Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004252

Physical Location & Seq

Genomic Coordinates Reverse (-)

12577049 .. 12579662

Gene Structure 2614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0076900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGCAAGTGCAGCCCATGCTTTGATGGCAGCAAACACGTTTACACGCACATTCCCTACACAAAACACCTTCTTCTTCTCCAAAAGACATCACAAGATTAATCATCTCACCATCAGAGCTTCCACTGAAGACGCTGACTGTAATGTTGAAGAATGTGCTCCTGAAAAGGAGGTCGGAAAGGTCAGCGTGGAGTGGTTGGCTGGTGAGAAGACAAAAGTAGCAGGGACATTTCCTCCTCGTAAGACTCGGGGTTGGACTGGATATGTTGAGAAGGACACGGCTGGGCAGACAAATATATACTCTGTGGAGCCTGCAGTTTATGTAGCAGAAAGCGGAATAAGCTCAGGAACTGCAGGTTCTTCTTCTGATGGAGCTGAGAACACAGCAGCAATAGCTGCTGGACTTGCCCTCATCGCTATCGCTGCAGCTTCCTCCATACTCCTCCAAGTAGGTAAGAACCCACCACAGATTCAGAAAGTAGAATACTCTGGGCCATCACTTAGTTACTACATCAACAAGTTCAAGCCACAAGAGATAATACAAGCCTCGGCGCCAAGTGTGAGTGAATCGTCCTCAACAATTCAGCCAGAAAGCTTAGCGCCAGAACCTTCCCAGGTTAAGGTTGATTCAGAAGTTCAGCTGGAGCCTTCTGCTTACGGTGGCAGCACTATCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

225

Amino Acids

23.76

Weight (kDa)

5.43

Isoelectric Point (pI)

