Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0004252

Physical Location & Seq

Genomic Coordinates Reverse (-)

11811321 .. 11813070

Gene Structure 1750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG076600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGACAACAGAGGACTGCGGTGTATCAAAAAAGAGGAAAGCCGTTTCCTTCGACGTTCCCGAACCCGATCCCGACTCCTCCCCTCCGTCCCGCCACCGCCCCAGTAAAGACTCCCGACGTCTTCTTCCCGTCCCCACCGATGCTCATTTGTTCGACAACGAGATCGACTACACTACTGATCGCAAGTACCGTATTCCCGACTGGATATGGGATGACAATGCTAGAGGTAAAAAAGATGATAATCATCGACTATTGTTCTTGAACCGTAGGGTACGTGAAATTGATCTGAAGCGCTTACAAGTGAAATTTCTTAAAGAGGAAAAGATATTTCAAGATAAGAAACAGAAATGGGTTGAAGAATACTTGAATCAGCCTGGCTGCGACCAGGATGAGTTGAAAAAGAACTTGTTTGCGGAGGTATCTAAATGGGAAGCACGATACGAGGAGGAGCACTTTGAGCCCTTCTACAAAAAGAGATATGAGATTGTTACTGGAGGAGGATATGAAAAACCAATTAAAGACAAGGGACTGGATTCATTTTGGGTTTCTGCGTTGAAGGCAAATCAGATACTTGTTAGGCAGATTGAATCACCAGACCATGATTATCAGGCTCTCTGTCATATCACTGATATCAGGACGGAAATTGAATGGTATGATAAGAGAAGCTTGACAGAGAAACTTCTTTTAGTAAGGTTGCACAAAGGTTCGCAAGTCAAAGTTATAGAGAAGTGTCGAAGCTTCTTCAACTTCTTTGAAACGAAAATTTATGAACAGGGTTTTATCTTTAATGAAGAATCTGGTGAACTCAAAGGGCTGCTACCGATGGATTATATAATTGGTCTTGCTATTCGAAACCAAATCATTCCTCATGCAGCATTGTGGTACAAACATGAAGAGGAGAATTGTGTGCAGGATGATGACACAATCATTCCTTGGGCAGAAGGGTGGTACGAATATGTAATCGATGATTGTAGGCCAGAAGATCATGCTGTCATTTTGACATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

335

Amino Acids

39.95

Weight (kDa)

5.52

Isoelectric Point (pI)

