Rroxscaffold_3G00271320

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0004252
Physical Location & Seq
Forward (+)
63695788 .. 63696786
999 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00271320.1

Sequence Viewer

Length: 378 bp
ATGATCATTTGTTCGACTACACTACAGTTCACAAGTACGATATTCCCGCCTGGATCTGGGATGACGGTCCTTGAGGTAAAAAAAGATGACGCTCATCGAATACATTTCTTGAACCATAGGACACGTGAAATCGATCTGAAGCGCTTACAAGTGAAATTTCTTAAAGAGGAAAAGATATTTCAAGATAAGAAACAGAAATGGGTAGAAGAATACTTGAATCAGCCTGGCTGCCACCAGGATGAGTTGAAAAAGAACTTGTTTGCGGAGACATCTAAATGGGAAGCACAATACGAGAAGGAGCACTTTGAGCCCTTCTACAGAAAGAGATATGAGATTGTTACTGGAGGAGGATATGAAAAACCATTTACAGGCCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

14.99

Weight (kDa)

8.82

Isoelectric Point (pI)

33.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 47, 263
AclWI GGATC 1 cut(s) 61
AcsI RAATTY 1 cut(s) 155
AcuI CTGAAG 1 cut(s) 158
AcvI CACGTG 1 cut(s) 125
AfaI GTAC 1 cut(s) 37
AfeI AGCGCT 1 cut(s) 143
AfiI CCNNNNNNNGG 2 cut(s) 56, 368
AflIII ACRYGT 1 cut(s) 122
AgsI TTSAA 4 cut(s) 112, 182, 217, 247
AjnI CCWGG 3 cut(s) 49, 223, 234
Alw21I GWGCWC 1 cut(s) 303
Alw26I GTCTC 1 cut(s) 260
AlwI GGATC 1 cut(s) 61
Aor51HI AGCGCT 1 cut(s) 143
AoxI GGCC 1 cut(s) 370
ApeKI GCWGC 1 cut(s) 228
ApoI RAATTY 1 cut(s) 155
AspLEI GCGC 1 cut(s) 144
AspS9I GGNCC 1 cut(s) 67
AvaII GGWCC 1 cut(s) 67
BanII GRGCYC 1 cut(s) 312
BbrPI CACGTG 1 cut(s) 125
Bbv12I GWGCWC 1 cut(s) 303
BbvI GCAGC 1 cut(s) 215
BciT130I CCWGG 3 cut(s) 51, 225, 236
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 1 cut(s) 260
BfmI CTRYAG 2 cut(s) 23, 316
BfoI RGCGCY 1 cut(s) 145
BisI GCNGC 1 cut(s) 229
BlsI GCNGC 1 cut(s) 230
Bme1390I CCNGG 3 cut(s) 51, 225, 236
Bme18I GGWCC 1 cut(s) 67
BmgT120I GGNCC 1 cut(s) 67
BmrFI CCNGG 3 cut(s) 51, 225, 236
BpmI CTGGAG 1 cut(s) 363
BpuEI CTTGAG 1 cut(s) 92
Bsa29I ATCGAT 1 cut(s) 132
BsaAI YACGTR 1 cut(s) 125
Bsc4I CCNNNNNNNGG 2 cut(s) 56, 368
Bse118I RCCGGY 1 cut(s) 372
Bse1I ACTGG 1 cut(s) 346
BseBI CCWGG 3 cut(s) 51, 225, 236
BseCI ATCGAT 1 cut(s) 132
BseGI GGATG 2 cut(s) 66, 244
BseLI CCNNNNNNNGG 2 cut(s) 56, 368
BseNI ACTGG 1 cut(s) 346
BseRI GAGGAG 1 cut(s) 360
BseXI GCAGC 1 cut(s) 215
BshFI GGCC 1 cut(s) 372
BshVI ATCGAT 1 cut(s) 132
BsiHKAI GWGCWC 1 cut(s) 303
BsiSI CCGG 1 cut(s) 373
BslI CCNNNNNNNGG 2 cut(s) 56, 368
BsmAI GTCTC 1 cut(s) 260
BsnI GGCC 1 cut(s) 372
Bsp1286I GDGCHC 2 cut(s) 303, 312
Bsp143I GATC 3 cut(s) 3, 53, 133
BspACI CCGC 2 cut(s) 47, 263
BspANI GGCC 1 cut(s) 372
BspDI ATCGAT 1 cut(s) 132
BspPI GGATC 1 cut(s) 61
BsrFI RCCGGY 1 cut(s) 372
BsrI ACTGG 1 cut(s) 346
BssAI RCCGGY 1 cut(s) 372
BssMI GATC 3 cut(s) 3, 53, 133
Bst2UI CCWGG 3 cut(s) 51, 225, 236
Bst4CI ACNGT 2 cut(s) 27, 67
BstBAI YACGTR 1 cut(s) 125
BstF5I GGATG 2 cut(s) 66, 244
BstH2I RGCGCY 1 cut(s) 145
BstHHI GCGC 1 cut(s) 144
BstKTI GATC 3 cut(s) 6, 56, 136
BstMAI GTCTC 1 cut(s) 260
BstMBI GATC 3 cut(s) 3, 53, 133
BstMWI GCNNNNNNNGC 1 cut(s) 307
BstNI CCWGG 3 cut(s) 51, 225, 236
BstSCI CCNGG 3 cut(s) 49, 223, 234
BstSFI CTRYAG 2 cut(s) 23, 316
BstV1I GCAGC 1 cut(s) 215
BstX2I RGATCY 1 cut(s) 53
BstYI RGATCY 1 cut(s) 53
Bsu15I ATCGAT 1 cut(s) 132
BsuRI GGCC 1 cut(s) 372
