Rh1CG328700

Coiled-coil domain-containing protein 94 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0008178
Physical Location & Seq
Reverse (-)
60255245 .. 60256922
1678 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG328700.1

Sequence Viewer

Length: 429 bp
ATGGTAAGAGGACCAAGAGGGAGGTCATCGGGCTCAAAGTGGAGGGTCCGAAGATCAGAATTAGAGCTCTGGTCGACGGCGGAGGTGAAATCTGCTTTGGTCGAGAGCAGCGGAGGCGCTCATAGGGCAAAACCATTTGGGTTCTACGGACGAAAAGAAAAAGAGAGGAGACAAAAGAACAAAAACAAAAAAGCAAGAAGAGAACAGGGAAGAAGGGAAAAAAAGAAAAGGGGGGAGAGGAAGAACGAAAGAAAGAAAAGTAGTGGCTCTCCCTCTTGGTATTTGATTTTATGTACTGCAAATCATCTATTGGAATTGGGTTTATCACATGACTATGTGGTGGAGGCCGGGGCTACACGAAATTTTGAACCTTGGCGTAATGAGGATGAGGAAGCGGATGAGGAGAAGCAGAAGAGGGAGATGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF572

Protein Analysis

142

Amino Acids

16.61

Weight (kDa)

10.24

Isoelectric Point (pI)