51.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	128 - 214	1.8e-09	Nucleosome assembly protein (NAP)
NAP	PF00956	213 - 297	4.9e-12	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004252)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0329211 RchiOBHm_Chr5g0026901
rosa_laevigata	RLG00000005131 RLG00000020175 RLG00000021041 RLG00000029910
rosa_multiflora	Rmu_sc0000203.1_g000002 Rmu_sc0004223.1_g000010 Rmu_sc0014333.1_g000006
rosa_roxburghii	Rroxscaffold_3G00271320 Rroxscaffold_3G00271330
rosa_rugosa	Rorug01G0076600 Rorug01G0076600 Rorug01G0076700 Rorug01G0076800 Rorug01G0076900 Rorug01G0077000 Rorug01G0077100 Rorug06G0447000
rosa_samantha	Rh1AG096000 Rh1AG096100 Rh1BG076500 Rh1BG076600 Rh1BG076800 Rh1BG076900 Rh1CG092800 Rh1DG099400 Rh5AG189400 Rh5CG206400 Rh5DG188600 Rh7BG050000
rosa_wichuraiana	Rw1G007440 Rw5G017220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	121
AciI	CCGC	4 cut(s)	18, 91, 97, 413
AclWI	GGATC	1 cut(s)	62
AcsI	RAATTY	2 cut(s)	305, 762
AcuI	CTGAAG	1 cut(s)	308
AcyI	GRCGYC	1 cut(s)	118
AfaI	GTAC	4 cut(s)	188, 273, 884, 950
AfeI	AGCGCT	1 cut(s)	293
AjnI	CCWGG	2 cut(s)	373, 384
AluBI	AGCT	2 cut(s)	666, 738
AluI	AGCT	2 cut(s)	666, 738
Alw21I	GWGCWC	1 cut(s)	453
AlwI	GGATC	1 cut(s)	62
Aor51HI	AGCGCT	1 cut(s)	293
AoxI	GGCC	1 cut(s)	974
ApeKI	GCWGC	3 cut(s)	378, 814, 872
ApoI	RAATTY	2 cut(s)	305, 762
AspLEI	GCGC	1 cut(s)	294
AsuHPI	GGTGA	2 cut(s)	582, 812
AsuII	TTCGAA	1 cut(s)	850
BanII	GRGCYC	1 cut(s)	462
BbsI	GAAGAC	1 cut(s)	113
Bbv12I	GWGCWC	1 cut(s)	453
BbvI	GCAGC	3 cut(s)	365, 801, 884
BccI	CCATC	1 cut(s)	817
BceAI	ACGGC	1 cut(s)	26
BciT130I	CCWGG	2 cut(s)	375, 386
BfaI	CTAG	1 cut(s)	222
BfoI	RGCGCY	1 cut(s)	295
BisI	GCNGC	3 cut(s)	379, 815, 873
BlsI	GCNGC	3 cut(s)	380, 816, 874
Bme1390I	CCNGG	2 cut(s)	375, 386
BmrFI	CCNGG	2 cut(s)	375, 386
BmrI	ACTGGG	1 cut(s)	96
BmsI	GCATC	1 cut(s)	130
BmuI	ACTGGG	1 cut(s)	96
BpiI	GAAGAC	1 cut(s)	113
BpmI	CTGGAG	1 cut(s)	513
Bpu14I	TTCGAA	1 cut(s)	850
Bsa29I	ATCGAT	1 cut(s)	963
BsaAI	YACGTR	1 cut(s)	275
BsaBI	GATNNNNATC	2 cut(s)	240, 243
BsaHI	GRCGYC	1 cut(s)	118
BsaJI	CCNNGG	1 cut(s)	932
Bse1I	ACTGG	4 cut(s)	102, 206, 496, 534
Bse8I	GATNNNNATC	2 cut(s)	240, 243
BseBI	CCWGG	2 cut(s)	375, 386
BseCI	ATCGAT	1 cut(s)	963
BseDI	CCNNGG	1 cut(s)	932
BseGI	GGATG	3 cut(s)	217, 394, 919
BseJI	GATNNNNATC	2 cut(s)	240, 243
BseNI	ACTGG	4 cut(s)	102, 206, 496, 534
BseRI	GAGGAG	5 cut(s)	67, 458, 461, 510, 911
BseXI	GCAGC	3 cut(s)	365, 801, 884
BsgI	GTGCAG	1 cut(s)	929
BshFI	GGCC	1 cut(s)	976
BshVI	ATCGAT	1 cut(s)	963
BsiHKAI	GWGCWC	1 cut(s)	453
