI	CCCGC	1 cut(s)	98
Fnu4HI	GCNGC	3 cut(s)	382, 818, 876
FokI	GGATG	3 cut(s)	224, 404, 929
FriOI	GRGCYC	1 cut(s)	465
Fsp4HI	GCNGC	3 cut(s)	382, 818, 876
FspBI	CTAG	1 cut(s)	222
GlaI	GCGC	1 cut(s)	293
GluI	GCNGC	3 cut(s)	382, 818, 876
GsuI	CTGGAG	1 cut(s)	516
HaeII	RGCGCY	1 cut(s)	295
HaeIII	GGCC	1 cut(s)	979
HhaI	GCGC	1 cut(s)	294
Hin1I	GRCGYC	1 cut(s)	118
Hin1II	CATG	5 cut(s)	605, 875, 896, 992, 1008
Hin6I	GCGC	1 cut(s)	292
HinP1I	GCGC	1 cut(s)	292
HindIII	AAGCTT	2 cut(s)	667, 739
HinfI	GANTC	4 cut(s)	74, 110, 590, 797
HphI	GGTGA	2 cut(s)	585, 815
Hpy166II	GTNNAC	1 cut(s)	806
Hpy188I	TCNGA	2 cut(s)	288, 570
Hpy188III	TCNNGA	7 cut(s)	59, 71, 114, 197, 259, 332, 637
Hpy8I	GTNNAC	1 cut(s)	806
Hpy99I	CGWCG	2 cut(s)	56, 120
HpyAV	CCTTC	4 cut(s)	58, 475, 553, 938
HpyCH4III	ACNGT	2 cut(s)	191, 266
HpyCH4IV	ACGT	3 cut(s)	54, 118, 274
HpyCH4V	TGCA	4 cut(s)	700, 875, 913, 1008
HpyF10VI	GCNNNNNNNGC	2 cut(s)	460, 560
HpySE526I	ACGT	3 cut(s)	54, 118, 274
Hsp92I	GRCGYC	1 cut(s)	118
Hsp92II	CATG	5 cut(s)	605, 875, 896, 992, 1008
HspAI	GCGC	1 cut(s)	292
Kzo9I	GATC	5 cut(s)	67, 162, 178, 283, 985
LmnI	GCTCC	1 cut(s)	451
Lsp1109I	GCAGC	3 cut(s)	368, 804, 887
LweI	GCATC	1 cut(s)	130
MaeI	CTAG	1 cut(s)	222
MaeII	ACGT	3 cut(s)	54, 118, 274
MaeIII	GTNAC	1 cut(s)	490
MalI	GATC	5 cut(s)	69, 164, 180, 285, 987
MboI	GATC	5 cut(s)	67, 162, 178, 283, 985
MboII	GAAGA	7 cut(s)	113, 116, 368, 736, 806, 908, 995
MhlI	GDGCHC	2 cut(s)	456, 465
MluCI	AATT	8 cut(s)	279, 305, 516, 539, 645, 765, 837, 904
MlyI	GAGTC	2 cut(s)	68, 104
MseI	TTAA	4 cut(s)	312, 369, 519, 789
MspR9I	CCNGG	2 cut(s)	378, 389
MvaI	CCWGG	2 cut(s)	378, 389
MwoI	GCNNNNNNNGC	2 cut(s)	460, 560
NdeII	GATC	5 cut(s)	67, 162, 178, 283, 985
NlaIII	CATG	5 cut(s)	605, 875, 896, 992, 1008
NspI	RCATGY	1 cut(s)	1008
NspV	TTCGAA	1 cut(s)	853
PcsI	WCGNNNNNNNCGW	2 cut(s)	57, 187
PfeI	GAWTC	2 cut(s)	590, 797
PkrI	GCNGC	3 cut(s)	383, 819, 877
PleI	GAGTC	2 cut(s)	68, 104
PpsI	GAGTC	2 cut(s)	68, 104
Ppu21I	YACGTR	1 cut(s)	275
PshBI	ATTAAT	1 cut(s)	369
Psp6I	CCWGG	2 cut(s)	376, 387
PspGI	CCWGG	2 cut(s)	376, 387
RsaI	GTAC	4 cut(s)	188, 273, 887, 953
RsaNI	GTAC	4 cut(s)	187, 272, 886, 952
SaqAI	TTAA	4 cut(s)	312, 369, 519, 789
SatI	GCNGC	3 cut(s)	382, 818, 876
Sau3AI	GATC	5 cut(s)	67, 162, 178, 283, 985
SchI	GAGTC	2 cut(s)	68, 104
ScrFI	CCNGG	2 cut(s)	378, 389
SduI	GDGCHC	2 cut(s)	456, 465
SetI	ASST	9 cut(s)	57, 121, 229, 277, 423, 671, 698, 709, 743
SfaNI	GCATC	1 cut(s)	130
SfuI	TTCGAA	1 cut(s)	853
Sse9I	AATT	8 cut(s)	279, 305, 516, 539, 645, 765, 837, 904
SsiI	CCGC	4 cut(s)	18, 91, 97, 416
SspMI	CTAG	1 cut(s)	222
StyD4I	CCNGG	2 cut(s)	376, 387
StyI	CCWWGG	1 cut(s)	935
TaaI	ACNGT	2 cut(s)	191, 266
TaiI	ACGT	3 cut(s)	57, 121, 277
TaqI	TCGA	7 cut(s)	51, 153, 165, 247, 736, 853, 966
TasI	AATT	8 cut(s)	279, 305, 516, 539, 645, 765, 837, 904
TfiI	GAWTC	2 cut(s)	590, 797
Tru1I	TTAA	4 cut(s)	312, 369, 519, 789
Tru9I	TTAA	4 cut(s)	312, 369, 519, 789
TscAI	CASTG	1 cut(s)	634
TseI	GCWGC	3 cut(s)	381, 817, 875
TspDTI	ATGAA	4 cut(s)	522, 786, 807, 909
TspGWI	ACGGA	2 cut(s)	75, 656
TspRI	CASTG	1 cut(s)	634
VspI	ATTAAT	1 cut(s)	369
XapI	RAATTY	3 cut(s)	305, 539, 765
XceI	RCATGY	1 cut(s)	1008
XspI	CTAG	1 cut(s)	222
ZraI	GACGTC	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.