Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0004252

Physical Location & Seq

Genomic Coordinates Reverse (-)

16807808 .. 16808586

Gene Structure 779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG096000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGATTGGTGACAACTCGTCTGTGGTGTTGAAAGGAATTGGGACGGAAATTGAATGGTACGATAGGAAAAGCTTGACAGAGAAACTTCTTTTAGTAAGGTTGCACAAAGGTTCGCAAGTCAAAGTTATAGAGAAGTGTCGAAGCTTCTTCAGCTTCTTTGAAACAAAAATATATGAACAGGGTTTTGTCTTTAATGAAGAATCTGGTGAACTCGAAGGGCTGCTACCGATGGATTATATAATTGGTCTTGCTATTCGAAACCAAATCATTCCTCATGCAGCATTGTGGTACAAACATGAAGAGGAGAATTGTGTGCAGGATGATGAGACAATCATTCCTTGGGCAGAAGGGTGGTACGAATATGTAATCGATGATTGTAGGCCAGAAGATCATGCTGTCATTTTGACATGCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

138

Amino Acids

16.05

Weight (kDa)

4.66

Isoelectric Point (pI)

41.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	10 - 99	2.8e-14	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0004252)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0329211 RchiOBHm_Chr5g0026901
rosa_laevigata	RLG00000005131 RLG00000020175 RLG00000021041 RLG00000029910
rosa_multiflora	Rmu_sc0000203.1_g000002 Rmu_sc0004223.1_g000010 Rmu_sc0014333.1_g000006
rosa_roxburghii	Rroxscaffold_3G00271320 Rroxscaffold_3G00271330
rosa_rugosa	Rorug01G0076600 Rorug01G0076600 Rorug01G0076700 Rorug01G0076800 Rorug01G0076900 Rorug01G0077000 Rorug01G0077100 Rorug06G0447000
rosa_samantha	Rh1AG096000 Rh1AG096100 Rh1BG076500 Rh1BG076600 Rh1BG076800 Rh1BG076900 Rh1CG092800 Rh1DG099400 Rh5AG189400 Rh5CG206400 Rh5DG188600 Rh7BG050000
rosa_wichuraiana	Rw1G007440 Rw5G017220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	133
AfaI	GTAC	3 cut(s)	59, 290, 356
AgsI	TTSAA	3 cut(s)	31, 53, 161
AhdI	GACNNNNNGTC	1 cut(s)	16
AluBI	AGCT	3 cut(s)	72, 144, 153
AluI	AGCT	3 cut(s)	72, 144, 153
Alw26I	GTCTC	1 cut(s)	320
AoxI	GGCC	1 cut(s)	380
ApeKI	GCWGC	2 cut(s)	220, 278
AsuHPI	GGTGA	2 cut(s)	20, 218
AsuII	TTCGAA	1 cut(s)	256
BarI	GAAGNNNNNNTAC	2 cut(s)	207, 239
BbvI	GCAGC	2 cut(s)	207, 290
BccI	CCATC	1 cut(s)	223
BcoDI	GTCTC	1 cut(s)	320
BisI	GCNGC	2 cut(s)	221, 279
BlsI	GCNGC	2 cut(s)	222, 280
BmeRI	GACNNNNNGTC	1 cut(s)	16
Bpu14I	TTCGAA	1 cut(s)	256
Bsa29I	ATCGAT	1 cut(s)	369
BsaJI	CCNNGG	1 cut(s)	338
BseCI	ATCGAT	1 cut(s)	369
BseDI	CCNNGG	1 cut(s)	338
BseGI	GGATG	1 cut(s)	325
BseRI	GAGGAG	1 cut(s)	317
BseXI	GCAGC	2 cut(s)	207, 290
BsgI	GTGCAG	1 cut(s)	335
BshFI	GGCC	1 cut(s)	382
BshVI	ATCGAT	1 cut(s)	369
BslFI	GGGAC	1 cut(s)	55
BsmAI	GTCTC	1 cut(s)	320
BsmFI	GGGAC	1 cut(s)	55
BsnI	GGCC	1 cut(s)	382
Bsp119I	TTCGAA	1 cut(s)	256
Bsp143I	GATC	1 cut(s)	388
BspANI	GGCC	1 cut(s)	382
BspDI	ATCGAT	1 cut(s)	369