BsuTUI ATCGAT 1 cut(s) 132
BtsCI GGATG 2 cut(s) 66, 244
CfoI GCGC 1 cut(s) 144
Cfr10I RCCGGY 1 cut(s) 372
Cfr13I GGNCC 1 cut(s) 67
ClaI ATCGAT 1 cut(s) 132
CseI GACGC 1 cut(s) 98
Csp6I GTAC 1 cut(s) 36
CviJI RGCY 4 cut(s) 223, 228, 310, 372
CviKI_1 RGCY 4 cut(s) 223, 228, 310, 372
CviQI GTAC 1 cut(s) 36
DpnI GATC 3 cut(s) 5, 55, 135
DpnII GATC 3 cut(s) 3, 53, 133
Eco24I GRGCYC 1 cut(s) 312
Eco47I GGWCC 1 cut(s) 67
Eco47III AGCGCT 1 cut(s) 143
Eco57I CTGAAG 1 cut(s) 158
Eco72I CACGTG 1 cut(s) 125
EcoRII CCWGG 3 cut(s) 49, 223, 234
EcoT38I GRGCYC 1 cut(s) 312
FaiI YATR 3 cut(s) 117, 330, 354
FalI AAGNNNNNCTT 2 cut(s) 287, 319
FauI CCCGC 1 cut(s) 54
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 1 cut(s) 229
FokI GGATG 2 cut(s) 73, 251
FriOI GRGCYC 1 cut(s) 312
Fsp4HI GCNGC 1 cut(s) 229
GlaI GCGC 1 cut(s) 143
GluI GCNGC 1 cut(s) 229
GsuI CTGGAG 1 cut(s) 363
HaeII RGCGCY 1 cut(s) 145
HaeIII GGCC 1 cut(s) 372
HapII CCGG 1 cut(s) 373
HgaI GACGC 1 cut(s) 98
HhaI GCGC 1 cut(s) 144
Hin6I GCGC 1 cut(s) 142
HinP1I GCGC 1 cut(s) 142
HinfI GANTC 1 cut(s) 217
HpaII CCGG 1 cut(s) 373
Hpy166II GTNNAC 1 cut(s) 30
Hpy188I TCNGA 1 cut(s) 138
Hpy188III TCNNGA 2 cut(s) 109, 182
Hpy8I GTNNAC 1 cut(s) 30
HpyAV CCTTC 2 cut(s) 289, 322
HpyCH4III ACNGT 2 cut(s) 27, 67
HpyCH4IV ACGT 1 cut(s) 124
HpyF10VI GCNNNNNNNGC 1 cut(s) 307
HpySE526I ACGT 1 cut(s) 124
HspAI GCGC 1 cut(s) 142
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 3 cut(s) 3, 53, 133
LmnI GCTCC 1 cut(s) 298
LpnPI CCDG 9 cut(s) 36, 42, 63, 210, 221, 237, 248, 327, 354
Lsp1109I GCAGC 1 cut(s) 215
MaeII ACGT 1 cut(s) 124
MaeIII GTNAC 1 cut(s) 337
MalI GATC 3 cut(s) 5, 55, 135
MboI GATC 3 cut(s) 3, 53, 133
MboII GAAGA 1 cut(s) 218
MflI RGATCY 1 cut(s) 53
MhlI GDGCHC 2 cut(s) 303, 312
MluCI AATT 1 cut(s) 155
MnlI CCTC 4 cut(s) 67, 160, 338, 341
MseI TTAA 1 cut(s) 162
MslI CAYNNNNRTG 2 cut(s) 237, 274
MspI CCGG 1 cut(s) 373
MspR9I CCNGG 3 cut(s) 51, 225, 236
MvaI CCWGG 3 cut(s) 51, 225, 236
MwoI GCNNNNNNNGC 1 cut(s) 307
NdeII GATC 3 cut(s) 3, 53, 133
PfeI GAWTC 1 cut(s) 217
PkrI GCNGC 1 cut(s) 230
PmaCI CACGTG 1 cut(s) 125
PmlI CACGTG 1 cut(s) 125
Ppu21I YACGTR 1 cut(s) 125
Psp6I CCWGG 3 cut(s) 49, 223, 234
PspCI CACGTG 1 cut(s) 125
PspGI CCWGG 3 cut(s) 49, 223, 234
PspPI GGNCC 1 cut(s) 67
PsuI RGATCY 1 cut(s) 53
RsaI GTAC 1 cut(s) 37
RsaNI GTAC 1 cut(s) 36
RseI CAYNNNNRTG 2 cut(s) 237, 274
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 1 cut(s) 229
Sau3AI GATC 3 cut(s) 3, 53, 133
Sau96I GGNCC 1 cut(s) 67
ScrFI CCNGG 3 cut(s) 51, 225, 236
SduI GDGCHC 2 cut(s) 303, 312
SetI ASST 2 cut(s) 78, 127
SfcI CTRYAG 2 cut(s) 23, 316
SinI GGWCC 1 cut(s) 67
SmiMI CAYNNNNRTG 2 cut(s) 237, 274
SmlI CTYRAG 1 cut(s) 71
SmoI CTYRAG 1 cut(s) 71
Sse9I AATT 1 cut(s) 155
SsiI CCGC 2 cut(s) 47, 263
StyD4I CCNGG 3 cut(s) 49, 223, 234
TaaI ACNGT 2 cut(s) 27, 67
TaiI ACGT 1 cut(s) 127
TaqI TCGA 3 cut(s) 14, 97, 132
TasI AATT 1 cut(s) 155
TfiI GAWTC 1 cut(s) 217
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TseI GCWGC 1 cut(s) 228
TspDTI ATGAA 1 cut(s) 369
VpaK11BI GGWCC 1 cut(s) 67
XapI RAATTY 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.