Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004252

Physical Location & Seq

Genomic Coordinates Reverse (-)

12554168 .. 12554767

Gene Structure 600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0076800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGAACCACAAACCCAGCAACCAACCGAGGATGGAGGAAGCAACAAAGCAACCGGGAGTAGTGCTAACATGCTTTATAAGCGGAGTAGGTGGACTCCCAGTACAGATCAGATAAGAATCCTCAAGGAGCTTTTCTACAATAAGGGAGTTAGGTCCCCAACTGTAGAGCAGGTTGAGAAGATCTATCTCCAGCTGAAATGGTACGGCAAGATCGAGTTCAAGAACGTCTATTTTTGGTTCGTGAACCAAAGGGCTCGGGAGAAGCAGAAGAAGAAGTCCACTTCGGATGTTCATGTGCCCATGCAAAGATCAGGGCTTGTTGGTGATGACAATGTTGCCAATTCATCTGCATCTGCTTCTGCTTCTTCTGCTGGTGTGATGATTGCTGTTAACGGGCAGATGGAGAACTATGGTGGTTATGGATCTATGAACATGGAGATTGAAACCCTTCCTCTGTTCCCCATGCATGGTGAGGACATCTTTGGCAACATGAAGACTACTTCCGATGGAGGTGGCGGTCACGGTGGTGGCTCTCACATTTCCCTTGACCTCAGCCTTTCCTGCGAGGGCAAAGCTGGAAAAAGTTTCTGGAGCCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

199

Amino Acids

21.9

Weight (kDa)

8.89

Isoelectric Point (pI)

