Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004252

Physical Location & Seq

Genomic Coordinates Forward (+)

12521988 .. 12527052

Gene Structure 5065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0076600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3663 bp

ATGGCTTCTTCTTCTTCTCCTCCTCCTGCGCATGCCTTTAAGTATGATGTCTTCCTTAGTTTCCGAGGGGAGGACACCCGCAATACTTTTACCAGTCATCTTCATGCCGCTTTAAAGCAGAAGAAAATCGAAACCTACATAGATTACGAACTTGTGAGAGGAGAGGAAATTGCACCGGCCCTTCTCAAAGCAATAGAGGAATCGAAGCTTTCGGTGGTCATTTTGTCACAAGACTATGCTTCTTCAACATGGTGCTTGGACGAACTTGCTCATATTTTGGAATGCAAGGAAAGACACGGACAGATTGTTATACCCATTTTTTACAGAACAGATCCATCACATGTACGCCACCAGAGGGAGAGTTATGCAGCTGCATTTGTTCAACATGAAGAACGTTTCAAGGACAAGGTGCTCAAGTGGAGGGATGCTTTGACAAAAGCATCCAAACTAGCTGGGTTTGATTCACGCAGTATCGGCCTTGAATCCGAATTAGTTGAGTTAGTTGTCGAAGATATTGTGATGAAGATGAGTAGTGAATGCTCAAGCAATTTAAAGGGTCTGGTTGGAATTGAAAGTCGTATCCAGCGACTCGAGTCATTGTTATGCATTGATGTAGAAGATGTTCGTGTTCGCACTGTTGGTATTTGGGGTATGGGTGGTGTTGGCAAGACCACCCTTGCTGATGTTGTATTCAACCAACTCTCATCTCAATTCGAAGCTTCCTGTTTCCTTGCTGATGTCAGAGAAAAATCTGAGAAACATGGACTAGACGATTTGCGAGATAAACTTTTTGGCAAATTATTGAATGATGAAAGTCTAAGGATCGGCACTCGATCTATAGGATCAACTTTTATCAACAAGAGGCTCTCCCATGCAAAGGTCCTCGTTGTGCTTGATGATGTGAATGATGTTAGCCAACTAAAAACTTTAGTTGGTGATCAGGTTCAATTTGGACCAGGAAGTAGAATCATTATAACAACTAGAGATATTCATCAACTTAGAGAGATGCAACAACTGCATAAAGGAGCTGACCATGATGTTGTAATATACGAGGCAGAGGAACTAAATGATGATGAAGCACTTCAGCTCTTCCACTTGAATGATTCTGAGGAAATCAGTTGCGGAGCAGAATATACCGAATTAGTGAGAACGGTGGTGCATTATGCTGCGGGAATTCCCTTAGCCCTTCAAATATGGGGTTCCTTATTTCGTCGATGCAAGAGCACACAAGAACGGGAAAGTTTCTTGAAAAAGTTGAAAACGTTTCCTGAAAAGAAACTTCAAAATGTGTATAGGATAAGTTATGATGCATTAGGAGAAAATGAGAGGGAGATATTTCTTTATATCGCATGTTTTCACAAAGGAGAGAATGTAAATAGAGCAAAAGAACAATTGGATGCATGTGGATTATTTGCGGATAGTGGAATCAACATTCTCATTGATATGTCTCTGATATCAATCAAAGACAAATGGCGGACAGAAAAAACTGGTTACTTGTGGATGCATGATTTGATACAAGAAATGGGTTGGGCAATTGAGCGTGAACAACATCCGAAGCCTGGAAAGCGTAGAAGGCTGTGTACCCCGGAGGACATCTGTCATGTGTTGGAAAAGAATAAGGGGACTGAAAAAGTTCAAAGCATATCCCTAAACCTGTCTCAGATTACAAAGCTAAACTTGACTCCTCAAGCCTTCAAAAATATGTGTAATCTAAAATTTCTGAAGTTATATGGTGAAGATCGCTCGGGCCACTACTACTACCCTTGGAATGACTGCAATGTGCACCTTAATCTTCACAATCTGGAATATCTTCCTGATTCCCTTATATATCTCAGCTGGCCTGCATACACTTTGAAATATTTGCCATCAACATTTTCTGCTGAGAATCTGACTGAGCTTTCTATGCCTGGTAGCCAACTACAAAAACTTTGGGATGAAGGCCAGAAGCCTAGGAACTTAAAACGCCTCAATCTCAGTTATTCTGAGCAGCTGGTTGAAGTTCCAGATCTCTCTATGAGCGTAAACATTGAGAGGATAAACCTTGGAGGCTGTAAAAGGCTGGTTGAAATTCCTTCCTATTTTGAAAATCTTCACAAGCTTACTTCATTGAATGCGACCAATTGCTCGAATCTTAGTGTTCTCTCGGATATGCCATGCAATATGGTTTGGCTGGAGTTGGGTAGGACTGCAATAGAAGACTTGCCTTCATCAATTTGGTCCCTTGAAAAACTTGTTGAATTGAATCTTGACGGGTGCGAGGGCATTAAGAAACTTCCAAACAGCATTTGGAAGCTGTATTCCCTCACAAGTCTTAATTTGTCTGGGACAAGTATAGAAGGATTGCCCTCGTCAATCGAGTGTCTCTCTGGGTTACAATTTCTTGAACTGCAGAATTGCAAAAGGTTTGTCAGTCTCCCAACCAGCATTTATAAGTTGAAATCTCTCAAGACCTTTTATCTTTCTGGATGCTCTAGCTTGGAAAACTTCCCTGAGATCTTGGAGCCTATGGAACTTCTGGGGAATCTTAGTTTAGCAGGAACCAAATTTAAAGACGTAGTTGGGCGGAAGGAATTAGTGTTACCTGGGTGTAGAAGCTTTGAGTCTGTCCCAAACAGCATCTTGCCTCCGTCGTCGGTCATTTTATGGTCTTGGATGAGTAGGCTAGACCTCAGTGACTGCACAATGTTAGAAGAAATCCCTGATTGGATCTTTAGCCTAAACAGGTTATCTGAATTATATCTGCGTGGAACCATGATTAGGAGCATACCTTCAACCATCAATCAAGCATCCCGGCTGAGTATATTAGATCTACAGAATTGCAAGCGCCTTGAATCTTTACCCAAGCTCCCATATCTTCTAGAACGGATATTTGCAAGTGGCTGCAAGAGATTGAAGACAGTGTCTGGGTTCACGACTGCACTCACAGAACGTTTGGATCGAAGAGTTCTTTCAAATATATATTGGAAGCATTTATTTGATAACTGCGTAAGTTTGGATGAGAATGCAAGGAGGAACATAATGGATTATGCACATCTTAGAAATAAGGCAACAGCTCATCATCCGGGTCCGTACCTAATGAACTACAAAGCAATATGTCCGGGAAATGAAATTCCACAATGGGTGAGCAATCAAATGGAGGGGTCTTCGATAGATATCAAGCTTCCTCTACATTGGTCTGCAGATGCAAACTTTTTGGGTTTAGCTTTCTGCGTTGTTGTTGACTTCTCTAAAGCAGAAAATAAGATATGTTCGGGCGAATCCATTTTCAAAACCGAAAATGGTGAAAGCCATACCTTTAGCAGCAATTTTGAGAACTGGTTGATCGATTGTGATGACGACAACTCAGATCACCTGGTGTTGTGGTACGATTCCCTTGAGGAGGTGAGGTCCACTCCTTATTCCAATGCCACTCAAGCCTCTTTTCATTTCTTTGTATACAGCTTCAGCGATGATGGAAAGCAGCAGCGCTCGGTTGAGAATCCGGTGAAAAGGTGTGGGGTGGGCTTTATGTATGCTAAGGCCGAGACCGACAAAAAAAAAAAGAGAAACCAGAGAATAAAAGATGTGGAAATCAATTTATTAAAGGGGTCTCCCGGTCCAGAGAAACCAGAGCCGTTTAAAAGATGTTATTTAAAGGGGTCTCCCGGTCCATCAATTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

1220

Amino Acids

138.81

Weight (kDa)

6.23

Isoelectric Point (pI)

50.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	14 - 190	7.7e-56	TIR domain
TIR_2	PF13676	17 - 126	4.2e-16	TIR domain
NB-ARC	PF00931	209 - 365	2.8e-15	NB-ARC domain
WHD_ROQ1	PF23282	440 - 516	1.1e-16	Disease resistance protein Roq1-like, winged-helix domain
LRR_14	PF23598	761 - 847	5.7e-10	Leucine-rich repeat region
C-JID	PF20160	1032 - 1173	4e-14	C-JID domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004252)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0329211 RchiOBHm_Chr5g0026901
