Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0004252

Physical Location & Seq

Genomic Coordinates Reverse (-)

16808614 .. 16809661

Gene Structure 1048 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG096100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGACAACAGAGGACGGCGGTGTATCAAAAAAGAGGAAAGCCGTTTCGTTCGACGTTCCCGAACCCGAACCCGAACCCGATCCCGACTCCTCCCCTCCGTCCCGCCACGGTCCCAGTAAAGACTCCCGACGTCTTCTTCCCGTCCCCACCGATGATCATTTGTTCGACAACGAGATCGACTATACTACTGATCGCAAGTACCGTATTCCCGACTGGATCTGGCATGACAATGCTAGAGGTAAAAAAGATGATCATCATCGACTATTGTTCTTGAACCGTAGGGTACGTGAAATTGATCTGAAGCGCTTACAAGTGAAATTTCTTAAAGAGGAAAAGACATTTCAAGATAAGAAACAGAAATGGGTTGAAGAATACTTGAATCAGCCTGGCTGCGACCAGGATGAGTTGAAAAAGAACTTGTTTGCGGAGGTATCTAAATGGGAAGCACGATACGAGGAGGAGCACTTTGAGCCCTTCTACAAAAAGAGATATGAGATTGTTACTGGAGGAGGATATGAAAAACCAATTAAAGACAAGGGACTGGATAGATTTTGGGTTTCTGCGTTGATGGCAAATCAGATAGTTGTTAGGCAGATTGAATCACCAGACCATGATTATCAGGCTCTCTGTCATCTCACTGATATCAGGTGTCACAGGATAAAAGATCCGAGAGGATTCAAGCTCGAGTTTCTCTTTTCTCCTGATAATCCTTTTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

239

Amino Acids

28.52

Weight (kDa)

6.33

Isoelectric Point (pI)

