Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0004252

Physical Location & Seq

Genomic Coordinates Reverse (-)

3276786 .. 3277320

Gene Structure 535 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG050000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGACGGTCCTCAGACCTCTAGGTAAACAAGATGATGGTCATCGAATATCTTTCTTGAACAAGGGGACACGTGATATCGATCTGAAGCGCTTACAAGTGAAATTACTTAAGGAGGAAAAGATATTTCAAGATAAGAAACAGAAATGGGTAGAAGAATACTTGAATCAGCCTGGCTGCGACCAGGATGAGTTGAAAAAGAACTTGTTTGCGGAGACATCTAAATGGGAAGCACAATACGAGAAGGAGCACTTTGAGCCCTTCTACAGAAAGAGATATGAGATTGTTACTGGAGGAAGATATGAAAAACCAATTACAGGTAGAGGCCCGCCCCTCACAAGTCAAGAGTCTTTAACTCTTGCACTAGACTTGAGAGTAATTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

127

Amino Acids

15.06

Weight (kDa)

8.59

Isoelectric Point (pI)

39.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004252)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0329211 RchiOBHm_Chr5g0026901
rosa_laevigata	RLG00000005131 RLG00000020175 RLG00000021041 RLG00000029910
rosa_multiflora	Rmu_sc0000203.1_g000002 Rmu_sc0004223.1_g000010 Rmu_sc0014333.1_g000006
rosa_roxburghii	Rroxscaffold_3G00271320 Rroxscaffold_3G00271330
rosa_rugosa	Rorug01G0076600 Rorug01G0076600 Rorug01G0076700 Rorug01G0076800 Rorug01G0076900 Rorug01G0077000 Rorug01G0077100 Rorug06G0447000
rosa_samantha	Rh1AG096000 Rh1AG096100 Rh1BG076500 Rh1BG076600 Rh1BG076800 Rh1BG076900 Rh1CG092800 Rh1DG099400 Rh5AG189400 Rh5CG206400 Rh5DG188600 Rh7BG050000
rosa_wichuraiana	Rw1G007440 Rw5G017220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	209, 326
AcuI	CTGAAG	1 cut(s)	104
AcvI	CACGTG	1 cut(s)	71
AfeI	AGCGCT	1 cut(s)	89
AfiI	CCNNNNNNNGG	1 cut(s)	314
AflII	CTTAAG	1 cut(s)	107
AflIII	ACRYGT	1 cut(s)	68
AgsI	TTSAA	4 cut(s)	58, 128, 163, 193
AjnI	CCWGG	2 cut(s)	169, 180
Alw21I	GWGCWC	1 cut(s)	249
Alw26I	GTCTC	1 cut(s)	206
Aor51HI	AGCGCT	1 cut(s)	89
AoxI	GGCC	1 cut(s)	322
ApeKI	GCWGC	1 cut(s)	174
AspLEI	GCGC	1 cut(s)	90
AspS9I	GGNCC	2 cut(s)	7, 323
AvaII	GGWCC	1 cut(s)	7
BanII	GRGCYC	1 cut(s)	258
BbrPI	CACGTG	1 cut(s)	71
Bbv12I	GWGCWC	1 cut(s)	249
BbvI	GCAGC	1 cut(s)	161
BccI	CCATC	1 cut(s)	29
BciT130I	CCWGG	2 cut(s)	171, 182
BcoDI	GTCTC	1 cut(s)	206
BfaI	CTAG	2 cut(s)	20, 362
BfmI	CTRYAG	1 cut(s)	262
BfoI	RGCGCY	1 cut(s)	91
BfrI	CTTAAG	1 cut(s)	107
BisI	GCNGC	1 cut(s)	175
BlsI	GCNGC	1 cut(s)	176