BslFI	GGGAC	3 cut(s)	73, 116, 540
BsmFI	GGGAC	3 cut(s)	73, 116, 540
BsnI	GGCC	1 cut(s)	976
Bsp119I	TTCGAA	1 cut(s)	850
Bsp1286I	GDGCHC	2 cut(s)	453, 462
Bsp143I	GATC	5 cut(s)	67, 162, 178, 283, 982
BspACI	CCGC	4 cut(s)	18, 91, 97, 413
BspANI	GGCC	1 cut(s)	976
BspDI	ATCGAT	1 cut(s)	963
BspPI	GGATC	1 cut(s)	62
BspT104I	TTCGAA	1 cut(s)	850
BsrI	ACTGG	4 cut(s)	102, 206, 496, 534
BssECI	CCNNGG	1 cut(s)	932
BssMI	GATC	5 cut(s)	67, 162, 178, 283, 982
BssNI	GRCGYC	1 cut(s)	118
BssT1I	CCWWGG	1 cut(s)	932
Bst2UI	CCWGG	2 cut(s)	375, 386
Bst4CI	ACNGT	2 cut(s)	191, 266
Bst6I	CTCTTC	1 cut(s)	888
BstACI	GRCGYC	1 cut(s)	118
BstBAI	YACGTR	1 cut(s)	275
BstBI	TTCGAA	1 cut(s)	850
BstF5I	GGATG	3 cut(s)	217, 394, 919
BstH2I	RGCGCY	1 cut(s)	295
BstHHI	GCGC	1 cut(s)	294
BstKTI	GATC	5 cut(s)	70, 165, 181, 286, 985
BstMBI	GATC	5 cut(s)	67, 162, 178, 283, 982
BstMWI	GCNNNNNNNGC	2 cut(s)	457, 557
BstNI	CCWGG	2 cut(s)	375, 386
BstSCI	CCNGG	2 cut(s)	373, 384
BstV1I	GCAGC	3 cut(s)	365, 801, 884
BstV2I	GAAGAC	1 cut(s)	113
Bsu15I	ATCGAT	1 cut(s)	963
BsuRI	GGCC	1 cut(s)	976
BsuTUI	ATCGAT	1 cut(s)	963
BtsCI	GGATG	3 cut(s)	217, 394, 919
BtsIMutI	CAGTG	1 cut(s)	624
CfoI	GCGC	1 cut(s)	294
ClaI	ATCGAT	1 cut(s)	963
Csp6I	GTAC	4 cut(s)	187, 272, 883, 949
CviAII	CATG	5 cut(s)	599, 869, 890, 986, 1002
CviJI	RGCY	9 cut(s)	41, 373, 378, 460, 611, 666, 738, 814, 976
CviKI_1	RGCY	9 cut(s)	41, 373, 378, 460, 611, 666, 738, 814, 976
CviQI	GTAC	4 cut(s)	187, 272, 883, 949
DpnI	GATC	5 cut(s)	69, 164, 180, 285, 984
DpnII	GATC	5 cut(s)	67, 162, 178, 283, 982
Eam1104I	CTCTTC	1 cut(s)	888
EarI	CTCTTC	1 cut(s)	888
Eco130I	CCWWGG	1 cut(s)	932
Eco24I	GRGCYC	1 cut(s)	462
Eco32I	GATATC	1 cut(s)	631
Eco47III	AGCGCT	1 cut(s)	293
Eco57I	CTGAAG	1 cut(s)	308
EcoRII	CCWGG	2 cut(s)	373, 384
EcoRV	GATATC	1 cut(s)	631
EcoT14I	CCWWGG	1 cut(s)	932
EcoT38I	GRGCYC	1 cut(s)	462
ErhI	CCWWGG	1 cut(s)	932
FaeI	CATG	5 cut(s)	602, 872, 893, 989, 1005
FalI	AAGNNNNNCTT	2 cut(s)	650, 682
FaqI	GGGAC	3 cut(s)	73, 116, 540
FatI	CATG	5 cut(s)	598, 868, 889, 985, 1001
FauI	CCCGC	1 cut(s)	98
Fnu4HI	GCNGC	3 cut(s)	379, 815, 873
FokI	GGATG	3 cut(s)	224, 401, 926
FriOI	GRGCYC	1 cut(s)	462
Fsp4HI	GCNGC	3 cut(s)	379, 815, 873
FspBI	CTAG	1 cut(s)	222
GlaI	GCGC	1 cut(s)	293
GluI	GCNGC	3 cut(s)	379, 815, 873
GsuI	CTGGAG	1 cut(s)	513
HaeII	RGCGCY	1 cut(s)	295
HaeIII	GGCC	1 cut(s)	976
HhaI	GCGC	1 cut(s)	294
Hin1I	GRCGYC	1 cut(s)	118
Hin1II	CATG	5 cut(s)	602, 872, 893, 989, 1005
Hin6I	GCGC	1 cut(s)	292
HinP1I	GCGC	1 cut(s)	292
HindIII	AAGCTT	2 cut(s)	664, 736
HinfI	GANTC	6 cut(s)	74, 110, 367, 533, 587, 794
HphI	GGTGA	2 cut(s)	582, 812
