Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0004252

Physical Location & Seq

Genomic Coordinates Reverse (-)

11825196 .. 11835275

Gene Structure 10080 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG076800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGTTGGCTTCTGTGTTTTGTAACGTAGACAAGGGACTGGATGAATTTTGGGTTTCTGCGTTGAAGGCAAATCAGATACTTGTTAGGCAGATTGAATCACCAGACCATGATTATCAGGCTCTCTGTCATATCACTGATATCAGGTGTCACAGGCTAGACGATCCGAGAGGATTCAAGCTCGAGTTTCTCTTTTCTCCTGATAATCCTTTTTTTAAAAATGAAATCCTTACTAAAACATTTGAGATGATTGGTGACAACTCGTCTGTGGTGTTGAAAGCAATTGGGACGGAAATTGAATGGTATGATAAGAGAAGCTTGACAGAGAAACTTCTTTTAGTAAGGTTGCACAAAGGTTCGCAAGTCAAAGTTATAGAGAAGTGTCGAAGCTTCTTCAACTTCTTTGAAACGAAAATTTATGAACAGGGTTTTATCTTTAATGAAGAATCTCAGAGTCCTTCACTCCCCCAACAGACAATCTTCTCCCTGGAGAAATCCGCCACCAGAGGCTCCAGCGAACCGACGAAGGGGTGGCGGCCAGCGATGGAGCTGATTCCGGCGACGCGCGGCACCAGAGAGTCGAAATCGAAGCGGTTGACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

199

Amino Acids

22.97

Weight (kDa)

7.67

Isoelectric Point (pI)