BspT104I	TTCGAA	1 cut(s)	256
BssECI	CCNNGG	1 cut(s)	338
BssMI	GATC	1 cut(s)	388
BssT1I	CCWWGG	1 cut(s)	338
Bst6I	CTCTTC	1 cut(s)	294
BstBI	TTCGAA	1 cut(s)	256
BstF5I	GGATG	1 cut(s)	325
BstKTI	GATC	1 cut(s)	391
BstMAI	GTCTC	1 cut(s)	320
BstMBI	GATC	1 cut(s)	388
BstMWI	GCNNNNNNNGC	1 cut(s)	150
BstNSI	RCATGY	1 cut(s)	411
BstV1I	GCAGC	2 cut(s)	207, 290
Bsu15I	ATCGAT	1 cut(s)	369
BsuRI	GGCC	1 cut(s)	382
BsuTUI	ATCGAT	1 cut(s)	369
BtsCI	GGATG	1 cut(s)	325
ClaI	ATCGAT	1 cut(s)	369
Csp6I	GTAC	3 cut(s)	58, 289, 355
CviAII	CATG	4 cut(s)	275, 296, 392, 408
CviJI	RGCY	5 cut(s)	72, 144, 153, 220, 382
CviKI_1	RGCY	5 cut(s)	72, 144, 153, 220, 382
CviQI	GTAC	3 cut(s)	58, 289, 355
DpnI	GATC	1 cut(s)	390
DpnII	GATC	1 cut(s)	388
DriI	GACNNNNNGTC	1 cut(s)	16
Eam1104I	CTCTTC	1 cut(s)	294
Eam1105I	GACNNNNNGTC	1 cut(s)	16
EarI	CTCTTC	1 cut(s)	294
Eco130I	CCWWGG	1 cut(s)	338
Eco57I	CTGAAG	1 cut(s)	133
EcoT14I	CCWWGG	1 cut(s)	338
ErhI	CCWWGG	1 cut(s)	338
FaeI	CATG	4 cut(s)	278, 299, 395, 411
FaqI	GGGAC	1 cut(s)	55
FatI	CATG	4 cut(s)	274, 295, 391, 407
Fnu4HI	GCNGC	2 cut(s)	221, 279
FokI	GGATG	1 cut(s)	332
Fsp4HI	GCNGC	2 cut(s)	221, 279
GluI	GCNGC	2 cut(s)	221, 279
HaeIII	GGCC	1 cut(s)	382
Hin1II	CATG	4 cut(s)	278, 299, 395, 411
HindIII	AAGCTT	2 cut(s)	70, 142
HinfI	GANTC	1 cut(s)	200
HphI	GGTGA	2 cut(s)	20, 218
Hpy166II	GTNNAC	1 cut(s)	209
Hpy8I	GTNNAC	1 cut(s)	209
HpyAV	CCTTC	2 cut(s)	209, 341
HpyCH4V	TGCA	4 cut(s)	103, 278, 316, 411
HpyF10VI	GCNNNNNNNGC	1 cut(s)	150
Hsp92II	CATG	4 cut(s)	278, 299, 395, 411
Kzo9I	GATC	1 cut(s)	388
LpnPI	CCDG	4 cut(s)	164, 189, 302, 396
Lsp1109I	GCAGC	2 cut(s)	207, 290
MaeIII	GTNAC	1 cut(s)	8
MalI	GATC	1 cut(s)	390
MboI	GATC	1 cut(s)	388
MboII	GAAGA	4 cut(s)	139, 209, 311, 398
MluCI	AATT	4 cut(s)	36, 48, 240, 307
MnlI	CCTC	2 cut(s)	282, 295
MseI	TTAA	1 cut(s)	192
MwoI	GCNNNNNNNGC	1 cut(s)	150
NdeII	GATC	1 cut(s)	388
NlaIII	CATG	4 cut(s)	278, 299, 395, 411
NmuCI	GTSAC	1 cut(s)	8
NspI	RCATGY	1 cut(s)	411
NspV	TTCGAA	1 cut(s)	256
PfeI	GAWTC	1 cut(s)	200
PkrI	GCNGC	2 cut(s)	222, 280
RsaI	GTAC	3 cut(s)	59, 290, 356
RsaNI	GTAC	3 cut(s)	58, 289, 355
SaqAI	TTAA	1 cut(s)	192
SatI	GCNGC	2 cut(s)	221, 279
Sau3AI	GATC	1 cut(s)	388
SetI	ASST	5 cut(s)	74, 101, 112, 146, 155
SfuI	TTCGAA	1 cut(s)	256
Sse9I	AATT	4 cut(s)	36, 48, 240, 307
StyI	CCWWGG	1 cut(s)	338
TaqI	TCGA	4 cut(s)	139, 213, 256, 369
TasI	AATT	4 cut(s)	36, 48, 240, 307
TfiI	GAWTC	1 cut(s)	200
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TseFI	GTSAC	1 cut(s)	8
TseI	GCWGC	2 cut(s)	220, 278
Tsp45I	GTSAC	1 cut(s)	8
TspDTI	ATGAA	3 cut(s)	189, 210, 312
TspGWI	ACGGA	1 cut(s)	59
XceI	RCATGY	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.