rosa_laevigata	RLG00000005131 RLG00000020175 RLG00000021041 RLG00000029910
rosa_multiflora	Rmu_sc0000203.1_g000002 Rmu_sc0004223.1_g000010 Rmu_sc0014333.1_g000006
rosa_roxburghii	Rroxscaffold_3G00271320 Rroxscaffold_3G00271330
rosa_rugosa	Rorug01G0076600 Rorug01G0076600 Rorug01G0076700 Rorug01G0076800 Rorug01G0076900 Rorug01G0077000 Rorug01G0077100 Rorug06G0447000
rosa_samantha	Rh1AG096000 Rh1AG096100 Rh1BG076500 Rh1BG076600 Rh1BG076800 Rh1BG076900 Rh1CG092800 Rh1DG099400 Rh5AG189400 Rh5CG206400 Rh5DG188600 Rh7BG050000
rosa_wichuraiana	Rw1G007440 Rw5G017220

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	974, 2430
Acc16I	TGCGCA	1 cut(s)	30
AccI	GTMKAC	1 cut(s)	3435
AciI	CCGC	7 cut(s)	79, 108, 1122, 1169, 1415, 1474, 2563
AclI	AACGTT	3 cut(s)	394, 1262, 2929
AclWI	GGATC	5 cut(s)	326, 830, 850, 2714, 2943
AcsI	RAATTY	5 cut(s)	1173, 1715, 2067, 2543, 3108
AcuI	CTGAAG	3 cut(s)	1067, 1742, 3427
AdeI	CACNNNGTG	1 cut(s)	3355
AfaI	GTAC	4 cut(s)	345, 1582, 3071, 3365
AfeI	AGCGCT	1 cut(s)	3467
AfiI	CCNNNNNNNGG	6 cut(s)	70, 355, 877, 1559, 2757, 3379
AflIII	ACRYGT	1 cut(s)	340
AjnI	CCWGG	5 cut(s)	955, 1558, 1906, 2581, 3351
Alw21I	GWGCWC	3 cut(s)	414, 1226, 1785
Alw26I	GTCTC	7 cut(s)	1452, 1662, 2366, 2417, 3518, 3594, 3645
Alw44I	GTGCAC	1 cut(s)	1781
AlwI	GGATC	5 cut(s)	326, 830, 850, 2714, 2943
AlwNI	CAGNNNCTG	2 cut(s)	2676, 2903
Ama87I	CYCGRG	2 cut(s)	590, 1744
Aor51HI	AGCGCT	1 cut(s)	3467
AoxI	GGCC	6 cut(s)	177, 475, 1747, 1838, 1939, 3519
ApaLI	GTGCAC	1 cut(s)	1781
ApeKI	GCWGC	8 cut(s)	368, 371, 1166, 1987, 2880, 3300, 3460, 3463
ApoI	RAATTY	5 cut(s)	1173, 1715, 2067, 2543, 3108
ArsI	GACNNNNNNTTYG	2 cut(s)	2391, 2423
Asp700I	GAANNNNTTC	5 cut(s)	621, 1080, 1632, 1809, 2088
AspA2I	CCTAGG	1 cut(s)	1949
AspLEI	GCGC	3 cut(s)	31, 2826, 3468
AspS9I	GGNCC	9 cut(s)	178, 880, 953, 1747, 2217, 3065, 3387, 3596, 3647
AsuC2I	CCSGG	6 cut(s)	1586, 2791, 3063, 3099, 3594, 3645
AsuHPI	GGTGA	7 cut(s)	947, 1745, 3133, 3293, 3341, 3394, 3496
AsuII	TTCGAA	1 cut(s)	714
AvaI	CYCGRG	2 cut(s)	590, 1744
AvaII	GGWCC	7 cut(s)	880, 953, 2217, 3065, 3387, 3596, 3647
AvrII	CCTAGG	1 cut(s)	1949
BaeGI	GKGCMC	1 cut(s)	1785
BarI	GAAGNNNNNNTAC	4 cut(s)	35, 67, 1564, 1596
BbsI	GAAGAC	4 cut(s)	43, 2202, 2900, 3135
Bbv12I	GWGCWC	3 cut(s)	414, 1226, 1785
BbvI	GCAGC	8 cut(s)	358, 380, 1153, 1999, 2867, 3312, 3472, 3475