54.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	10 - 141	3.1e-30	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004252)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0329211 RchiOBHm_Chr5g0026901
rosa_laevigata	RLG00000005131 RLG00000020175 RLG00000021041 RLG00000029910
rosa_multiflora	Rmu_sc0000203.1_g000002 Rmu_sc0004223.1_g000010 Rmu_sc0014333.1_g000006
rosa_roxburghii	Rroxscaffold_3G00271320 Rroxscaffold_3G00271330
rosa_rugosa	Rorug01G0076600 Rorug01G0076600 Rorug01G0076700 Rorug01G0076800 Rorug01G0076900 Rorug01G0077000 Rorug01G0077100 Rorug06G0447000
rosa_samantha	Rh1AG096000 Rh1AG096100 Rh1BG076500 Rh1BG076600 Rh1BG076800 Rh1BG076900 Rh1CG092800 Rh1DG099400 Rh5AG189400 Rh5CG206400 Rh5DG188600 Rh7BG050000
rosa_wichuraiana	Rw1G007440 Rw5G017220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	566
AccI	GTMKAC	1 cut(s)	27
AccII	CGCG	2 cut(s)	562, 564
AciI	CCGC	4 cut(s)	495, 532, 564, 589
AclWI	GGATC	1 cut(s)	155
AcoI	YGGCCR	1 cut(s)	533
AcsI	RAATTY	2 cut(s)	44, 411
AfiI	CCNNNNNNNGG	1 cut(s)	524
AgsI	TTSAA	7 cut(s)	64, 95, 175, 274, 296, 394, 404
AhdI	GACNNNNNGTC	1 cut(s)	259
AjnI	CCWGG	1 cut(s)	483
AluBI	AGCT	4 cut(s)	178, 315, 387, 547
AluI	AGCT	4 cut(s)	178, 315, 387, 547
AlwI	GGATC	1 cut(s)	155
Ama87I	CYCGRG	1 cut(s)	179
AoxI	GGCC	1 cut(s)	533
ApoI	RAATTY	2 cut(s)	44, 411
AspLEI	GCGC	1 cut(s)	564
AsuHPI	GGTGA	2 cut(s)	90, 263
AvaI	CYCGRG	1 cut(s)	179
BanI	GGYRCC	1 cut(s)	566
BccI	CCATC	1 cut(s)	535
BciT130I	CCWGG	1 cut(s)	485
BfaI	CTAG	1 cut(s)	155
BisI	GCNGC	2 cut(s)	533, 565
BlsI	GCNGC	2 cut(s)	534, 566
Bme1390I	CCNGG	1 cut(s)	485
BmeRI	GACNNNNNGTC	1 cut(s)	259
BmeT110I	CYCGRG	1 cut(s)	179
BmiI	GGNNCC	2 cut(s)	508, 568
BmrFI	CCNGG	1 cut(s)	485
BpmI	CTGGAG	2 cut(s)	493, 506
BsaJI	CCNNGG	1 cut(s)	483
Bsc4I	CCNNNNNNNGG	1 cut(s)	524
Bse1I	ACTGG	1 cut(s)	42
BseBI	CCWGG	1 cut(s)	485
BseDI	CCNNGG	1 cut(s)	483
BseGI	GGATG	1 cut(s)	46
BseLI	CCNNNNNNNGG	1 cut(s)	524
BseMII	CTCAG	1 cut(s)	461
BseNI	ACTGG	1 cut(s)	42
Bsh1236I	CGCG	2 cut(s)	562, 564
BshFI	GGCC	1 cut(s)	535
BshNI	GGYRCC	1 cut(s)	566
BsiHKCI	CYCGRG	1 cut(s)	179
BsiSI	CCGG	1 cut(s)	554
BslFI	GGGAC	2 cut(s)	48, 298
BslI	CCNNNNNNNGG	1 cut(s)	524
BsmFI	GGGAC	2 cut(s)	48, 298
BsnI	GGCC	1 cut(s)	535
BsoBI	CYCGRG	1 cut(s)	179
Bsp143I	GATC	1 cut(s)	160
BspACI	CCGC	4 cut(s)	495, 532, 564, 589
BspANI	GGCC	1 cut(s)	535
BspCNI	CTCAG	1 cut(s)	460
BspFNI	CGCG	2 cut(s)	562, 564
BspLI	GGNNCC	2 cut(s)	508, 568
BspPI	GGATC	1 cut(s)	155
BspT107I	GGYRCC	1 cut(s)	566
BsrI	ACTGG	1 cut(s)	42
BssECI	CCNNGG	1 cut(s)	483
BssMI	GATC	1 cut(s)	160
Bst2UI	CCWGG	1 cut(s)	485
BstC8I	GCNNGC	1 cut(s)	537
BstDEI	CTNAG	1 cut(s)	447
BstF5I	GGATG	1 cut(s)	46
BstFNI	CGCG	2 cut(s)	562, 564
BstHHI	GCGC	1 cut(s)	564
BstKTI	GATC	1 cut(s)	163
BstMBI	GATC	1 cut(s)	160
BstMWI	GCNNNNNNNGC	1 cut(s)	65
BstNI	CCWGG	1 cut(s)	485
BstSCI	CCNGG	1 cut(s)	483
BstUI	CGCG	2 cut(s)	562, 564
BsuRI	GGCC	1 cut(s)	535
BtgZI	GCGATG	1 cut(s)	554
BtsCI	GGATG	1 cut(s)	46
BtsIMutI	CAGTG	1 cut(s)	132
Cac8I	GCNNGC	1 cut(s)	537
CfoI	GCGC	1 cut(s)	564
CseI	GACGC	1 cut(s)	568
CviAII	CATG	1 cut(s)	107
CviJI	RGCY	9 cut(s)	8, 119, 154, 178, 315, 387, 507, 535, 547
CviKI_1	RGCY	9 cut(s)	8, 119, 154, 178, 315, 387, 507, 535, 547
DdeI	CTNAG	1 cut(s)	447
DpnI	GATC	1 cut(s)	162