44.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004252)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0329211 RchiOBHm_Chr5g0026901
rosa_laevigata	RLG00000005131 RLG00000020175 RLG00000021041 RLG00000029910
rosa_multiflora	Rmu_sc0000203.1_g000002 Rmu_sc0004223.1_g000010 Rmu_sc0014333.1_g000006
rosa_roxburghii	Rroxscaffold_3G00271320 Rroxscaffold_3G00271330
rosa_rugosa	Rorug01G0076600 Rorug01G0076600 Rorug01G0076700 Rorug01G0076800 Rorug01G0076900 Rorug01G0077000 Rorug01G0077100 Rorug06G0447000
rosa_samantha	Rh1AG096000 Rh1AG096100 Rh1BG076500 Rh1BG076600 Rh1BG076800 Rh1BG076900 Rh1CG092800 Rh1DG099400 Rh5AG189400 Rh5CG206400 Rh5DG188600 Rh7BG050000
rosa_wichuraiana	Rw1G007440 Rw5G017220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	344
AccB1I	GGYRCC	1 cut(s)	550
AciI	CCGC	1 cut(s)	333
AcuI	CTGAAG	1 cut(s)	147
AcyI	GRCGYC	1 cut(s)	551
AfiI	CCNNNNNNNGG	1 cut(s)	619
AflIII	ACRYGT	1 cut(s)	36
AgsI	TTSAA	2 cut(s)	149, 523
AjnI	CCWGG	1 cut(s)	612
AluBI	AGCT	7 cut(s)	119, 342, 374, 395, 428, 594, 640
AluI	AGCT	7 cut(s)	119, 342, 374, 395, 428, 594, 640
Alw21I	GWGCWC	1 cut(s)	160
AlwNI	CAGNNNCTG	1 cut(s)	350
Ama87I	CYCGRG	1 cut(s)	246
AoxI	GGCC	1 cut(s)	491
ApeKI	GCWGC	7 cut(s)	11, 29, 386, 395, 422, 425, 663
AseI	ATTAAT	1 cut(s)	99
AspLEI	GCGC	2 cut(s)	553, 601
AspS9I	GGNCC	1 cut(s)	491
AsuHPI	GGTGA	2 cut(s)	100, 215
AvaI	CYCGRG	1 cut(s)	246
BanI	GGYRCC	1 cut(s)	550
BbsI	GAAGAC	2 cut(s)	135, 215
Bbv12I	GWGCWC	1 cut(s)	160
BbvI	GCAGC	6 cut(s)	23, 41, 382, 398, 409, 437
BccI	CCATC	4 cut(s)	19, 119, 362, 502
BceAI	ACGGC	1 cut(s)	294
BciT130I	CCWGG	1 cut(s)	614
BfmI	CTRYAG	3 cut(s)	312, 351, 423
BfoI	RGCGCY	2 cut(s)	554, 602
BfuAI	ACCTGC	1 cut(s)	344
BisI	GCNGC	7 cut(s)	12, 30, 387, 396, 423, 426, 664
BlpI	GCTNAGC	1 cut(s)	595
BlsI	GCNGC	7 cut(s)	13, 31, 388, 397, 424, 427, 665
Bme1390I	CCNGG	1 cut(s)	614
BmeT110I	CYCGRG	1 cut(s)	246
BmgT120I	GGNCC	1 cut(s)	491
BmiI	GGNNCC	3 cut(s)	309, 552, 645
BmrFI	CCNGG	1 cut(s)	614
BpiI	GAAGAC	2 cut(s)	135, 215
BpmI	CTGGAG	1 cut(s)	662
Bpu10I	CCTNAGC	1 cut(s)	343
Bpu1102I	GCTNAGC	1 cut(s)	595
BsaHI	GRCGYC	1 cut(s)	551
BsaJI	CCNNGG	2 cut(s)	546, 612
BsaXI	ACNNNNNCTCC	2 cut(s)	217, 247
Bsc4I	CCNNNNNNNGG	1 cut(s)	619
Bse1I	ACTGG	1 cut(s)	262
BseBI	CCWGG	1 cut(s)	614
BseDI	CCNNGG	2 cut(s)	546, 612
BseLI	CCNNNNNNNGG	1 cut(s)	619
BseMII	CTCAG	2 cut(s)	357, 366
BseNI	ACTGG	1 cut(s)	262
BseRI	GAGGAG	2 cut(s)	225, 431
BseXI	GCAGC	6 cut(s)	23, 41, 382, 398, 409, 437
BseYI	CCCAGC	1 cut(s)	281
BsgI	GTGCAG	1 cut(s)	30
BshFI	GGCC	1 cut(s)	493
BshNI	GGYRCC	1 cut(s)	550
BsiHKAI	GWGCWC	1 cut(s)	160
BsiHKCI	CYCGRG	1 cut(s)	246
BslFI	GGGAC	1 cut(s)	238
BslI	CCNNNNNNNGG	1 cut(s)	619
BsmFI	GGGAC	1 cut(s)	238
BsnI	GGCC	1 cut(s)	493
BsoBI	CYCGRG	1 cut(s)	246
Bsp1286I	GDGCHC	1 cut(s)	160
Bsp1720I	GCTNAGC	1 cut(s)	595
BspACI	CCGC	1 cut(s)	333
BspANI	GGCC	1 cut(s)	493
BspCNI	CTCAG	2 cut(s)	356, 367
BspLI	GGNNCC	3 cut(s)	309, 552, 645
BspMAI	CTGCAG	3 cut(s)	316, 355, 427
BspMI	ACCTGC	1 cut(s)	344
BspT107I	GGYRCC	1 cut(s)	550
BsrI	ACTGG	1 cut(s)	262
BssECI	CCNNGG	2 cut(s)	546, 612
BssNI	GRCGYC	1 cut(s)	551
Bst2UI	CCWGG	1 cut(s)	614
Bst4CI	ACNGT	2 cut(s)	140, 659
BstACI	GRCGYC	1 cut(s)	551
BstAPI	GCANNNNNTGC	2 cut(s)	17, 395
BstC8I	GCNNGC	1 cut(s)	312
BstDEI	CTNAG	5 cut(s)	343, 375, 500, 595, 675
BstH2I	RGCGCY	2 cut(s)	554, 602
BstHHI	GCGC	2 cut(s)	553, 601
BstMWI	GCNNNNNNNGC	9 cut(s)	11, 17, 26, 339, 392, 395, 404, 413, 422
BstNI	CCWGG	1 cut(s)	614
BstSCI	CCNGG	1 cut(s)	612
BstSFI	CTRYAG	3 cut(s)	312, 351, 423