53.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	132 - 239	5.8e-17	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004252)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0329211 RchiOBHm_Chr5g0026901
rosa_laevigata	RLG00000005131 RLG00000020175 RLG00000021041 RLG00000029910
rosa_multiflora	Rmu_sc0000203.1_g000002 Rmu_sc0004223.1_g000010 Rmu_sc0014333.1_g000006
rosa_roxburghii	Rroxscaffold_3G00271320 Rroxscaffold_3G00271330
rosa_rugosa	Rorug01G0076600 Rorug01G0076600 Rorug01G0076700 Rorug01G0076800 Rorug01G0076900 Rorug01G0077000 Rorug01G0077100 Rorug06G0447000
rosa_samantha	Rh1AG096000 Rh1AG096100 Rh1BG076500 Rh1BG076600 Rh1BG076800 Rh1BG076900 Rh1CG092800 Rh1DG099400 Rh5AG189400 Rh5CG206400 Rh5DG188600 Rh7BG050000
rosa_wichuraiana	Rw1G007440 Rw5G017220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	133
AciI	CCGC	3 cut(s)	18, 103, 425
AclWI	GGATC	3 cut(s)	74, 224, 659
AcsI	RAATTY	1 cut(s)	317
AcuI	CTGAAG	1 cut(s)	320
AcyI	GRCGYC	1 cut(s)	130
AfaI	GTAC	2 cut(s)	200, 285
AfeI	AGCGCT	1 cut(s)	305
AgsI	TTSAA	7 cut(s)	274, 344, 368, 379, 409, 599, 679
AjnI	CCWGG	2 cut(s)	385, 396
AluBI	AGCT	1 cut(s)	682
AluI	AGCT	1 cut(s)	682
Alw21I	GWGCWC	1 cut(s)	465
AlwI	GGATC	3 cut(s)	74, 224, 659
Ama87I	CYCGRG	1 cut(s)	683
Aor51HI	AGCGCT	1 cut(s)	305
ApeKI	GCWGC	1 cut(s)	390
ApoI	RAATTY	1 cut(s)	317
AspLEI	GCGC	1 cut(s)	306
AspS9I	GGNCC	1 cut(s)	110
AsuHPI	GGTGA	1 cut(s)	594
AvaI	CYCGRG	1 cut(s)	683
AvaII	GGWCC	1 cut(s)	110
BanII	GRGCYC	1 cut(s)	474
BbsI	GAAGAC	1 cut(s)	125
Bbv12I	GWGCWC	1 cut(s)	465
BbvI	GCAGC	1 cut(s)	377
BccI	CCATC	1 cut(s)	562
BceAI	ACGGC	2 cut(s)	26, 31
BciT130I	CCWGG	2 cut(s)	387, 398
BclI	TGATCA	2 cut(s)	154, 250
BfaI	CTAG	1 cut(s)	234
BfoI	RGCGCY	1 cut(s)	307
BisI	GCNGC	1 cut(s)	391
BlsI	GCNGC	1 cut(s)	392
Bme1390I	CCNGG	2 cut(s)	387, 398
Bme18I	GGWCC	1 cut(s)	110
BmeT110I	CYCGRG	1 cut(s)	683
BmgT120I	GGNCC	1 cut(s)	110
BmiI	GGNNCC	1 cut(s)	112
BmrFI	CCNGG	2 cut(s)	387, 398
BmrI	ACTGGG	1 cut(s)	108
BmuI	ACTGGG	1 cut(s)	108
BpiI	GAAGAC	1 cut(s)	125
BpmI	CTGGAG	1 cut(s)	525
BsaAI	YACGTR	1 cut(s)	287
BsaBI	GATNNNNATC	2 cut(s)	252, 255
BsaHI	GRCGYC	1 cut(s)	130
BsaJI	CCNNGG	1 cut(s)	106
Bse1I	ACTGG	4 cut(s)	114, 218, 508, 546
Bse8I	GATNNNNATC	2 cut(s)	252, 255
BseBI	CCWGG	2 cut(s)	387, 398
BseDI	CCNNGG	1 cut(s)	106
BseGI	GGATG	1 cut(s)	406
BseJI	GATNNNNATC	2 cut(s)	252, 255
BseNI	ACTGG	4 cut(s)	114, 218, 508, 546
BseRI	GAGGAG	4 cut(s)	79, 470, 473, 522
BseXI	GCAGC	1 cut(s)	377
BsiHKAI	GWGCWC	1 cut(s)	465
BsiHKCI	CYCGRG	1 cut(s)	683
BslFI	GGGAC	4 cut(s)	85, 96, 128, 552