51.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	27 - 89	2.4e-09	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004252)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0329211 RchiOBHm_Chr5g0026901
rosa_laevigata	RLG00000005131 RLG00000020175 RLG00000021041 RLG00000029910
rosa_multiflora	Rmu_sc0000203.1_g000002 Rmu_sc0004223.1_g000010 Rmu_sc0014333.1_g000006
rosa_roxburghii	Rroxscaffold_3G00271320 Rroxscaffold_3G00271330
rosa_rugosa	Rorug01G0076600 Rorug01G0076600 Rorug01G0076700 Rorug01G0076800 Rorug01G0076900 Rorug01G0077000 Rorug01G0077100 Rorug06G0447000
rosa_samantha	Rh1AG096000 Rh1AG096100 Rh1BG076500 Rh1BG076600 Rh1BG076800 Rh1BG076900 Rh1CG092800 Rh1DG099400 Rh5AG189400 Rh5CG206400 Rh5DG188600 Rh7BG050000
rosa_wichuraiana	Rw1G007440 Rw5G017220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	78
Acc36I	ACCTGC	1 cut(s)	160
AciI	CCGC	3 cut(s)	82, 516, 595
AclWI	GGATC	1 cut(s)	430
AfaI	GTAC	2 cut(s)	103, 203
AfiI	CCNNNNNNNGG	1 cut(s)	467
AgsI	TTSAA	2 cut(s)	220, 443
AleI	CACNNNNGTG	1 cut(s)	525
AluBI	AGCT	3 cut(s)	130, 193, 575
AluI	AGCT	3 cut(s)	130, 193, 575
AlwI	GGATC	1 cut(s)	430
Ama87I	CYCGRG	1 cut(s)	255
Asp700I	GAANNNNTTC	1 cut(s)	447
AspS9I	GGNCC	1 cut(s)	153
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	2 cut(s)	335, 482
AvaI	CYCGRG	1 cut(s)	255
AvaII	GGWCC	1 cut(s)	153
BaeGI	GKGCMC	1 cut(s)	300
BanII	GRGCYC	1 cut(s)	256
BbsI	GAAGAC	1 cut(s)	500
BbvCI	CCTCAGC	1 cut(s)	551
BccI	CCATC	3 cut(s)	26, 394, 500
BceAI	ACGGC	1 cut(s)	220
BcnI	CCSGG	1 cut(s)	55
BfmI	CTRYAG	1 cut(s)	162
BfuAI	ACCTGC	1 cut(s)	160
BglII	AGATCT	1 cut(s)	180
BisI	GCNGC	1 cut(s)	595
BlsI	GCNGC	1 cut(s)	596
Bme1390I	CCNGG	1 cut(s)	55
Bme18I	GGWCC	1 cut(s)	153
BmeT110I	CYCGRG	1 cut(s)	255
BmgT120I	GGNCC	1 cut(s)	153
BmiI	GGNNCC	3 cut(s)	6, 155, 593
BmrFI	CCNGG	1 cut(s)	55
BmrI	ACTGGG	1 cut(s)	93
BmsI	GCATC	1 cut(s)	359
BmuI	ACTGGG	1 cut(s)	93
BpiI	GAAGAC	1 cut(s)	500
BpmI	CTGGAG	1 cut(s)	173
Bpu10I	CCTNAGC	1 cut(s)	551
BpuEI	CTTGAG	1 cut(s)	107
BpuMI	CCSGG	1 cut(s)	55
BsaBI	GATNNNNATC	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	1 cut(s)	467
Bse1I	ACTGG	1 cut(s)	99
Bse8I	GATNNNNATC	1 cut(s)	116
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	2 cut(s)	37, 292
BseJI	GATNNNNATC	1 cut(s)	116
BseLI	CCNNNNNNNGG	1 cut(s)	467
BseMII	CTCAG	1 cut(s)	565
BseNI	ACTGG	1 cut(s)	99
BseSI	GKGCMC	1 cut(s)	300
BseYI	CCCAGC	1 cut(s)	15
BsiHKCI	CYCGRG	1 cut(s)	255
BsiSI	CCGG	1 cut(s)	54
BslFI	GGGAC	1 cut(s)	139
BslI	CCNNNNNNNGG	1 cut(s)	467
BsmFI	GGGAC	1 cut(s)	139
BsoBI	CYCGRG	1 cut(s)	255
Bsp1286I	GDGCHC	2 cut(s)	256, 300
Bsp143I	GATC	5 cut(s)	106, 180, 210, 308, 422
BspACI	CCGC	3 cut(s)	82, 516, 595
BspCNI	CTCAG	1 cut(s)	564
BspLI	GGNNCC	3 cut(s)	6, 155, 593
BspMI	ACCTGC	1 cut(s)	160
BspPI	GGATC	1 cut(s)	430
BsrI	ACTGG	1 cut(s)	99
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	5 cut(s)	106, 180, 210, 308, 422
Bst4CI	ACNGT	2 cut(s)	163, 524
BstDEI	CTNAG	1 cut(s)	551
BstF5I	GGATG	2 cut(s)	37, 292
BstKTI	GATC	5 cut(s)	109, 183, 213, 311, 425
BstMBI	GATC	5 cut(s)	106, 180, 210, 308, 422
BstMWI	GCNNNNNNNGC	3 cut(s)	79, 368, 561
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	1 cut(s)	53
BstSFI	CTRYAG	1 cut(s)	162
BstSLI	GKGCMC	1 cut(s)	300
BstV2I	GAAGAC	1 cut(s)	500
BstX2I	RGATCY	2 cut(s)	180, 422
BstYI	RGATCY	2 cut(s)	180, 422
BtsCI	GGATG	2 cut(s)	37, 292
BveI	ACCTGC	1 cut(s)	160
Cfr13I	GGNCC	1 cut(s)	153
Csp6I	GTAC	2 cut(s)	102, 202
CviAII	CATG	7 cut(s)	70, 293, 301, 433, 463, 467, 490
CviJI	RGCY	8 cut(s)	130, 193, 254, 316, 531, 555, 575, 594
CviKI_1	RGCY	8 cut(s)	130, 193, 254, 316, 531, 555, 575, 594
CviQI	GTAC	2 cut(s)	102, 202
DdeI	CTNAG	1 cut(s)	551
DpnI	GATC	5 cut(s)	108, 182, 212, 310, 424
DpnII	GATC	5 cut(s)	106, 180, 210, 308, 422
