Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008178

Physical Location & Seq

Genomic Coordinates Forward (+)

11717090 .. 11720171

Gene Structure 3082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0087700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGTTGGCTACTAACCCTAGCCTCTTCTTCCCCTCCAAACCCTCCATTCCCCTCCGCTGCCGCGCCGCCGCCGGCGACCCTCCTCGAGGCGCCGCATTCCCTCGCCTGGTCCAGTTTCCATTCGCCGCCTCCGACGTCGCCTCCGTCAGCGGCCGAATCGGCCTTGACACCGAACCCGACGGCGGCGGCGCGGCTCGGATCCGCGGCGGCAGCTCCGGCGGTGCTATTAAGGTGACGGCGAAGGAGCCGAAGTGGTCGAGGGATAGAGAGAGTTACTTGGTCGACGATGGAGACGCGCTGCCTCTCCCCATGACTTATCCAGATACGGCTCCGGTGACGCCGGAGGTGATTGACCAGAGGCTCCGGTGCGACCCTGTAGTCGAGGATTGCAAGATAGTAGTGTATGAATGGACAGGAAAGTGTAGGAGTTGCCAGGGCTCAGGATACGCTAGTTATTATAATAAAAGAGGGAAGGAAAATGTCTGCAAATGCATACCTTGCCAAGGAATCGGATATGTACAAAAGATAACAACTCGCACCAACATTGATGTAATGGAAGATTTGGATAACGGAAAACCACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000782 GO:0000783 GO:0000784 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008301 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016043 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0032991 GO:0032993 GO:0033993 GO:0034641 GO:0042162 GO:0042221 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097305 GO:0098687 GO:1901360 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

194

Amino Acids

20.91

Weight (kDa)

8.08

Isoelectric Point (pI)

