Rroxscaffold_3G00271330

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0004252
Physical Location & Seq
Forward (+)
63697304 .. 63701535
4232 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00271330.1

Sequence Viewer

Length: 333 bp
ATGCCCATGTATTCATCTATTGGTTTTGAAAATGACATGCTGGTGTATGTGATCTGTAGCCTTGCTATTCGAAACGAAATCATTCCTCATGCAGCATTGTGGTACAAACGGGAAGAGGAGCATTGTGTGCAAGATGATGAGACAATCATTCCTTGGGCAGAAGGGTGGTACGAATTTGTAATGGATGATTGTAGGCCGGATGAGCATGCTGTCATTTTGTCATGCGCAGTTAATCGGTTTCTTAGTGCTGTGACTATATTTCCCGAAGGAATAAATGGGAGGAAGCACATGTACATTCTTGACCGAATTACCAAGTCCGCATTGCAGACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.78

Weight (kDa)

4.79

Isoelectric Point (pI)

40.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 226
AciI CCGC 1 cut(s) 318
AcsI RAATTY 1 cut(s) 173
AfaI GTAC 3 cut(s) 104, 170, 293
AflIII ACRYGT 1 cut(s) 288
AgsI TTSAA 1 cut(s) 29
Alw26I GTCTC 1 cut(s) 134
AoxI GGCC 1 cut(s) 194
ApeKI GCWGC 1 cut(s) 92
ApoI RAATTY 1 cut(s) 173
Asp700I GAANNNNTTC 1 cut(s) 81
AspLEI GCGC 1 cut(s) 227
AsuII TTCGAA 1 cut(s) 70
BarI GAAGNNNNNNTAC 2 cut(s) 275, 307
BbvI GCAGC 1 cut(s) 104
BcoDI GTCTC 1 cut(s) 134
BfmI CTRYAG 1 cut(s) 55
BisI GCNGC 1 cut(s) 93
BlsI GCNGC 1 cut(s) 94
Bpu14I TTCGAA 1 cut(s) 70
BsaJI CCNNGG 1 cut(s) 152
Bse3DI GCAATG 1 cut(s) 320
BseDI CCNNGG 1 cut(s) 152
BseGI GGATG 2 cut(s) 190, 205
BseMI GCAATG 1 cut(s) 320
BseRI GAGGAG 1 cut(s) 131
BseXI GCAGC 1 cut(s) 104
BshFI GGCC 1 cut(s) 196
BsiSI CCGG 1 cut(s) 197
BsmAI GTCTC 1 cut(s) 134
BsnI GGCC 1 cut(s) 196
Bsp119I TTCGAA 1 cut(s) 70
Bsp1407I TGTACA 1 cut(s) 291
Bsp143I GATC 1 cut(s) 51
BspACI CCGC 1 cut(s) 318
BspANI GGCC 1 cut(s) 196
BspT104I TTCGAA 1 cut(s) 70
BsrDI GCAATG 1 cut(s) 320
BsrGI TGTACA 1 cut(s) 291
BssECI CCNNGG 1 cut(s) 152
BssMI GATC 1 cut(s) 51
BssT1I CCWWGG 1 cut(s) 152
Bst6I CTCTTC 1 cut(s) 108
BstAPI GCANNNNNTGC 1 cut(s) 127
BstAUI TGTACA 1 cut(s) 291
BstBI TTCGAA 1 cut(s) 70
BstC8I GCNNGC 1 cut(s) 207
BstDEI CTNAG 1 cut(s) 242
BstF5I GGATG 2 cut(s) 190, 205
BstHHI GCGC 1 cut(s) 227
BstKTI GATC 1 cut(s) 54
BstMAI GTCTC 1 cut(s) 134
BstMBI GATC 1 cut(s) 51
BstMWI GCNNNNNNNGC 2 cut(s) 127, 202
BstNSI RCATGY 3 cut(s) 40, 209, 292
BstSFI CTRYAG 1 cut(s) 55
BstV1I GCAGC 1 cut(s) 104
BsuRI GGCC 1 cut(s) 196
BtsCI GGATG 2 cut(s) 190, 205
Cac8I GCNNGC 1 cut(s) 207
CfoI GCGC 1 cut(s) 227
Csp6I GTAC 3 cut(s) 103, 169, 292
CviAII CATG 6 cut(s) 7, 37, 89, 206, 222, 289