BccI	CCATC	5 cut(s)	343, 1873, 2783, 3446, 3658
BceAI	ACGGC	1 cut(s)	3598
BciT130I	CCWGG	5 cut(s)	957, 1560, 1908, 2583, 3353
BciVI	GTATCC	1 cut(s)	590
BclI	TGATCA	1 cut(s)	937
BcnI	CCSGG	6 cut(s)	1586, 2791, 3063, 3099, 3594, 3645
BcoDI	GTCTC	7 cut(s)	1452, 1662, 2366, 2417, 3518, 3594, 3645
BfaI	CTAG	7 cut(s)	449, 767, 981, 1950, 2472, 2663, 2858
BfmI	CTRYAG	4 cut(s)	837, 2387, 2810, 3177
BfoI	RGCGCY	2 cut(s)	2827, 3469
BfuI	GTATCC	1 cut(s)	590
BglII	AGATCT	3 cut(s)	2005, 2493, 2806
BisI	GCNGC	9 cut(s)	108, 369, 372, 1167, 1988, 2881, 3301, 3461, 3464
BlnI	CCTAGG	1 cut(s)	1949
BlsI	GCNGC	9 cut(s)	109, 370, 373, 1168, 1989, 2882, 3302, 3462, 3465
Bme18I	GGWCC	7 cut(s)	880, 953, 2217, 3065, 3387, 3596, 3647
BmeT110I	CYCGRG	2 cut(s)	590, 1744
BmgT120I	GGNCC	9 cut(s)	178, 880, 953, 1747, 2217, 3065, 3387, 3596, 3647
BmiI	GGNNCC	6 cut(s)	1201, 2219, 2502, 2539, 2749, 3066
BoxI	GACNNNNGTC	2 cut(s)	592, 1596
BpiI	GAAGAC	4 cut(s)	43, 2202, 2900, 3135
BplI	GAGNNNNNCTC	4 cut(s)	2348, 2380, 3376, 3408
BpmI	CTGGAG	1 cut(s)	2192
Bpu10I	CCTNAGC	2 cut(s)	1180, 3516
Bpu14I	TTCGAA	1 cut(s)	714
BpuEI	CTTGAG	6 cut(s)	398, 526, 1671, 2429, 3395, 3396
BpuMI	CCSGG	6 cut(s)	1586, 2791, 3063, 3099, 3594, 3645
Bsa29I	ATCGAT	1 cut(s)	3324
BsaBI	GATNNNNATC	3 cut(s)	990, 1457, 3152
BsaI	GGTCTC	3 cut(s)	3518, 3594, 3645
BsaJI	CCNNGG	6 cut(s)	64, 1584, 1763, 1949, 2041, 2582
BsaWI	WCCGGW	1 cut(s)	3481
BsaXI	ACNNNNNCTCC	6 cut(s)	1356, 1386, 2829, 2859, 3371, 3401
Bsc4I	CCNNNNNNNGG	6 cut(s)	70, 355, 877, 1559, 2757, 3379
Bse118I	RCCGGY	1 cut(s)	175
Bse1I	ACTGG	3 cut(s)	93, 1492, 3320
Bse3DI	GCAATG	1 cut(s)	1783
Bse8I	GATNNNNATC	3 cut(s)	990, 1457, 3152
BseBI	CCWGG	5 cut(s)	957, 1560, 1908, 2583, 3353
BseCI	ATCGAT	1 cut(s)	3324
BseDI	CCNNGG	6 cut(s)	64, 1584, 1763, 1949, 2041, 2582
BseJI	GATNNNNATC	3 cut(s)	990, 1457, 3152
BseLI	CCNNNNNNNGG	6 cut(s)	70, 355, 877, 1559, 2757, 3379
BseMI	GCAATG	1 cut(s)	1783
BseNI	ACTGG	3 cut(s)	93, 1492, 3320
BseRI	GAGGAG	5 cut(s)	9, 12, 174, 1674, 3392
BseSI	GKGCMC	1 cut(s)	1785
BseXI	GCAGC	8 cut(s)	358, 380, 1153, 1999, 2867, 3312, 3472, 3475
BseYI	CCCAGC	1 cut(s)	452
BsgI	GTGCAG	2 cut(s)	2662, 2901
BshFI	GGCC	6 cut(s)	179, 477, 1749, 1840, 1941, 3521
BshVI	ATCGAT	1 cut(s)	3324
BsiHKAI	GWGCWC	3 cut(s)	414, 1226, 1785
BsiHKCI	CYCGRG	2 cut(s)	590, 1744