DpnII	GATC	1 cut(s)	160
DraI	TTTAAA	1 cut(s)	214
DriI	GACNNNNNGTC	1 cut(s)	259
EaeI	YGGCCR	1 cut(s)	533
Eam1105I	GACNNNNNGTC	1 cut(s)	259
EciI	GGCGGA	1 cut(s)	484
Eco32I	GATATC	1 cut(s)	139
Eco88I	CYCGRG	1 cut(s)	179
EcoRII	CCWGG	1 cut(s)	483
EcoRV	GATATC	1 cut(s)	139
FaeI	CATG	1 cut(s)	110
FaiI	YATR	5 cut(s)	108, 129, 303, 371, 417
FalI	AAGNNNNNCTT	2 cut(s)	299, 331
FaqI	GGGAC	2 cut(s)	48, 298
FatI	CATG	1 cut(s)	106
FblI	GTMKAC	1 cut(s)	27
Fnu4HI	GCNGC	2 cut(s)	533, 565
FokI	GGATG	1 cut(s)	53
Fsp4HI	GCNGC	2 cut(s)	533, 565
FspBI	CTAG	1 cut(s)	155
GlaI	GCGC	1 cut(s)	563
GluI	GCNGC	2 cut(s)	533, 565
GsuI	CTGGAG	2 cut(s)	493, 506
HaeIII	GGCC	1 cut(s)	535
HapII	CCGG	1 cut(s)	554
HgaI	GACGC	1 cut(s)	568
HhaI	GCGC	1 cut(s)	564
Hin1II	CATG	1 cut(s)	110
Hin6I	GCGC	1 cut(s)	562
HinP1I	GCGC	1 cut(s)	562
HincII	GTYRAC	1 cut(s)	594
HindII	GTYRAC	1 cut(s)	594
HindIII	AAGCTT	2 cut(s)	313, 385
HinfI	GANTC	6 cut(s)	95, 171, 443, 451, 550, 575
HpaII	CCGG	1 cut(s)	554
HphI	GGTGA	2 cut(s)	90, 263
Hpy166II	GTNNAC	2 cut(s)	28, 594
Hpy188I	TCNGA	3 cut(s)	75, 165, 450
Hpy188III	TCNNGA	1 cut(s)	197
Hpy8I	GTNNAC	2 cut(s)	28, 594
Hpy99I	CGWCG	2 cut(s)	523, 562
HpyAV	CCTTC	3 cut(s)	58, 465, 517
HpyCH4IV	ACGT	2 cut(s)	24, 596
HpyCH4V	TGCA	1 cut(s)	346
HpyF10VI	GCNNNNNNNGC	1 cut(s)	65
HpyF3I	CTNAG	1 cut(s)	447
HpySE526I	ACGT	2 cut(s)	24, 596
Hsp92II	CATG	1 cut(s)	110
HspAI	GCGC	1 cut(s)	562
Kzo9I	GATC	1 cut(s)	160
LmnI	GCTCC	2 cut(s)	512, 544
MaeI	CTAG	1 cut(s)	155
MaeII	ACGT	2 cut(s)	24, 596
MaeIII	GTNAC	3 cut(s)	20, 146, 251
MalI	GATC	1 cut(s)	162
MboI	GATC	1 cut(s)	160
MboII	GAAGA	3 cut(s)	382, 452, 469
MfeI	CAATTG	1 cut(s)	279
MluCI	AATT	4 cut(s)	44, 279, 291, 411
MlyI	GAGTC	2 cut(s)	460, 584
MnlI	CCTC	2 cut(s)	161, 497
MseI	TTAA	2 cut(s)	213, 435
MspI	CCGG	1 cut(s)	554
MspR9I	CCNGG	1 cut(s)	485
MunI	CAATTG	1 cut(s)	279
MvaI	CCWGG	1 cut(s)	485
MvnI	CGCG	2 cut(s)	562, 564
MwoI	GCNNNNNNNGC	1 cut(s)	65
NdeII	GATC	1 cut(s)	160
NlaIII	CATG	1 cut(s)	110
NlaIV	GGNNCC	2 cut(s)	508, 568
NmuCI	GTSAC	2 cut(s)	146, 251
PaeR7I	CTCGAG	1 cut(s)	179
PfeI	GAWTC	4 cut(s)	95, 171, 443, 550
PkrI	GCNGC	2 cut(s)	534, 566
PleI	GAGTC	2 cut(s)	459, 583
PpsI	GAGTC	2 cut(s)	459, 583
Psp6I	CCWGG	1 cut(s)	483
PspGI	CCWGG	1 cut(s)	483
PspN4I	GGNNCC	2 cut(s)	508, 568
PspXI	VCTCGAGB	1 cut(s)	179
SaqAI	TTAA	2 cut(s)	213, 435
SatI	GCNGC	2 cut(s)	533, 565
Sau3AI	GATC	1 cut(s)	160
SchI	GAGTC	2 cut(s)	460, 584
ScrFI	CCNGG	1 cut(s)	485
SetI	ASST	9 cut(s)	27, 146, 180, 317, 344, 355, 389, 549, 599
Sfr274I	CTCGAG	1 cut(s)	179
SlaI	CTCGAG	1 cut(s)	179
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
Sse9I	AATT	4 cut(s)	44, 279, 291, 411
SsiI	CCGC	4 cut(s)	495, 532, 564, 589
SspMI	CTAG	1 cut(s)	155
StyD4I	CCNGG	1 cut(s)	483
TaiI	ACGT	2 cut(s)	27, 599
TaqI	TCGA	4 cut(s)	180, 382, 578, 584
TasI	AATT	4 cut(s)	44, 279, 291, 411
TauI	GCSGC	2 cut(s)	535, 567
TfiI	GAWTC	4 cut(s)	95, 171, 443, 550
Tru1I	TTAA	2 cut(s)	213, 435
Tru9I	TTAA	2 cut(s)	213, 435
TscAI	CASTG	1 cut(s)	139
TseFI	GTSAC	2 cut(s)	146, 251
Tsp45I	GTSAC	2 cut(s)	146, 251
TspDTI	ATGAA	4 cut(s)	57, 234, 432, 453
TspGWI	ACGGA	1 cut(s)	302
TspRI	CASTG	1 cut(s)	139
XapI	RAATTY	2 cut(s)	44, 411
XhoI	CTCGAG	1 cut(s)	179
XmiI	GTMKAC	1 cut(s)	27
XspI	CTAG	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.