CviJI RGCY 2 cut(s) 60, 196
CviKI_1 RGCY 2 cut(s) 60, 196
CviQI GTAC 3 cut(s) 103, 169, 292
DdeI CTNAG 1 cut(s) 242
DpnI GATC 1 cut(s) 53
DpnII GATC 1 cut(s) 51
Eam1104I CTCTTC 1 cut(s) 108
EarI CTCTTC 1 cut(s) 108
Eco130I CCWWGG 1 cut(s) 152
EcoT14I CCWWGG 1 cut(s) 152
ErhI CCWWGG 1 cut(s) 152
FaeI CATG 6 cut(s) 10, 40, 92, 209, 225, 292
FaiI YATR 9 cut(s) 8, 38, 48, 90, 207, 223, 257, 290, 331
FatI CATG 6 cut(s) 6, 36, 88, 205, 221, 288
Fnu4HI GCNGC 1 cut(s) 93
FokI GGATG 2 cut(s) 197, 212
Fsp4HI GCNGC 1 cut(s) 93
FspI TGCGCA 1 cut(s) 226
GlaI GCGC 1 cut(s) 226
GluI GCNGC 1 cut(s) 93
HaeIII GGCC 1 cut(s) 196
HapII CCGG 1 cut(s) 197
HhaI GCGC 1 cut(s) 227
Hin1II CATG 6 cut(s) 10, 40, 92, 209, 225, 292
Hin6I GCGC 1 cut(s) 225
HinP1I GCGC 1 cut(s) 225
HpaII CCGG 1 cut(s) 197
Hpy188III TCNNGA 2 cut(s) 263, 299
HpyAV CCTTC 2 cut(s) 155, 260
HpyCH4V TGCA 3 cut(s) 92, 130, 325
HpyF10VI GCNNNNNNNGC 2 cut(s) 127, 202
HpyF3I CTNAG 1 cut(s) 242
Hsp92II CATG 6 cut(s) 10, 40, 92, 209, 225, 292
HspAI GCGC 1 cut(s) 225
Kzo9I GATC 1 cut(s) 51
LmnI GCTCC 1 cut(s) 118
LpnPI CCDG 2 cut(s) 26, 210
Lsp1109I GCAGC 1 cut(s) 104
MaeIII GTNAC 1 cut(s) 250
MalI GATC 1 cut(s) 53
MboI GATC 1 cut(s) 51
MboII GAAGA 1 cut(s) 125
MluCI AATT 2 cut(s) 173, 306
MnlI CCTC 3 cut(s) 96, 109, 273
MroXI GAANNNNTTC 1 cut(s) 81
MseI TTAA 1 cut(s) 231
MslI CAYNNNNRTG 1 cut(s) 41
MspI CCGG 1 cut(s) 197
MwoI GCNNNNNNNGC 2 cut(s) 127, 202
NdeII GATC 1 cut(s) 51
NlaIII CATG 6 cut(s) 10, 40, 92, 209, 225, 292
NmuCI GTSAC 1 cut(s) 250
NsbI TGCGCA 1 cut(s) 226
NspI RCATGY 3 cut(s) 40, 209, 292
NspV TTCGAA 1 cut(s) 70
PaeI GCATGC 1 cut(s) 209
PciI ACATGT 1 cut(s) 288
PdmI GAANNNNTTC 1 cut(s) 81
PkrI GCNGC 1 cut(s) 94
PscI ACATGT 1 cut(s) 288
RsaI GTAC 3 cut(s) 104, 170, 293
RsaNI GTAC 3 cut(s) 103, 169, 292
RseI CAYNNNNRTG 1 cut(s) 41
SaqAI TTAA 1 cut(s) 231
SatI GCNGC 1 cut(s) 93
Sau3AI GATC 1 cut(s) 51
SfcI CTRYAG 1 cut(s) 55
SfuI TTCGAA 1 cut(s) 70
SmiMI CAYNNNNRTG 1 cut(s) 41
SphI GCATGC 1 cut(s) 209
Sse9I AATT 2 cut(s) 173, 306
SsiI CCGC 1 cut(s) 318
StyI CCWWGG 1 cut(s) 152
TaqI TCGA 1 cut(s) 70
TaqII GACCGA 1 cut(s) 318
TasI AATT 2 cut(s) 173, 306
TatI WGTACW 1 cut(s) 291
Tru1I TTAA 1 cut(s) 231
Tru9I TTAA 1 cut(s) 231
TseFI GTSAC 1 cut(s) 250
TseI GCWGC 1 cut(s) 92
Tsp45I GTSAC 1 cut(s) 250
XapI RAATTY 1 cut(s) 173
XceI RCATGY 3 cut(s) 40, 209, 292
XmnI GAANNNNTTC 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.