BsiSI	CCGG	8 cut(s)	176, 1586, 2791, 3062, 3098, 3482, 3594, 3645
BslFI	GGGAC	4 cut(s)	1636, 2203, 2338, 2591
BslI	CCNNNNNNNGG	6 cut(s)	70, 355, 877, 1559, 2757, 3379
BsmAI	GTCTC	7 cut(s)	1452, 1662, 2366, 2417, 3518, 3594, 3645
BsmFI	GGGAC	4 cut(s)	1636, 2203, 2338, 2591
BsmI	GAATGC	4 cut(s)	287, 542, 2116, 3007
BsnI	GGCC	6 cut(s)	179, 477, 1749, 1840, 1941, 3521
Bso31I	GGTCTC	3 cut(s)	3518, 3594, 3645
BsoBI	CYCGRG	2 cut(s)	590, 1744
Bsp119I	TTCGAA	1 cut(s)	714
Bsp1286I	GDGCHC	3 cut(s)	414, 1226, 1785
BspACI	CCGC	7 cut(s)	79, 108, 1122, 1169, 1415, 1474, 2563
BspANI	GGCC	6 cut(s)	179, 477, 1749, 1840, 1941, 3521
BspDI	ATCGAT	1 cut(s)	3324
BspLI	GGNNCC	6 cut(s)	1201, 2219, 2502, 2539, 2749, 3066
BspMAI	CTGCAG	2 cut(s)	2391, 3181
BspPI	GGATC	5 cut(s)	326, 830, 850, 2714, 2943
BspQI	GCTCTTC	1 cut(s)	1094
BspT104I	TTCGAA	1 cut(s)	714
BspTNI	GGTCTC	3 cut(s)	3518, 3594, 3645
BsrDI	GCAATG	1 cut(s)	1783
BsrFI	RCCGGY	1 cut(s)	175
BsrI	ACTGG	3 cut(s)	93, 1492, 3320
BssAI	RCCGGY	1 cut(s)	175
BssECI	CCNNGG	6 cut(s)	64, 1584, 1763, 1949, 2041, 2582
BssNAI	GTATAC	1 cut(s)	3436
BssT1I	CCWWGG	3 cut(s)	1763, 1949, 2041
Bst1107I	GTATAC	1 cut(s)	3436
Bst2UI	CCWGG	5 cut(s)	957, 1560, 1908, 2583, 3353
Bst4CI	ACNGT	3 cut(s)	637, 1153, 2899
Bst6I	CTCTTC	2 cut(s)	1094, 2935
BstAPI	GCANNNNNTGC	1 cut(s)	1015
BstBI	TTCGAA	1 cut(s)	714
BstC8I	GCNNGC	4 cut(s)	33, 1838, 1842, 2822
BstENI	CCTNNNNNAGG	1 cut(s)	3377
BstH2I	RGCGCY	2 cut(s)	2827, 3469
BstHHI	GCGC	3 cut(s)	31, 2826, 3468
BstMAI	GTCTC	7 cut(s)	1452, 1662, 2366, 2417, 3518, 3594, 3645
BstMWI	GCNNNNNNNGC	6 cut(s)	474, 1015, 1564, 1573, 1903, 3413
BstNI	CCWGG	5 cut(s)	957, 1560, 1908, 2583, 3353
BstNSI	RCATGY	4 cut(s)	35, 344, 1353, 1404
BstPAI	GACNNNNGTC	2 cut(s)	592, 1596
BstSFI	CTRYAG	4 cut(s)	837, 2387, 2810, 3177
BstSLI	GKGCMC	1 cut(s)	1785
BstV1I	GCAGC	8 cut(s)	358, 380, 1153, 1999, 2867, 3312, 3472, 3475
BstV2I	GAAGAC	4 cut(s)	43, 2202, 2900, 3135
BstX2I	RGATCY	5 cut(s)	331, 2005, 2493, 2706, 2806
BstYI	RGATCY	5 cut(s)	331, 2005, 2493, 2706, 2806
BstZ17I	GTATAC	1 cut(s)	3436
Bsu15I	ATCGAT	1 cut(s)	3324
BsuI	GTATCC	1 cut(s)	590
BsuRI	GGCC	6 cut(s)	179, 477, 1749, 1840, 1941, 3521
BsuTUI	ATCGAT	1 cut(s)	3324
BtgZI	GCGATG	1 cut(s)	3462
BtsIMutI	CAGTG	3 cut(s)	633, 2677, 2904
Cac8I	GCNNGC	4 cut(s)	33, 1838, 1842, 2822