Hpy166II	GTNNAC	1 cut(s)	803
Hpy188I	TCNGA	2 cut(s)	288, 567
Hpy188III	TCNNGA	7 cut(s)	59, 71, 114, 197, 259, 332, 634
Hpy8I	GTNNAC	1 cut(s)	803
Hpy99I	CGWCG	2 cut(s)	56, 120
HpyAV	CCTTC	4 cut(s)	58, 472, 550, 935
HpyCH4III	ACNGT	2 cut(s)	191, 266
HpyCH4IV	ACGT	3 cut(s)	54, 118, 274
HpyCH4V	TGCA	3 cut(s)	697, 872, 910
HpyF10VI	GCNNNNNNNGC	2 cut(s)	457, 557
HpySE526I	ACGT	3 cut(s)	54, 118, 274
Hsp92I	GRCGYC	1 cut(s)	118
Hsp92II	CATG	5 cut(s)	602, 872, 893, 989, 1005
HspAI	GCGC	1 cut(s)	292
Kzo9I	GATC	5 cut(s)	67, 162, 178, 283, 982
LmnI	GCTCC	1 cut(s)	448
Lsp1109I	GCAGC	3 cut(s)	365, 801, 884
LweI	GCATC	1 cut(s)	130
MaeI	CTAG	1 cut(s)	222
MaeII	ACGT	3 cut(s)	54, 118, 274
MaeIII	GTNAC	1 cut(s)	487
MalI	GATC	5 cut(s)	69, 164, 180, 285, 984
MboI	GATC	5 cut(s)	67, 162, 178, 283, 982
MboII	GAAGA	7 cut(s)	113, 116, 368, 733, 803, 905, 992
MhlI	GDGCHC	2 cut(s)	453, 462
MluCI	AATT	7 cut(s)	279, 305, 513, 642, 762, 834, 901
MlyI	GAGTC	2 cut(s)	68, 104
MseI	TTAA	3 cut(s)	312, 516, 786
MspR9I	CCNGG	2 cut(s)	375, 386
MvaI	CCWGG	2 cut(s)	375, 386
MwoI	GCNNNNNNNGC	2 cut(s)	457, 557
NdeII	GATC	5 cut(s)	67, 162, 178, 283, 982
NlaIII	CATG	5 cut(s)	602, 872, 893, 989, 1005
NspV	TTCGAA	1 cut(s)	850
PcsI	WCGNNNNNNNCGW	2 cut(s)	57, 187
PfeI	GAWTC	4 cut(s)	367, 533, 587, 794
PkrI	GCNGC	3 cut(s)	380, 816, 874
PleI	GAGTC	2 cut(s)	68, 104
PpsI	GAGTC	2 cut(s)	68, 104
Ppu21I	YACGTR	1 cut(s)	275
Psp6I	CCWGG	2 cut(s)	373, 384
PspGI	CCWGG	2 cut(s)	373, 384
RsaI	GTAC	4 cut(s)	188, 273, 884, 950
RsaNI	GTAC	4 cut(s)	187, 272, 883, 949
SaqAI	TTAA	3 cut(s)	312, 516, 786
SatI	GCNGC	3 cut(s)	379, 815, 873
Sau3AI	GATC	5 cut(s)	67, 162, 178, 283, 982
SchI	GAGTC	2 cut(s)	68, 104
ScrFI	CCNGG	2 cut(s)	375, 386
SduI	GDGCHC	2 cut(s)	453, 462
SetI	ASST	9 cut(s)	57, 121, 229, 277, 420, 668, 695, 706, 740
SfaNI	GCATC	1 cut(s)	130
SfuI	TTCGAA	1 cut(s)	850
Sse9I	AATT	7 cut(s)	279, 305, 513, 642, 762, 834, 901
SsiI	CCGC	4 cut(s)	18, 91, 97, 413
SspMI	CTAG	1 cut(s)	222
StyD4I	CCNGG	2 cut(s)	373, 384
StyI	CCWWGG	1 cut(s)	932
TaaI	ACNGT	2 cut(s)	191, 266
TaiI	ACGT	3 cut(s)	57, 121, 277
TaqI	TCGA	7 cut(s)	51, 153, 165, 247, 733, 850, 963
TasI	AATT	7 cut(s)	279, 305, 513, 642, 762, 834, 901
TfiI	GAWTC	4 cut(s)	367, 533, 587, 794
Tru1I	TTAA	3 cut(s)	312, 516, 786
Tru9I	TTAA	3 cut(s)	312, 516, 786
TscAI	CASTG	1 cut(s)	631
TseI	GCWGC	3 cut(s)	378, 814, 872
TspDTI	ATGAA	5 cut(s)	519, 525, 783, 804, 906
TspGWI	ACGGA	2 cut(s)	75, 653
TspRI	CASTG	1 cut(s)	631
XapI	RAATTY	2 cut(s)	305, 762
XspI	CTAG	1 cut(s)	222
ZraI	GACGTC	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.