69.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Saf4_Yju2 PF04502 110 - 140 3e-06 Saf4/Yju2 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 74
AciI CCGC 3 cut(s) 80, 111, 395
AcsI RAATTY 1 cut(s) 361
AfaI GTAC 1 cut(s) 295
AgsI TTSAA 1 cut(s) 368
AjuI GAANNNNNNNTTGG 2 cut(s) 80, 112
AluBI AGCT 1 cut(s) 67
AluI AGCT 1 cut(s) 67
Alw21I GWGCWC 1 cut(s) 69
Alw26I GTCTC 1 cut(s) 163
AoxI GGCC 1 cut(s) 345
ApeKI GCWGC 1 cut(s) 108
ApoI RAATTY 1 cut(s) 361
AspLEI GCGC 1 cut(s) 119
AspS9I GGNCC 2 cut(s) 11, 46
AsuC2I CCSGG 1 cut(s) 349
AsuHPI GGTGA 1 cut(s) 97
AvaII GGWCC 2 cut(s) 11, 46
BanII GRGCYC 2 cut(s) 35, 69
Bbv12I GWGCWC 1 cut(s) 69
BbvI GCAGC 1 cut(s) 120
BceAI ACGGC 1 cut(s) 93
BcnI CCSGG 1 cut(s) 349
BcoDI GTCTC 1 cut(s) 163
BfoI RGCGCY 1 cut(s) 120
BisI GCNGC 1 cut(s) 109
BlsI GCNGC 1 cut(s) 110
Bme1390I CCNGG 1 cut(s) 349
Bme18I GGWCC 2 cut(s) 11, 46
BmgT120I GGNCC 2 cut(s) 11, 46
BmiI GGNNCC 1 cut(s) 47
BmrFI CCNGG 1 cut(s) 349
BmsI GCATC 1 cut(s) 411
BpuMI CCSGG 1 cut(s) 349
BsaJI CCNNGG 2 cut(s) 348, 371
BseDI CCNNGG 2 cut(s) 348, 371
BseGI GGATG 2 cut(s) 391, 403
BseRI GAGGAG 2 cut(s) 181, 416
BseXI GCAGC 1 cut(s) 120
BshFI GGCC 1 cut(s) 347
BsiHKAI GWGCWC 1 cut(s) 69
BsiSI CCGG 1 cut(s) 348
BsmAI GTCTC 1 cut(s) 163
BsnI GGCC 1 cut(s) 347
Bsp1286I GDGCHC 2 cut(s) 35, 69
Bsp143I GATC 1 cut(s) 53
BspACI CCGC 3 cut(s) 80, 111, 395
BspANI GGCC 1 cut(s) 347
BspLI GGNNCC 1 cut(s) 47
BssECI CCNNGG 2 cut(s) 348, 371
BssMI GATC 1 cut(s) 53
BssT1I CCWWGG 1 cut(s) 371
Bst6I CTCTTC 2 cut(s) 193, 407
BstF5I GGATG 2 cut(s) 391, 403
BstH2I RGCGCY 1 cut(s) 120
BstHHI GCGC 1 cut(s) 119
BstKTI GATC 1 cut(s) 56
BstMAI GTCTC 1 cut(s) 163
BstMBI GATC 1 cut(s) 53
BstMWI GCNNNNNNNGC 2 cut(s) 114, 125
BstSCI CCNGG 1 cut(s) 347
BstV1I GCAGC 1 cut(s) 120
BsuRI GGCC 1 cut(s) 347
BtsCI GGATG 2 cut(s) 391, 403
CfoI GCGC 1 cut(s) 119
Cfr13I GGNCC 2 cut(s) 11, 46
Csp6I GTAC 1 cut(s) 294
CviAII CATG 2 cut(s) 329, 426
CviJI RGCY 5 cut(s) 33, 67, 267, 347, 353
CviKI_1 RGCY 5 cut(s) 33, 67, 267, 347, 353
CviQI GTAC 1 cut(s) 294
DpnI GATC 1 cut(s) 55
DpnII GATC 1 cut(s) 53
Eam1104I CTCTTC 2 cut(s) 193, 407
EarI CTCTTC 2 cut(s) 193, 407
EciI GGCGGA 1 cut(s) 95
Ecl136II GAGCTC 1 cut(s) 67
Eco130I CCWWGG 1 cut(s) 371
Eco24I GRGCYC 2 cut(s) 35, 69
Eco47I GGWCC 2 cut(s) 11, 46
Eco53kI GAGCTC 1 cut(s) 67
EcoICRI GAGCTC 1 cut(s) 67
EcoT14I CCWWGG 1 cut(s) 371
EcoT38I GRGCYC 2 cut(s) 35, 69
ErhI CCWWGG 1 cut(s) 371
FaeI CATG 2 cut(s) 332, 429
FaiI YATR 5 cut(s) 123, 292, 330, 336, 427
FatI CATG 2 cut(s) 328, 425
FblI GTMKAC 1 cut(s) 74
Fnu4HI GCNGC 1 cut(s) 109
FokI GGATG 2 cut(s) 398, 410
FriOI GRGCYC 2 cut(s) 35, 69
Fsp4HI GCNGC 1 cut(s) 109
GlaI GCGC 1 cut(s) 118
GluI GCNGC 1 cut(s) 109
HaeII RGCGCY 1 cut(s) 120
HaeIII GGCC 1 cut(s) 347
HapII CCGG 1 cut(s) 348
HhaI GCGC 1 cut(s) 119
Hin1II CATG 2 cut(s) 332, 429
Hin6I GCGC 1 cut(s) 117
HinP1I GCGC 1 cut(s) 117
HincII GTYRAC 1 cut(s) 75
HindII GTYRAC 1 cut(s) 75
HpaII CCGG 1 cut(s) 348
HphI GGTGA 1 cut(s) 97
Hpy166II GTNNAC 1 cut(s) 75
Hpy188I TCNGA 2 cut(s) 50, 58
Hpy188III TCNNGA 1 cut(s) 103
Hpy8I GTNNAC 1 cut(s) 75
Hpy99I CGWCG 1 cut(s) 79
HpyAV CCTTC 1 cut(s) 207
HpyCH4V TGCA 1 cut(s) 299
HpyF10VI GCNNNNNNNGC 2 cut(s) 114, 125
Hsp92II CATG 2 cut(s) 332, 429
HspAI GCGC 1 cut(s) 117
Kzo9I GATC 1 cut(s) 53
LpnPI CCDG 3 cut(s) 55, 191, 361
Lsp1109I GCAGC 1 cut(s) 120
LweI GCATC 1 cut(s) 411
MalI GATC 1 cut(s) 55
MboI GATC 1 cut(s) 53
MboII GAAGA 5 cut(s) 63, 210, 222, 253, 424
MhlI GDGCHC 2 cut(s) 35, 69
MluCI AATT 3 cut(s) 59, 314, 361
MslI CAYNNNNRTG 1 cut(s) 333
MspA1I CMGCKG 1 cut(s) 111
MspI CCGG 1 cut(s) 348
MspR9I CCNGG 1 cut(s) 349
MwoI GCNNNNNNNGC 2 cut(s) 114, 125
NciI CCSGG 1 cut(s) 349
NdeII GATC 1 cut(s) 53
NlaIII CATG 2 cut(s) 332, 429
NlaIV GGNNCC 1 cut(s) 47
PkrI GCNGC 1 cut(s) 110
Psp124BI GAGCTC 1 cut(s) 69
PspN4I GGNNCC 1 cut(s) 47
PspPI GGNCC 2 cut(s) 11, 46
RsaI GTAC 1 cut(s) 295
RsaNI GTAC 1 cut(s) 294
RseI CAYNNNNRTG 1 cut(s) 333
SacI GAGCTC 1 cut(s) 69
SalI GTCGAC 1 cut(s) 73
SatI GCNGC 1 cut(s) 109
Sau3AI GATC 1 cut(s) 53
Sau96I GGNCC 2 cut(s) 11, 46
ScrFI CCNGG 1 cut(s) 349
SduI GDGCHC 2 cut(s) 35, 69
SetI ASST 4 cut(s) 26, 69, 87, 373
SfaNI GCATC 1 cut(s) 411
SinI GGWCC 2 cut(s) 11, 46
SmiMI CAYNNNNRTG 1 cut(s) 333
Sse9I AATT 3 cut(s) 59, 314, 361
SsiI CCGC 3 cut(s) 80, 111, 395
SstI GAGCTC 1 cut(s) 69
StyD4I CCNGG 1 cut(s) 347
StyI CCWWGG 1 cut(s) 371
TaqI TCGA 2 cut(s) 74, 102
TasI AATT 3 cut(s) 59, 314, 361
TatI WGTACW 1 cut(s) 293
TseI GCWGC 1 cut(s) 108
TspGWI ACGGA 1 cut(s) 162
VpaK11BI GGWCC 2 cut(s) 11, 46
XapI RAATTY 1 cut(s) 361
XmiI GTMKAC 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.