CaiI	CAGNNNCTG	2 cut(s)	2676, 2903
CfoI	GCGC	3 cut(s)	31, 2826, 3468
Cfr10I	RCCGGY	1 cut(s)	175
Cfr13I	GGNCC	9 cut(s)	178, 880, 953, 1747, 2217, 3065, 3387, 3596, 3647
ClaI	ATCGAT	1 cut(s)	3324
CsiI	ACCWGGT	1 cut(s)	3351
Csp6I	GTAC	4 cut(s)	344, 1581, 3070, 3364
CviQI	GTAC	4 cut(s)	344, 1581, 3070, 3364
DraI	TTTAAA	5 cut(s)	114, 552, 2548, 3619, 3633
DraIII	CACNNNGTG	1 cut(s)	3355
Eam1104I	CTCTTC	2 cut(s)	1094, 2935
EarI	CTCTTC	2 cut(s)	1094, 2935
EciI	GGCGGA	2 cut(s)	1489, 2578
Eco130I	CCWWGG	3 cut(s)	1763, 1949, 2041
Eco31I	GGTCTC	3 cut(s)	3518, 3594, 3645
Eco32I	GATATC	2 cut(s)	1455, 3154
Eco47I	GGWCC	7 cut(s)	880, 953, 2217, 3065, 3387, 3596, 3647
Eco47III	AGCGCT	1 cut(s)	3467
Eco57I	CTGAAG	3 cut(s)	1067, 1742, 3427
Eco88I	CYCGRG	2 cut(s)	590, 1744
EcoNI	CCTNNNNNAGG	1 cut(s)	3377
EcoO109I	RGGNCCY	1 cut(s)	880
EcoRI	GAATTC	1 cut(s)	1173
EcoRII	CCWGG	5 cut(s)	955, 1558, 1906, 2581, 3351
EcoRV	GATATC	2 cut(s)	1455, 3154
EcoT14I	CCWWGG	3 cut(s)	1763, 1949, 2041
EcoT22I	ATGCAT	4 cut(s)	608, 1312, 1402, 1506
ErhI	CCWWGG	3 cut(s)	1763, 1949, 2041
FalI	AAGNNNNNCTT	2 cut(s)	1661, 1693
FaqI	GGGAC	4 cut(s)	1636, 2203, 2338, 2591
FauI	CCCGC	2 cut(s)	86, 1162
FbaI	TGATCA	1 cut(s)	937
FblI	GTMKAC	1 cut(s)	3435
Fnu4HI	GCNGC	9 cut(s)	108, 369, 372, 1167, 1988, 2881, 3301, 3461, 3464
Fsp4HI	GCNGC	9 cut(s)	108, 369, 372, 1167, 1988, 2881, 3301, 3461, 3464
FspBI	CTAG	7 cut(s)	449, 767, 981, 1950, 2472, 2663, 2858
FspI	TGCGCA	1 cut(s)	30
GlaI	GCGC	3 cut(s)	30, 2825, 3467
GluI	GCNGC	9 cut(s)	108, 369, 372, 1167, 1988, 2881, 3301, 3461, 3464
GsaI	CCCAGC	1 cut(s)	456
GsuI	CTGGAG	1 cut(s)	2192
HaeII	RGCGCY	2 cut(s)	2827, 3469
HaeIII	GGCC	6 cut(s)	179, 477, 1749, 1840, 1941, 3521
HapII	CCGG	8 cut(s)	176, 1586, 2791, 3062, 3098, 3482, 3594, 3645
HhaI	GCGC	3 cut(s)	31, 2826, 3468
Hin6I	GCGC	3 cut(s)	29, 2824, 3466
HinP1I	GCGC	3 cut(s)	29, 2824, 3466
HincII	GTYRAC	1 cut(s)	3220
HindII	GTYRAC	1 cut(s)	3220
HindIII	AAGCTT	5 cut(s)	206, 717, 2096, 2593, 3158
HpaII	CCGG	8 cut(s)	176, 1586, 2791, 3062, 3098, 3482, 3594, 3645
HphI	GGTGA	7 cut(s)	947, 1745, 3133, 3293, 3341, 3394, 3496
Hpy166II	GTNNAC	8 cut(s)	1544, 1581, 1783, 2023, 2910, 3220, 3390, 3436
Hpy8I	GTNNAC	8 cut(s)	1544, 1581, 1783, 2023, 2910, 3220, 3390, 3436
Hpy99I	CGWCG	3 cut(s)	1215, 2632, 2635
HpyCH4III	ACNGT	3 cut(s)	637, 1153, 2899