BsmFI	GGGAC	4 cut(s)	85, 96, 128, 552
BsoBI	CYCGRG	1 cut(s)	683
Bsp1286I	GDGCHC	2 cut(s)	465, 474
Bsp143I	GATC	8 cut(s)	79, 154, 174, 190, 216, 250, 295, 664
BspACI	CCGC	3 cut(s)	18, 103, 425
BspLI	GGNNCC	1 cut(s)	112
BspPI	GGATC	3 cut(s)	74, 224, 659
BsrI	ACTGG	4 cut(s)	114, 218, 508, 546
BssECI	CCNNGG	1 cut(s)	106
BssMI	GATC	8 cut(s)	79, 154, 174, 190, 216, 250, 295, 664
BssNI	GRCGYC	1 cut(s)	130
Bst2UI	CCWGG	2 cut(s)	387, 398
Bst4CI	ACNGT	3 cut(s)	110, 203, 278
BstACI	GRCGYC	1 cut(s)	130
BstBAI	YACGTR	1 cut(s)	287
BstDSI	CCRYGG	1 cut(s)	106
BstF5I	GGATG	1 cut(s)	406
BstH2I	RGCGCY	1 cut(s)	307
BstHHI	GCGC	1 cut(s)	306
BstKTI	GATC	8 cut(s)	82, 157, 177, 193, 219, 253, 298, 667
BstMBI	GATC	8 cut(s)	79, 154, 174, 190, 216, 250, 295, 664
BstMWI	GCNNNNNNNGC	2 cut(s)	469, 569
BstNI	CCWGG	2 cut(s)	387, 398
BstSCI	CCNGG	2 cut(s)	385, 396
BstV1I	GCAGC	1 cut(s)	377
BstV2I	GAAGAC	1 cut(s)	125
BstX2I	RGATCY	2 cut(s)	216, 664
BstYI	RGATCY	2 cut(s)	216, 664
BtgI	CCRYGG	1 cut(s)	106
BtsCI	GGATG	1 cut(s)	406
BtsIMutI	CAGTG	1 cut(s)	636
CfoI	GCGC	1 cut(s)	306
Cfr13I	GGNCC	1 cut(s)	110
Csp6I	GTAC	2 cut(s)	199, 284
CviAII	CATG	2 cut(s)	224, 611
CviJI	RGCY	6 cut(s)	41, 385, 390, 472, 623, 682
CviKI_1	RGCY	6 cut(s)	41, 385, 390, 472, 623, 682
CviQI	GTAC	2 cut(s)	199, 284
DpnI	GATC	8 cut(s)	81, 156, 176, 192, 218, 252, 297, 666
DpnII	GATC	8 cut(s)	79, 154, 174, 190, 216, 250, 295, 664
Eco24I	GRGCYC	1 cut(s)	474
Eco32I	GATATC	1 cut(s)	643
Eco47I	GGWCC	1 cut(s)	110
Eco47III	AGCGCT	1 cut(s)	305
Eco57I	CTGAAG	1 cut(s)	320
Eco88I	CYCGRG	1 cut(s)	683
EcoRII	CCWGG	2 cut(s)	385, 396
EcoRV	GATATC	1 cut(s)	643
EcoT38I	GRGCYC	1 cut(s)	474
FaeI	CATG	2 cut(s)	227, 614
FaiI	YATR	5 cut(s)	183, 225, 492, 516, 612
FaqI	GGGAC	4 cut(s)	85, 96, 128, 552
FatI	CATG	2 cut(s)	223, 610
FauI	CCCGC	1 cut(s)	110
FbaI	TGATCA	2 cut(s)	154, 250
Fnu4HI	GCNGC	1 cut(s)	391
FokI	GGATG	1 cut(s)	413
FriOI	GRGCYC	1 cut(s)	474
Fsp4HI	GCNGC	1 cut(s)	391
FspBI	CTAG	1 cut(s)	234
GlaI	GCGC	1 cut(s)	305
GluI	GCNGC	1 cut(s)	391
GsuI	CTGGAG	1 cut(s)	525
HaeII	RGCGCY	1 cut(s)	307
HhaI	GCGC	1 cut(s)	306
Hin1I	GRCGYC	1 cut(s)	130
Hin1II	CATG	2 cut(s)	227, 614
Hin6I	GCGC	1 cut(s)	304
HinP1I	GCGC	1 cut(s)	304
HinfI	GANTC	5 cut(s)	86, 122, 379, 599, 675
HphI	GGTGA	1 cut(s)	594
Hpy188I	TCNGA	3 cut(s)	300, 579, 669
Hpy188III	TCNNGA	7 cut(s)	59, 83, 126, 209, 271, 344, 701
Hpy99I	CGWCG	2 cut(s)	56, 132
HpyAV	CCTTC	1 cut(s)	484
HpyCH4III	ACNGT	3 cut(s)	110, 203, 278
HpyCH4IV	ACGT	3 cut(s)	54, 130, 286
HpyF10VI	GCNNNNNNNGC	2 cut(s)	469, 569