BstV1I	GCAGC	6 cut(s)	23, 41, 382, 398, 409, 437
BstV2I	GAAGAC	2 cut(s)	135, 215
BsuRI	GGCC	1 cut(s)	493
BtgZI	GCGATG	1 cut(s)	397
BtsIMutI	CAGTG	1 cut(s)	123
BveI	ACCTGC	1 cut(s)	344
Cac8I	GCNNGC	1 cut(s)	312
CaiI	CAGNNNCTG	1 cut(s)	350
CfoI	GCGC	2 cut(s)	553, 601
Cfr13I	GGNCC	1 cut(s)	491
CseI	GACGC	1 cut(s)	140
CviAII	CATG	1 cut(s)	17
DdeI	CTNAG	5 cut(s)	343, 375, 500, 595, 675
DinI	GGCGCC	1 cut(s)	552
Eco57I	CTGAAG	1 cut(s)	147
Eco88I	CYCGRG	1 cut(s)	246
EcoRII	CCWGG	1 cut(s)	612
EgeI	GGCGCC	1 cut(s)	552
EheI	GGCGCC	1 cut(s)	552
FaeI	CATG	1 cut(s)	20
FaiI	YATR	6 cut(s)	18, 264, 296, 298, 321, 437
FaqI	GGGAC	1 cut(s)	238
FatI	CATG	1 cut(s)	16
Fnu4HI	GCNGC	7 cut(s)	12, 30, 387, 396, 423, 426, 664
Fsp4HI	GCNGC	7 cut(s)	12, 30, 387, 396, 423, 426, 664
GlaI	GCGC	2 cut(s)	552, 600
GluI	GCNGC	7 cut(s)	12, 30, 387, 396, 423, 426, 664
GsaI	CCCAGC	1 cut(s)	285
GsuI	CTGGAG	1 cut(s)	662
HaeII	RGCGCY	2 cut(s)	554, 602
HaeIII	GGCC	1 cut(s)	493
HgaI	GACGC	1 cut(s)	140
HhaI	GCGC	2 cut(s)	553, 601
Hin1I	GRCGYC	1 cut(s)	551
Hin1II	CATG	1 cut(s)	20
Hin6I	GCGC	2 cut(s)	551, 599
HinP1I	GCGC	2 cut(s)	551, 599
HindIII	AAGCTT	1 cut(s)	592
HinfI	GANTC	4 cut(s)	244, 469, 566, 626
HphI	GGTGA	2 cut(s)	100, 215
Hpy166II	GTNNAC	1 cut(s)	42
Hpy188I	TCNGA	5 cut(s)	116, 176, 367, 474, 631
Hpy188III	TCNNGA	2 cut(s)	161, 345
Hpy8I	GTNNAC	1 cut(s)	42
HpyAV	CCTTC	4 cut(s)	79, 265, 618, 657
HpyCH4III	ACNGT	2 cut(s)	140, 659
HpyCH4IV	ACGT	1 cut(s)	38
HpyCH4V	TGCA	4 cut(s)	11, 314, 353, 425
HpyF10VI	GCNNNNNNNGC	9 cut(s)	11, 17, 26, 339, 392, 395, 404, 413, 422
HpyF3I	CTNAG	5 cut(s)	343, 375, 500, 595, 675
HpySE526I	ACGT	1 cut(s)	38
Hsp92I	GRCGYC	1 cut(s)	551
Hsp92II	CATG	1 cut(s)	20
HspAI	GCGC	2 cut(s)	551, 599
KasI	GGCGCC	1 cut(s)	550
LmnI	GCTCC	4 cut(s)	163, 307, 371, 643
Lsp1109I	GCAGC	6 cut(s)	23, 41, 382, 398, 409, 437
MaeII	ACGT	1 cut(s)	38
MaeIII	GTNAC	1 cut(s)	503
MboII	GAAGA	7 cut(s)	64, 67, 140, 161, 220, 351, 354
MhlI	GDGCHC	1 cut(s)	160
MluCI	AATT	1 cut(s)	579
Mly113I	GGCGCC	1 cut(s)	551
MlyI	GAGTC	1 cut(s)	238
MmeI	TCCRAC	2 cut(s)	154, 233
MnlI	CCTC	8 cut(s)	163, 243, 246, 419, 442, 452, 556, 583
MseI	TTAA	2 cut(s)	99, 618
MspA1I	CMGCKG	1 cut(s)	640
MspR9I	CCNGG	1 cut(s)	614
MvaI	CCWGG	1 cut(s)	614
MwoI	GCNNNNNNNGC	9 cut(s)	11, 17, 26, 339, 392, 395, 404, 413, 422
NarI	GGCGCC	1 cut(s)	551
NlaIII	CATG	1 cut(s)	20
NlaIV	GGNNCC	3 cut(s)	309, 552, 645
NmeAIII	GCCGAG	1 cut(s)	527
PfeI	GAWTC	3 cut(s)	469, 566, 626
PkrI	GCNGC	7 cut(s)	13, 31, 388, 397, 424, 427, 665
PleI	GAGTC	1 cut(s)	238
PluTI	GGCGCC	1 cut(s)	554
PpsI	GAGTC	1 cut(s)	238
PshBI	ATTAAT	1 cut(s)	99
Psp6I	CCWGG	1 cut(s)	612
PspFI	CCCAGC	1 cut(s)	281
PspGI	CCWGG	1 cut(s)	612
PspN4I	GGNNCC	3 cut(s)	309, 552, 645
PspPI	GGNCC	1 cut(s)	491
PstI	CTGCAG	3 cut(s)	316, 355, 427
PstNI	CAGNNNCTG	1 cut(s)	350
PvuII	CAGCTG	1 cut(s)	640
SaqAI	TTAA	2 cut(s)	99, 618
SatI	GCNGC	7 cut(s)	12, 30, 387, 396, 423, 426, 664
Sau96I	GGNCC	1 cut(s)	491
SchI	GAGTC	1 cut(s)	238
ScrFI	CCNGG	1 cut(s)	614
SduI	GDGCHC	1 cut(s)	160
SfcI	CTRYAG	3 cut(s)	312, 351, 423
SfoI	GGCGCC	1 cut(s)	552
Sse9I	AATT	1 cut(s)	579
SsiI	CCGC	1 cut(s)	333
SspDI	GGCGCC	1 cut(s)	550
StyD4I	CCNGG	1 cut(s)	612
TaaI	ACNGT	2 cut(s)	140, 659
TaiI	ACGT	1 cut(s)	41
TasI	AATT	1 cut(s)	579
TfiI	GAWTC	3 cut(s)	469, 566, 626
Tru1I	TTAA	2 cut(s)	99, 618
Tru9I	TTAA	2 cut(s)	99, 618
TscAI	CASTG	1 cut(s)	130
TseI	GCWGC	7 cut(s)	11, 29, 386, 395, 422, 425, 663
TspRI	CASTG	1 cut(s)	130
VspI	ATTAAT	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.