HpyCH4IV	ACGT	4 cut(s)	394, 1262, 2553, 2929
HpyF10VI	GCNNNNNNNGC	6 cut(s)	474, 1015, 1564, 1573, 1903, 3413
HpySE526I	ACGT	4 cut(s)	394, 1262, 2553, 2929
HspAI	GCGC	3 cut(s)	29, 2824, 3466
Ksp22I	TGATCA	1 cut(s)	937
LguI	GCTCTTC	1 cut(s)	1094
LmnI	GCTCC	5 cut(s)	1025, 1124, 2500, 2760, 2850
Lsp1109I	GCAGC	8 cut(s)	358, 380, 1153, 1999, 2867, 3312, 3472, 3475
MabI	ACCWGGT	1 cut(s)	3351
MaeI	CTAG	7 cut(s)	449, 767, 981, 1950, 2472, 2663, 2858
MaeII	ACGT	4 cut(s)	394, 1262, 2553, 2929
MaeIII	GTNAC	5 cut(s)	225, 1490, 2370, 2577, 2672
MfeI	CAATTG	3 cut(s)	1391, 1533, 2119
MflI	RGATCY	5 cut(s)	331, 2005, 2493, 2706, 2806
MhlI	GDGCHC	3 cut(s)	414, 1226, 1785
MlyI	GAGTC	4 cut(s)	582, 602, 1675, 2609
MmeI	TCCRAC	2 cut(s)	544, 1587
Mph1103I	ATGCAT	4 cut(s)	608, 1312, 1402, 1506
MroXI	GAANNNNTTC	5 cut(s)	621, 1080, 1632, 1809, 2088
MslI	CAYNNNNRTG	4 cut(s)	102, 601, 1098, 1442
MspA1I	CMGCKG	3 cut(s)	371, 1836, 1990
MspI	CCGG	8 cut(s)	176, 1586, 2791, 3062, 3098, 3482, 3594, 3645
MunI	CAATTG	3 cut(s)	1391, 1533, 2119
Mva1269I	GAATGC	4 cut(s)	287, 542, 2116, 3007
MvaI	CCWGG	5 cut(s)	957, 1560, 1908, 2583, 3353
MwoI	GCNNNNNNNGC	6 cut(s)	474, 1015, 1564, 1573, 1903, 3413
NciI	CCSGG	6 cut(s)	1586, 2791, 3063, 3099, 3594, 3645
NlaIV	GGNNCC	6 cut(s)	1201, 2219, 2502, 2539, 2749, 3066
NmeAIII	GCCGAG	1 cut(s)	3547
NmuCI	GTSAC	2 cut(s)	225, 2672
NsbI	TGCGCA	1 cut(s)	30
NsiI	ATGCAT	4 cut(s)	608, 1312, 1402, 1506
NspI	RCATGY	4 cut(s)	35, 344, 1353, 1404
NspV	TTCGAA	1 cut(s)	714
PaeI	GCATGC	1 cut(s)	35
PaeR7I	CTCGAG	1 cut(s)	590
PciI	ACATGT	1 cut(s)	340
PciSI	GCTCTTC	1 cut(s)	1094
PcsI	WCGNNNNNNNCGW	2 cut(s)	583, 2935
PctI	GAATGC	4 cut(s)	287, 542, 2116, 3007
PdmI	GAANNNNTTC	5 cut(s)	621, 1080, 1632, 1809, 2088
PflFI	GACNNNGTC	1 cut(s)	2899
PfoI	TCCNGGA	1 cut(s)	3097
PkrI	GCNGC	9 cut(s)	109, 370, 373, 1168, 1989, 2882, 3302, 3462, 3465
PleI	GAGTC	4 cut(s)	582, 601, 1675, 2608
PpsI	GAGTC	4 cut(s)	582, 601, 1675, 2608
PpuMI	RGGWCCY	1 cut(s)	880
PscI	ACATGT	1 cut(s)	340
PshAI	GACNNNNGTC	2 cut(s)	592, 1596
PsiI	TTATAA	2 cut(s)	974, 2430
Psp1406I	AACGTT	3 cut(s)	394, 1262, 2929
Psp5II	RGGWCCY	1 cut(s)	880
Psp6I	CCWGG	5 cut(s)	955, 1558, 1906, 2581, 3351
PspFI	CCCAGC	1 cut(s)	452
PspGI	CCWGG	5 cut(s)	955, 1558, 1906, 2581, 3351
PspN4I	GGNNCC	6 cut(s)	1201, 2219, 2502, 2539, 2749, 3066