HpySE526I	ACGT	3 cut(s)	54, 130, 286
Hsp92I	GRCGYC	1 cut(s)	130
Hsp92II	CATG	2 cut(s)	227, 614
HspAI	GCGC	1 cut(s)	304
Ksp22I	TGATCA	2 cut(s)	154, 250
Kzo9I	GATC	8 cut(s)	79, 154, 174, 190, 216, 250, 295, 664
LmnI	GCTCC	1 cut(s)	460
Lsp1109I	GCAGC	1 cut(s)	377
MaeI	CTAG	1 cut(s)	234
MaeII	ACGT	3 cut(s)	54, 130, 286
MaeIII	GTNAC	2 cut(s)	499, 650
MalI	GATC	8 cut(s)	81, 156, 176, 192, 218, 252, 297, 666
MboI	GATC	8 cut(s)	79, 154, 174, 190, 216, 250, 295, 664
MboII	GAAGA	3 cut(s)	125, 128, 380
MflI	RGATCY	2 cut(s)	216, 664
MhlI	GDGCHC	2 cut(s)	465, 474
MluCI	AATT	3 cut(s)	291, 317, 525
MlyI	GAGTC	2 cut(s)	80, 116
MseI	TTAA	3 cut(s)	324, 528, 718
MslI	CAYNNNNRTG	1 cut(s)	228
MspR9I	CCNGG	2 cut(s)	387, 398
MvaI	CCWGG	2 cut(s)	387, 398
MwoI	GCNNNNNNNGC	2 cut(s)	469, 569
NdeII	GATC	8 cut(s)	79, 154, 174, 190, 216, 250, 295, 664
NlaIII	CATG	2 cut(s)	227, 614
NlaIV	GGNNCC	1 cut(s)	112
NmuCI	GTSAC	1 cut(s)	650
PaeR7I	CTCGAG	1 cut(s)	683
PcsI	WCGNNNNNNNCGW	2 cut(s)	57, 199
PfeI	GAWTC	3 cut(s)	379, 599, 675
PkrI	GCNGC	1 cut(s)	392
PleI	GAGTC	2 cut(s)	80, 116
PpsI	GAGTC	2 cut(s)	80, 116
Ppu21I	YACGTR	1 cut(s)	287
Psp6I	CCWGG	2 cut(s)	385, 396
PspGI	CCWGG	2 cut(s)	385, 396
PspN4I	GGNNCC	1 cut(s)	112
PspPI	GGNCC	1 cut(s)	110
PspXI	VCTCGAGB	1 cut(s)	683
PsuI	RGATCY	2 cut(s)	216, 664
RsaI	GTAC	2 cut(s)	200, 285
RsaNI	GTAC	2 cut(s)	199, 284
RseI	CAYNNNNRTG	1 cut(s)	228
SaqAI	TTAA	3 cut(s)	324, 528, 718
SatI	GCNGC	1 cut(s)	391
Sau3AI	GATC	8 cut(s)	79, 154, 174, 190, 216, 250, 295, 664
Sau96I	GGNCC	1 cut(s)	110
SchI	GAGTC	2 cut(s)	80, 116
ScrFI	CCNGG	2 cut(s)	387, 398
SduI	GDGCHC	2 cut(s)	465, 474
SetI	ASST	7 cut(s)	57, 133, 241, 289, 432, 650, 684
Sfr274I	CTCGAG	1 cut(s)	683
SinI	GGWCC	1 cut(s)	110
SlaI	CTCGAG	1 cut(s)	683
SmiMI	CAYNNNNRTG	1 cut(s)	228
SmlI	CTYRAG	1 cut(s)	683
SmoI	CTYRAG	1 cut(s)	683
Sse9I	AATT	3 cut(s)	291, 317, 525
SsiI	CCGC	3 cut(s)	18, 103, 425
SspMI	CTAG	1 cut(s)	234
StyD4I	CCNGG	2 cut(s)	385, 396
TaaI	ACNGT	3 cut(s)	110, 203, 278
TaiI	ACGT	3 cut(s)	57, 133, 289
TaqI	TCGA	5 cut(s)	51, 165, 177, 259, 684
TasI	AATT	3 cut(s)	291, 317, 525
TfiI	GAWTC	3 cut(s)	379, 599, 675
Tru1I	TTAA	3 cut(s)	324, 528, 718
Tru9I	TTAA	3 cut(s)	324, 528, 718
TscAI	CASTG	1 cut(s)	643
TseFI	GTSAC	1 cut(s)	650
TseI	GCWGC	1 cut(s)	390
Tsp45I	GTSAC	1 cut(s)	650
TspDTI	ATGAA	1 cut(s)	531
TspGWI	ACGGA	1 cut(s)	87
TspRI	CASTG	1 cut(s)	643
VpaK11BI	GGWCC	1 cut(s)	110
XapI	RAATTY	1 cut(s)	317
XhoI	CTCGAG	1 cut(s)	683
XspI	CTAG	1 cut(s)	234
ZraI	GACGTC	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.