Bme1390I	CCNGG	2 cut(s)	171, 182
Bme18I	GGWCC	1 cut(s)	7
BmgT120I	GGNCC	2 cut(s)	7, 323
BmrFI	CCNGG	2 cut(s)	171, 182
BpmI	CTGGAG	1 cut(s)	309
Bsa29I	ATCGAT	1 cut(s)	78
BsaAI	YACGTR	1 cut(s)	71
BsaBI	GATNNNNATC	2 cut(s)	39, 78
Bsc4I	CCNNNNNNNGG	1 cut(s)	314
Bse1I	ACTGG	1 cut(s)	292
Bse8I	GATNNNNATC	2 cut(s)	39, 78
BseBI	CCWGG	2 cut(s)	171, 182
BseCI	ATCGAT	1 cut(s)	78
BseGI	GGATG	1 cut(s)	190
BseJI	GATNNNNATC	2 cut(s)	39, 78
BseLI	CCNNNNNNNGG	1 cut(s)	314
BseMII	CTCAG	1 cut(s)	25
BseNI	ACTGG	1 cut(s)	292
BseXI	GCAGC	1 cut(s)	161
BshFI	GGCC	1 cut(s)	324
BshVI	ATCGAT	1 cut(s)	78
BsiHKAI	GWGCWC	1 cut(s)	249
BslFI	GGGAC	1 cut(s)	79
BslI	CCNNNNNNNGG	1 cut(s)	314
BsmAI	GTCTC	1 cut(s)	206
BsmFI	GGGAC	1 cut(s)	79
BsnI	GGCC	1 cut(s)	324
Bsp1286I	GDGCHC	2 cut(s)	249, 258
Bsp143I	GATC	1 cut(s)	79
BspACI	CCGC	2 cut(s)	209, 326
BspANI	GGCC	1 cut(s)	324
BspCNI	CTCAG	1 cut(s)	24
BspDI	ATCGAT	1 cut(s)	78
BspTI	CTTAAG	1 cut(s)	107
BsrI	ACTGG	1 cut(s)	292
BssMI	GATC	1 cut(s)	79
Bst2UI	CCWGG	2 cut(s)	171, 182
Bst4CI	ACNGT	1 cut(s)	7
BstAFI	CTTAAG	1 cut(s)	107
BstBAI	YACGTR	1 cut(s)	71
BstC8I	GCNNGC	1 cut(s)	326
BstDEI	CTNAG	1 cut(s)	11
BstF5I	GGATG	1 cut(s)	190
BstH2I	RGCGCY	1 cut(s)	91
BstHHI	GCGC	1 cut(s)	90
BstKTI	GATC	1 cut(s)	82
BstMAI	GTCTC	1 cut(s)	206
BstMBI	GATC	1 cut(s)	79
BstMWI	GCNNNNNNNGC	1 cut(s)	253
BstNI	CCWGG	2 cut(s)	171, 182
BstSCI	CCNGG	2 cut(s)	169, 180
BstSFI	CTRYAG	1 cut(s)	262
BstV1I	GCAGC	1 cut(s)	161
Bsu15I	ATCGAT	1 cut(s)	78
BsuRI	GGCC	1 cut(s)	324
BsuTUI	ATCGAT	1 cut(s)	78
BtsCI	GGATG	1 cut(s)	190
Cac8I	GCNNGC	1 cut(s)	326
CfoI	GCGC	1 cut(s)	90
Cfr13I	GGNCC	2 cut(s)	7, 323
ClaI	ATCGAT	1 cut(s)	78
CviJI	RGCY	4 cut(s)	169, 174, 256, 324
CviKI_1	RGCY	4 cut(s)	169, 174, 256, 324
DdeI	CTNAG	1 cut(s)	11
DpnI	GATC	1 cut(s)	81
DpnII	GATC	1 cut(s)	79
Eco24I	GRGCYC	1 cut(s)	258
Eco32I	GATATC	1 cut(s)	76
Eco47I	GGWCC	1 cut(s)	7
Eco47III	AGCGCT	1 cut(s)	89
Eco57I	CTGAAG	1 cut(s)	104
Eco72I	CACGTG	1 cut(s)	71
EcoRII	CCWGG	2 cut(s)	169, 180
EcoRV	GATATC	1 cut(s)	76
EcoT38I	GRGCYC	1 cut(s)	258
FaiI	YATR	2 cut(s)	276, 300
FalI	AAGNNNNNCTT	2 cut(s)	233, 265
FaqI	GGGAC	1 cut(s)	79
FauI	CCCGC	1 cut(s)	333
Fnu4HI	GCNGC	1 cut(s)	175
FokI	GGATG	1 cut(s)	197
FriOI	GRGCYC	1 cut(s)	258
Fsp4HI	GCNGC	1 cut(s)	175
FspBI	CTAG	2 cut(s)	20, 362
GlaI	GCGC	1 cut(s)	89
GluI	GCNGC	1 cut(s)	175