PspPI	GGNCC	9 cut(s)	178, 880, 953, 1747, 2217, 3065, 3387, 3596, 3647
PspPPI	RGGWCCY	1 cut(s)	880
PspXI	VCTCGAGB	1 cut(s)	590
PsrI	GAACNNNNNNTAC	2 cut(s)	606, 638
PstI	CTGCAG	2 cut(s)	2391, 3181
PstNI	CAGNNNCTG	2 cut(s)	2676, 2903
PsuI	RGATCY	5 cut(s)	331, 2005, 2493, 2706, 2806
PsyI	GACNNNGTC	1 cut(s)	2899
PvuII	CAGCTG	3 cut(s)	371, 1836, 1990
RsaI	GTAC	4 cut(s)	345, 1582, 3071, 3365
RsaNI	GTAC	4 cut(s)	344, 1581, 3070, 3364
RseI	CAYNNNNRTG	4 cut(s)	102, 601, 1098, 1442
SapI	GCTCTTC	1 cut(s)	1094
SatI	GCNGC	9 cut(s)	108, 369, 372, 1167, 1988, 2881, 3301, 3461, 3464
Sau96I	GGNCC	9 cut(s)	178, 880, 953, 1747, 2217, 3065, 3387, 3596, 3647
SchI	GAGTC	4 cut(s)	582, 602, 1675, 2609
SduI	GDGCHC	3 cut(s)	414, 1226, 1785
SexAI	ACCWGGT	1 cut(s)	3351
SfcI	CTRYAG	4 cut(s)	837, 2387, 2810, 3177
Sfr274I	CTCGAG	1 cut(s)	590
SfuI	TTCGAA	1 cut(s)	714
SinI	GGWCC	7 cut(s)	880, 953, 2217, 3065, 3387, 3596, 3647
SlaI	CTCGAG	1 cut(s)	590
SmiMI	CAYNNNNRTG	4 cut(s)	102, 601, 1098, 1442
SmlI	CTYRAG	7 cut(s)	413, 541, 590, 1686, 2444, 3374, 3411
SmoI	CTYRAG	7 cut(s)	413, 541, 590, 1686, 2444, 3374, 3411
SphI	GCATGC	1 cut(s)	35
SsiI	CCGC	7 cut(s)	79, 108, 1122, 1169, 1415, 1474, 2563
SspI	AATATT	1 cut(s)	1859
SspMI	CTAG	7 cut(s)	449, 767, 981, 1950, 2472, 2663, 2858
StyI	CCWWGG	3 cut(s)	1763, 1949, 2041
TaaI	ACNGT	3 cut(s)	637, 1153, 2899
TaiI	ACGT	4 cut(s)	397, 1265, 2556, 2932
TaqII	GACCGA	2 cut(s)	2623, 3542
TauI	GCSGC	1 cut(s)	110
TscAI	CASTG	3 cut(s)	640, 2677, 2904
TseFI	GTSAC	2 cut(s)	225, 2672
TseI	GCWGC	8 cut(s)	368, 371, 1166, 1987, 2880, 3300, 3460, 3463
Tsp45I	GTSAC	2 cut(s)	225, 2672
TspGWI	ACGGA	4 cut(s)	312, 2616, 2878, 3057
TspRI	CASTG	3 cut(s)	640, 2677, 2904
Tth111I	GACNNNGTC	1 cut(s)	2899
VneI	GTGCAC	1 cut(s)	1781
VpaK11BI	GGWCC	7 cut(s)	880, 953, 2217, 3065, 3387, 3596, 3647
XagI	CCTNNNNNAGG	1 cut(s)	3377
XapI	RAATTY	5 cut(s)	1173, 1715, 2067, 2543, 3108
XbaI	TCTAGA	1 cut(s)	2857
XceI	RCATGY	4 cut(s)	35, 344, 1353, 1404
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2283
XhoI	CTCGAG	1 cut(s)	590
XmaJI	CCTAGG	1 cut(s)	1949
XmiI	GTMKAC	1 cut(s)	3435
XmnI	GAANNNNTTC	5 cut(s)	621, 1080, 1632, 1809, 2088
XspI	CTAG	7 cut(s)	449, 767, 981, 1950, 2472, 2663, 2858
Zsp2I	ATGCAT	4 cut(s)	608, 1312, 1402, 1506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.