28.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008178)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0147181
rosa_laevigata	RLG00000009283 RLG00000009752
rosa_roxburghii	Rroxscaffold_4G00314460
rosa_rugosa	Rorug02G0025400 Rorug06G0087700
rosa_samantha	Rh1CG328700 Rh2CG237800 Rh2DG241000 Rh2DG693200 Rh3DG361200 Rh4AG247200 Rh4AG247900 Rh4CG260600 Rh4DG044600 Rh4DG247900 Rh5AG399200 Rh5BG270900 Rh6AG169600 Rh6AG189100 Rh6BG136000 Rh6BG192300 Rh7AG145600 Rh7CG149600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	459
AasI	GACNNNNNNGTC	1 cut(s)	377
AatII	GACGTC	1 cut(s)	138
AbsI	CCTCGAGG	1 cut(s)	84
AccB1I	GGYRCC	1 cut(s)	89
AccI	GTMKAC	1 cut(s)	282
AccII	CGCG	4 cut(s)	63, 191, 204, 296
AclWI	GGATC	2 cut(s)	193, 206
AcoI	YGGCCR	1 cut(s)	151
AcyI	GRCGYC	3 cut(s)	90, 135, 338
AfaI	GTAC	1 cut(s)	519
AfiI	CCNNNNNNNGG	4 cut(s)	86, 106, 182, 503
AjnI	CCWGG	2 cut(s)	105, 432
AluBI	AGCT	1 cut(s)	213
AluI	AGCT	1 cut(s)	213
Alw26I	GTCTC	1 cut(s)	285
AlwI	GGATC	2 cut(s)	193, 206
Ama87I	CYCGRG	1 cut(s)	84
AoxI	GGCC	2 cut(s)	151, 160
ApeKI	GCWGC	3 cut(s)	57, 210, 298
AspLEI	GCGC	4 cut(s)	65, 92, 191, 298
AspS9I	GGNCC	1 cut(s)	109
AsuHPI	GGTGA	3 cut(s)	244, 346, 358
AvaI	CYCGRG	1 cut(s)	84
AvaII	GGWCC	1 cut(s)	109
BaeI	ACNNNNGTAYC	2 cut(s)	436, 469
BamHI	GGATCC	1 cut(s)	198
BanI	GGYRCC	1 cut(s)	89
BanII	GRGCYC	1 cut(s)	440
BbvI	GCAGC	3 cut(s)	44, 222, 285
BccI	CCATC	1 cut(s)	281
BceAI	ACGGC	3 cut(s)	196, 252, 342
BciT130I	CCWGG	2 cut(s)	107, 434
BciVI	GTATCC	1 cut(s)	437
BcoDI	GTCTC	1 cut(s)	285
BfaI	CTAG	2 cut(s)	18, 450
BfmI	CTRYAG	1 cut(s)	375
BfoI	RGCGCY	1 cut(s)	93
BfuI	GTATCC	1 cut(s)	437
BglI	GCCNNNNNGGC	1 cut(s)	159
Bme1390I	CCNGG	2 cut(s)	107, 434
Bme18I	GGWCC	1 cut(s)	109
BmeT110I	CYCGRG	1 cut(s)	84
BmgT120I	GGNCC	1 cut(s)	109
BmiI	GGNNCC	5 cut(s)	91, 200, 246, 330, 362
BmrFI	CCNGG	2 cut(s)	107, 434
Bpu10I	CCTNAGC	1 cut(s)	439
BsaHI	GRCGYC	3 cut(s)	90, 135, 338
BsaJI	CCNNGG	3 cut(s)	202, 433, 502
BsaWI	WCCGGW	2 cut(s)	331, 363
BsaXI	ACNNNNNCTCC	4 cut(s)	125, 155, 236, 266
Bsc4I	CCNNNNNNNGG	4 cut(s)	86, 106, 182, 503
Bse118I	RCCGGY	1 cut(s)	71
Bse1I	ACTGG	1 cut(s)	112
BseBI	CCWGG	2 cut(s)	107, 434
BseDI	CCNNGG	3 cut(s)	202, 433, 502
BseLI	CCNNNNNNNGG	4 cut(s)	86, 106, 182, 503
BseMII	CTCAG	1 cut(s)	453
BseNI	ACTGG	1 cut(s)	112
BseRI	GAGGAG	1 cut(s)	72
BseX3I	CGGCCG	1 cut(s)	151
BseXI	GCAGC	3 cut(s)	44, 222, 285
Bsh1236I	CGCG	4 cut(s)	63, 191, 204, 296
Bsh1285I	CGRYCG	1 cut(s)	154
BshFI	GGCC	2 cut(s)	153, 162
BshNI	GGYRCC	1 cut(s)	89
BsiEI	CGRYCG	1 cut(s)	154
BsiHKCI	CYCGRG	1 cut(s)	84
BsiSI	CCGG	5 cut(s)	72, 216, 332, 341, 364
BslI	CCNNNNNNNGG	4 cut(s)	86, 106, 182, 503
BsmAI	GTCTC	1 cut(s)	285
BsmBI	CGTCTC	1 cut(s)	285
BsmI	GAATGC	1 cut(s)	95
BsnI	GGCC	2 cut(s)	153, 162
BsoBI	CYCGRG	1 cut(s)	84
Bsp1286I	GDGCHC	1 cut(s)	440
Bsp1407I	TGTACA	1 cut(s)	517
Bsp143I	GATC	1 cut(s)	198
BspANI	GGCC	2 cut(s)	153, 162
BspCNI	CTCAG	1 cut(s)	452
BspFNI	CGCG	4 cut(s)	63, 191, 204, 296
BspLI	GGNNCC	5 cut(s)	91, 200, 246, 330, 362
BspPI	GGATC	2 cut(s)	193, 206
BspT107I	GGYRCC	1 cut(s)	89
BsrFI	RCCGGY	1 cut(s)	71
BsrGI	TGTACA	1 cut(s)	517
BsrI	ACTGG	1 cut(s)	112