Eco24I	GRGCYC	1 cut(s)	256
Eco47I	GGWCC	1 cut(s)	153
Eco88I	CYCGRG	1 cut(s)	255
EcoO109I	RGGNCCY	1 cut(s)	153
EcoT22I	ATGCAT	1 cut(s)	468
EcoT38I	GRGCYC	1 cut(s)	256
FaeI	CATG	7 cut(s)	73, 296, 304, 436, 466, 470, 493
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	7 cut(s)	69, 292, 300, 432, 462, 466, 489
Fnu4HI	GCNGC	1 cut(s)	595
FokI	GGATG	2 cut(s)	44, 299
FriOI	GRGCYC	1 cut(s)	256
Fsp4HI	GCNGC	1 cut(s)	595
GluI	GCNGC	1 cut(s)	595
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	1 cut(s)	173
HapII	CCGG	1 cut(s)	54
Hin1II	CATG	7 cut(s)	73, 296, 304, 436, 466, 470, 493
HincII	GTYRAC	1 cut(s)	391
HindII	GTYRAC	1 cut(s)	391
HinfI	GANTC	2 cut(s)	94, 117
HpaI	GTTAAC	1 cut(s)	391
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	2 cut(s)	335, 482
Hpy166II	GTNNAC	4 cut(s)	93, 244, 279, 391
Hpy188I	TCNGA	3 cut(s)	111, 286, 505
Hpy188III	TCNNGA	4 cut(s)	220, 241, 257, 589
Hpy8I	GTNNAC	4 cut(s)	93, 244, 279, 391
HpyAV	CCTTC	1 cut(s)	458
HpyCH4III	ACNGT	2 cut(s)	163, 524
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	3 cut(s)	304, 350, 466
HpyF10VI	GCNNNNNNNGC	3 cut(s)	79, 368, 561
HpyF3I	CTNAG	1 cut(s)	551
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	7 cut(s)	73, 296, 304, 436, 466, 470, 493
KspAI	GTTAAC	1 cut(s)	391
Kzo9I	GATC	5 cut(s)	106, 180, 210, 308, 422
LmnI	GCTCC	2 cut(s)	127, 591
LweI	GCATC	1 cut(s)	359
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	1 cut(s)	518
MalI	GATC	5 cut(s)	108, 182, 212, 310, 424
MboI	GATC	5 cut(s)	106, 180, 210, 308, 422
MboII	GAAGA	5 cut(s)	190, 280, 283, 357, 505
MflI	RGATCY	2 cut(s)	180, 422
MhlI	GDGCHC	2 cut(s)	256, 300
MluCI	AATT	1 cut(s)	340
MlyI	GAGTC	1 cut(s)	88
MnlI	CCTC	8 cut(s)	22, 29, 131, 462, 466, 503, 559, 560
Mph1103I	ATGCAT	1 cut(s)	468
MroXI	GAANNNNTTC	1 cut(s)	447
MseI	TTAA	1 cut(s)	390
MslI	CAYNNNNRTG	1 cut(s)	525
MspA1I	CMGCKG	2 cut(s)	193, 597
MspI	CCGG	1 cut(s)	54
MspR9I	CCNGG	1 cut(s)	55
MwoI	GCNNNNNNNGC	3 cut(s)	79, 368, 561
NciI	CCSGG	1 cut(s)	55
NdeII	GATC	5 cut(s)	106, 180, 210, 308, 422
NlaIII	CATG	7 cut(s)	73, 296, 304, 436, 466, 470, 493
NlaIV	GGNNCC	3 cut(s)	6, 155, 593
NmuCI	GTSAC	1 cut(s)	518
NsiI	ATGCAT	1 cut(s)	468
NspI	RCATGY	1 cut(s)	73
OliI	CACNNNNGTG	1 cut(s)	525
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PdmI	GAANNNNTTC	1 cut(s)	447
PfeI	GAWTC	1 cut(s)	117
PkrI	GCNGC	1 cut(s)	596
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
PpuMI	RGGWCCY	1 cut(s)	153
PsiI	TTATAA	1 cut(s)	78
Psp5II	RGGWCCY	1 cut(s)	153
PspFI	CCCAGC	1 cut(s)	15
PspN4I	GGNNCC	3 cut(s)	6, 155, 593
PspPI	GGNCC	1 cut(s)	153
PspPPI	RGGWCCY	1 cut(s)	153
PsuI	RGATCY	2 cut(s)	180, 422
PvuII	CAGCTG	1 cut(s)	193
RsaI	GTAC	2 cut(s)	103, 203
RsaNI	GTAC	2 cut(s)	102, 202
RseI	CAYNNNNRTG	1 cut(s)	525
SaqAI	TTAA	1 cut(s)	390
SatI	GCNGC	1 cut(s)	595
Sau3AI	GATC	5 cut(s)	106, 180, 210, 308, 422
Sau96I	GGNCC	1 cut(s)	153
SchI	GAGTC	1 cut(s)	88
ScrFI	CCNGG	1 cut(s)	55
SduI	GDGCHC	2 cut(s)	256, 300
SetI	ASST	9 cut(s)	92, 132, 155, 174, 195, 228, 514, 552, 577
SfaNI	GCATC	1 cut(s)	359
SfcI	CTRYAG	1 cut(s)	162
SinI	GGWCC	1 cut(s)	153
SmiMI	CAYNNNNRTG	1 cut(s)	525
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	1 cut(s)	340
SsiI	CCGC	3 cut(s)	82, 516, 595
StyD4I	CCNGG	1 cut(s)	53
TaaI	ACNGT	2 cut(s)	163, 524
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	1 cut(s)	213
TasI	AATT	1 cut(s)	340
TatI	WGTACW	1 cut(s)	101
TauI	GCSGC	1 cut(s)	597
TfiI	GAWTC	1 cut(s)	117
Tru1I	TTAA	1 cut(s)	390
Tru9I	TTAA	1 cut(s)	390
TseFI	GTSAC	1 cut(s)	518
Tsp45I	GTSAC	1 cut(s)	518
TspDTI	ATGAA	4 cut(s)	281, 333, 443, 506
VpaK11BI	GGWCC	1 cut(s)	153
XceI	RCATGY	1 cut(s)	73
XmnI	GAANNNNTTC	1 cut(s)	447
Zsp2I	ATGCAT	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.