RLG00000009283

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0008178
Physical Location & Seq
Reverse (-)
50237852 .. 50238328
477 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009283

Sequence Viewer

Length: 426 bp
ATGGGAGACAGGTCTGGGTCTTCCCAGACAGTGCATTACATTATGGCTTCTGGTAATGATTCTAGTTTGATGGAAAACTCCCCCATATCAATCGAGTCCATCAGATTGCCCGGAATGCCTGGTTCTCATGGAGGAATTGAGGGAGACTTCGTTTCTCTCCTGTTAGATGATTTCCAAGATAACCTGCAGATTATCACCTTGGAATCTCGACATTGGTGGCGGTCCCATTTCACAGGCGAGAGTAGGAACGGTTGCAAGAAGATTCGATGCGGTTACTCGCATGAAGTAACTGACCCTATTTTGCAGGGGTGGACAAGCGATGCTGGTTACACCGCGGTTGGTACAGGACAGCTGTCCACAGCTTTGTTTTTGGGTTGGAAAGAACGAATGGGCCTATTGTTGTCCAGAATGGGTCTTTGGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

15.54

Weight (kDa)

5.65

Isoelectric Point (pI)

48.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 192
AccII CGCG 1 cut(s) 335
AciI CCGC 4 cut(s) 220, 270, 333, 335
AfaI GTAC 1 cut(s) 343
AjnI CCWGG 1 cut(s) 118
AjuI GAANNNNNNNTTGG 1 cut(s) 400
AluBI AGCT 2 cut(s) 352, 362
AluI AGCT 2 cut(s) 352, 362
Alw26I GTCTC 1 cut(s) 138
AoxI GGCC 1 cut(s) 391
AspS9I GGNCC 2 cut(s) 222, 391
AsuC2I CCSGG 1 cut(s) 111
AsuHPI GGTGA 1 cut(s) 187
AvaII GGWCC 1 cut(s) 222
BbsI GAAGAC 1 cut(s) 12
BccI CCATC 2 cut(s) 64, 107
BciT130I CCWGG 1 cut(s) 120
BcnI CCSGG 1 cut(s) 111
BcoDI GTCTC 1 cut(s) 138
BfaI CTAG 1 cut(s) 63
BfmI CTRYAG 1 cut(s) 185
BfuAI ACCTGC 1 cut(s) 192
Bme1390I CCNGG 2 cut(s) 111, 120
Bme18I GGWCC 1 cut(s) 222
BmgT120I GGNCC 2 cut(s) 222, 391
BmiI GGNNCC 1 cut(s) 224
BmrFI CCNGG 2 cut(s) 111, 120
BmsI GCATC 2 cut(s) 257, 310
BoxI GACNNNNGTC 1 cut(s) 352
BpiI GAAGAC 1 cut(s) 12
BpuMI CCSGG 1 cut(s) 111
BsaJI CCNNGG 2 cut(s) 198, 333
BsaXI ACNNNNNCTCC 2 cut(s) 135, 165
BseBI CCWGG 1 cut(s) 120
BseDI CCNNGG 2 cut(s) 198, 333
Bsh1236I CGCG 1 cut(s) 335
BshFI GGCC 1 cut(s) 393
BsiSI CCGG 1 cut(s) 111
BslFI GGGAC 1 cut(s) 208
BsmAI GTCTC 1 cut(s) 138
BsmFI GGGAC 1 cut(s) 208
BsmI GAATGC 1 cut(s) 120
BsnI GGCC 1 cut(s) 393
BspACI CCGC 4 cut(s) 220, 270, 333, 335
BspANI GGCC 1 cut(s) 393
BspFNI CGCG 1 cut(s) 335
BspLI GGNNCC 1 cut(s) 224
BspMAI CTGCAG 1 cut(s) 189
BspMI ACCTGC 1 cut(s) 192
BssECI CCNNGG 2 cut(s) 198, 333
BssT1I CCWWGG 1 cut(s) 198
Bst2UI CCWGG 1 cut(s) 120
Bst4CI ACNGT 2 cut(s) 31, 251
BstDSI CCRYGG 1 cut(s) 333
BstFNI CGCG 1 cut(s) 335
BstMAI GTCTC 1 cut(s) 138
BstMWI GCNNNNNNNGC 1 cut(s) 115
BstNI CCWGG 1 cut(s) 120
BstPAI GACNNNNGTC 1 cut(s) 352
BstSCI CCNGG 2 cut(s) 109, 118
BstSFI CTRYAG 1 cut(s) 185
BstUI CGCG 1 cut(s) 335
BstV2I GAAGAC 1 cut(s) 12
BsuRI GGCC 1 cut(s) 393
BtgI CCRYGG 1 cut(s) 333