GsuI	CTGGAG	1 cut(s)	309
HaeII	RGCGCY	1 cut(s)	91
HaeIII	GGCC	1 cut(s)	324
HhaI	GCGC	1 cut(s)	90
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
HinfI	GANTC	2 cut(s)	163, 344
Hpy166II	GTNNAC	1 cut(s)	26
Hpy188I	TCNGA	2 cut(s)	14, 84
Hpy188III	TCNNGA	3 cut(s)	55, 128, 341
Hpy8I	GTNNAC	1 cut(s)	26
HpyAV	CCTTC	2 cut(s)	235, 268
HpyCH4III	ACNGT	1 cut(s)	7
HpyCH4IV	ACGT	1 cut(s)	70
HpyCH4V	TGCA	1 cut(s)	359
HpyF10VI	GCNNNNNNNGC	1 cut(s)	253
HpyF3I	CTNAG	1 cut(s)	11
HpySE526I	ACGT	1 cut(s)	70
HspAI	GCGC	1 cut(s)	88
Kzo9I	GATC	1 cut(s)	79
LmnI	GCTCC	1 cut(s)	244
LpnPI	CCDG	6 cut(s)	156, 167, 183, 194, 273, 300
Lsp1109I	GCAGC	1 cut(s)	161
MaeI	CTAG	2 cut(s)	20, 362
MaeII	ACGT	1 cut(s)	70
MaeIII	GTNAC	1 cut(s)	283
MalI	GATC	1 cut(s)	81
MboI	GATC	1 cut(s)	79
MboII	GAAGA	2 cut(s)	164, 306
MhlI	GDGCHC	2 cut(s)	249, 258
MluCI	AATT	3 cut(s)	101, 309, 375
MlyI	GAGTC	1 cut(s)	353
MnlI	CCTC	6 cut(s)	20, 27, 106, 284, 314, 341
MseI	TTAA	2 cut(s)	108, 350
MslI	CAYNNNNRTG	1 cut(s)	220
MspCI	CTTAAG	1 cut(s)	107
MspR9I	CCNGG	2 cut(s)	171, 182
MvaI	CCWGG	2 cut(s)	171, 182
MwoI	GCNNNNNNNGC	1 cut(s)	253
NdeII	GATC	1 cut(s)	79
PfeI	GAWTC	1 cut(s)	163
PkrI	GCNGC	1 cut(s)	176
PleI	GAGTC	1 cut(s)	352
PmaCI	CACGTG	1 cut(s)	71
PmlI	CACGTG	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	352
Ppu21I	YACGTR	1 cut(s)	71
Psp6I	CCWGG	2 cut(s)	169, 180
PspCI	CACGTG	1 cut(s)	71
PspGI	CCWGG	2 cut(s)	169, 180
PspPI	GGNCC	2 cut(s)	7, 323
RseI	CAYNNNNRTG	1 cut(s)	220
SaqAI	TTAA	2 cut(s)	108, 350
SatI	GCNGC	1 cut(s)	175
Sau3AI	GATC	1 cut(s)	79
Sau96I	GGNCC	2 cut(s)	7, 323
SchI	GAGTC	1 cut(s)	353
ScrFI	CCNGG	2 cut(s)	171, 182
SduI	GDGCHC	2 cut(s)	249, 258
SetI	ASST	4 cut(s)	19, 25, 73, 319
SfcI	CTRYAG	1 cut(s)	262
SinI	GGWCC	1 cut(s)	7
SmiMI	CAYNNNNRTG	1 cut(s)	220
SmlI	CTYRAG	2 cut(s)	107, 367
SmoI	CTYRAG	2 cut(s)	107, 367
Sse9I	AATT	3 cut(s)	101, 309, 375
SsiI	CCGC	2 cut(s)	209, 326
SspMI	CTAG	2 cut(s)	20, 362
StyD4I	CCNGG	2 cut(s)	169, 180
TaaI	ACNGT	1 cut(s)	7
TaiI	ACGT	1 cut(s)	73
TaqI	TCGA	2 cut(s)	43, 78
TasI	AATT	3 cut(s)	101, 309, 375
TfiI	GAWTC	1 cut(s)	163
Tru1I	TTAA	2 cut(s)	108, 350
Tru9I	TTAA	2 cut(s)	108, 350
TseI	GCWGC	1 cut(s)	174
TspDTI	ATGAA	1 cut(s)	315
Vha464I	CTTAAG	1 cut(s)	107
VpaK11BI	GGWCC	1 cut(s)	7
XspI	CTAG	2 cut(s)	20, 362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.