BtgZI GCGATG 1 cut(s) 333
BtsIMutI CAGTG 1 cut(s) 36
BveI ACCTGC 1 cut(s) 192
Cfr13I GGNCC 2 cut(s) 222, 391
Cfr42I CCGCGG 1 cut(s) 336
Csp6I GTAC 1 cut(s) 342
CviAII CATG 2 cut(s) 128, 281
CviJI RGCY 4 cut(s) 47, 352, 362, 393
CviKI_1 RGCY 4 cut(s) 47, 352, 362, 393
CviQI GTAC 1 cut(s) 342
Eco130I CCWWGG 1 cut(s) 198
Eco47I GGWCC 1 cut(s) 222
EcoRII CCWGG 1 cut(s) 118
EcoT14I CCWWGG 1 cut(s) 198
ErhI CCWWGG 1 cut(s) 198
FaeI CATG 2 cut(s) 131, 284
FaiI YATR 4 cut(s) 44, 86, 129, 282
FaqI GGGAC 1 cut(s) 208
FatI CATG 2 cut(s) 127, 280
FspBI CTAG 1 cut(s) 63
HaeIII GGCC 1 cut(s) 393
HapII CCGG 1 cut(s) 111
Hin1II CATG 2 cut(s) 131, 284
HinfI GANTC 4 cut(s) 59, 95, 203, 262
HpaII CCGG 1 cut(s) 111
HphI GGTGA 1 cut(s) 187
Hpy166II GTNNAC 2 cut(s) 312, 357
Hpy188I TCNGA 1 cut(s) 104
Hpy188III TCNNGA 3 cut(s) 207, 405, 423
Hpy8I GTNNAC 2 cut(s) 312, 357
HpyCH4III ACNGT 2 cut(s) 31, 251
HpyCH4V TGCA 4 cut(s) 34, 187, 255, 304
HpyF10VI GCNNNNNNNGC 1 cut(s) 115
Hsp92II CATG 2 cut(s) 131, 284
KspI CCGCGG 1 cut(s) 336
LweI GCATC 2 cut(s) 257, 310
MaeI CTAG 1 cut(s) 63
MaeIII GTNAC 3 cut(s) 272, 286, 326
MboII GAAGA 2 cut(s) 12, 271
MluCI AATT 1 cut(s) 135
MlyI GAGTC 1 cut(s) 104
MmeI TCCRAC 1 cut(s) 356
MnlI CCTC 2 cut(s) 125, 133
MspA1I CMGCKG 2 cut(s) 335, 352
MspI CCGG 1 cut(s) 111
MspR9I CCNGG 2 cut(s) 111, 120
Mva1269I GAATGC 1 cut(s) 120
MvaI CCWGG 1 cut(s) 120
MvnI CGCG 1 cut(s) 335
MwoI GCNNNNNNNGC 1 cut(s) 115
NciI CCSGG 1 cut(s) 111
NlaIII CATG 2 cut(s) 131, 284
NlaIV GGNNCC 1 cut(s) 224
PctI GAATGC 1 cut(s) 120
PfeI GAWTC 3 cut(s) 59, 203, 262
PleI GAGTC 1 cut(s) 103
PpsI GAGTC 1 cut(s) 103
PshAI GACNNNNGTC 1 cut(s) 352
Psp6I CCWGG 1 cut(s) 118
PspGI CCWGG 1 cut(s) 118
PspN4I GGNNCC 1 cut(s) 224
PspPI GGNCC 2 cut(s) 222, 391
PstI CTGCAG 1 cut(s) 189
PvuII CAGCTG 1 cut(s) 352
RsaI GTAC 1 cut(s) 343
RsaNI GTAC 1 cut(s) 342
SacII CCGCGG 1 cut(s) 336
Sau96I GGNCC 2 cut(s) 222, 391
SchI GAGTC 1 cut(s) 104
ScrFI CCNGG 2 cut(s) 111, 120
SetI ASST 5 cut(s) 14, 186, 200, 354, 364
SfaNI GCATC 2 cut(s) 257, 310
SfcI CTRYAG 1 cut(s) 185
Sfr303I CCGCGG 1 cut(s) 336
SgrBI CCGCGG 1 cut(s) 336
SinI GGWCC 1 cut(s) 222
Sse9I AATT 1 cut(s) 135
SsiI CCGC 4 cut(s) 220, 270, 333, 335
SspMI CTAG 1 cut(s) 63
StyD4I CCNGG 2 cut(s) 109, 118
StyI CCWWGG 1 cut(s) 198
TaaI ACNGT 2 cut(s) 31, 251
TaqI TCGA 3 cut(s) 93, 208, 265
TasI AATT 1 cut(s) 135
TfiI GAWTC 3 cut(s) 59, 203, 262
TscAI CASTG 1 cut(s) 36
TspDTI ATGAA 1 cut(s) 297
TspRI CASTG 1 cut(s) 36
VpaK11BI GGWCC 1 cut(s) 222
XspI CTAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.