BssAI	RCCGGY	1 cut(s)	71
BssECI	CCNNGG	3 cut(s)	202, 433, 502
BssMI	GATC	1 cut(s)	198
BssNI	GRCGYC	3 cut(s)	90, 135, 338
BssT1I	CCWWGG	1 cut(s)	502
Bst2UI	CCWGG	2 cut(s)	107, 434
Bst6I	CTCTTC	1 cut(s)	29
BstACI	GRCGYC	3 cut(s)	90, 135, 338
BstAPI	GCANNNNNTGC	1 cut(s)	498
BstAUI	TGTACA	1 cut(s)	517
BstC8I	GCNNGC	1 cut(s)	73
BstDEI	CTNAG	1 cut(s)	439
BstDSI	CCRYGG	1 cut(s)	202
BstENI	CCTNNNNNAGG	2 cut(s)	84, 501
BstFNI	CGCG	4 cut(s)	63, 191, 204, 296
BstH2I	RGCGCY	1 cut(s)	93
BstHHI	GCGC	4 cut(s)	65, 92, 191, 298
BstKTI	GATC	1 cut(s)	201
BstMAI	GTCTC	1 cut(s)	285
BstMBI	GATC	1 cut(s)	198
BstMCI	CGRYCG	1 cut(s)	154
BstMWI	GCNNNNNNNGC	4 cut(s)	159, 210, 216, 498
BstNI	CCWGG	2 cut(s)	107, 434
BstSCI	CCNGG	2 cut(s)	105, 432
BstSFI	CTRYAG	1 cut(s)	375
BstUI	CGCG	4 cut(s)	63, 191, 204, 296
BstV1I	GCAGC	3 cut(s)	44, 222, 285
BstX2I	RGATCY	1 cut(s)	198
BstYI	RGATCY	1 cut(s)	198
BstZI	CGGCCG	1 cut(s)	151
BsuI	GTATCC	1 cut(s)	437
BsuRI	GGCC	2 cut(s)	153, 162
BtgI	CCRYGG	1 cut(s)	202
Cac8I	GCNNGC	1 cut(s)	73
CfoI	GCGC	4 cut(s)	65, 92, 191, 298
Cfr10I	RCCGGY	1 cut(s)	71
Cfr13I	GGNCC	1 cut(s)	109
Cfr42I	CCGCGG	1 cut(s)	205
CseI	GACGC	2 cut(s)	302, 346
Csp6I	GTAC	1 cut(s)	518
CviAII	CATG	2 cut(s)	310, 582
CviQI	GTAC	1 cut(s)	518
DdeI	CTNAG	1 cut(s)	439
DinI	GGCGCC	1 cut(s)	91
DpnI	GATC	1 cut(s)	200
DpnII	GATC	1 cut(s)	198
DrdI	GACNNNNNNGTC	1 cut(s)	377
DseDI	GACNNNNNNGTC	1 cut(s)	377
EaeI	YGGCCR	1 cut(s)	151
EagI	CGGCCG	1 cut(s)	151
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
EclXI	CGGCCG	1 cut(s)	151
Eco130I	CCWWGG	1 cut(s)	502
Eco24I	GRGCYC	1 cut(s)	440
Eco47I	GGWCC	1 cut(s)	109
Eco52I	CGGCCG	1 cut(s)	151
Eco88I	CYCGRG	1 cut(s)	84
EcoNI	CCTNNNNNAGG	2 cut(s)	84, 501
EcoRII	CCWGG	2 cut(s)	105, 432
EcoT14I	CCWWGG	1 cut(s)	502
EcoT22I	ATGCAT	1 cut(s)	494
EcoT38I	GRGCYC	1 cut(s)	440
EgeI	GGCGCC	1 cut(s)	91
EheI	GGCGCC	1 cut(s)	91
ErhI	CCWWGG	1 cut(s)	502
Esp3I	CGTCTC	1 cut(s)	285
FaeI	CATG	2 cut(s)	313, 585
FaiI	YATR	6 cut(s)	311, 405, 459, 494, 516, 583
FatI	CATG	2 cut(s)	309, 581
FblI	GTMKAC	1 cut(s)	282
FriOI	GRGCYC	1 cut(s)	440
FspBI	CTAG	2 cut(s)	18, 450
GlaI	GCGC	4 cut(s)	64, 91, 190, 297
HaeII	RGCGCY	1 cut(s)	93
HaeIII	GGCC	2 cut(s)	153, 162
HapII	CCGG	5 cut(s)	72, 216, 332, 341, 364
HgaI	GACGC	2 cut(s)	302, 346
HhaI	GCGC	4 cut(s)	65, 92, 191, 298
Hin1I	GRCGYC	3 cut(s)	90, 135, 338
Hin1II	CATG	2 cut(s)	313, 585
Hin6I	GCGC	4 cut(s)	63, 90, 189, 296
HinP1I	GCGC	4 cut(s)	63, 90, 189, 296
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HinfI	GANTC	2 cut(s)	156, 507
HpaII	CCGG	5 cut(s)	72, 216, 332, 341, 364
HphI	GGTGA	3 cut(s)	244, 346, 358
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188I	TCNGA	3 cut(s)	133, 198, 512
Hpy188III	TCNNGA	2 cut(s)	320, 441
Hpy8I	GTNNAC	1 cut(s)	283
Hpy99I	CGWCG	4 cut(s)	137, 140, 182, 287
HpyAV	CCTTC	2 cut(s)	235, 466
HpyCH4IV	ACGT	1 cut(s)	135
HpyCH4V	TGCA	3 cut(s)	390, 486, 492
HpyF10VI	GCNNNNNNNGC	4 cut(s)	159, 210, 216, 498
HpyF3I	CTNAG	1 cut(s)	439
HpySE526I	ACGT	1 cut(s)	135
Hsp92I	GRCGYC	3 cut(s)	90, 135, 338
Hsp92II	CATG	2 cut(s)	313, 585
HspAI	GCGC	4 cut(s)	63, 90, 189, 296
KasI	GGCGCC	1 cut(s)	89
KroI	GCCGGC	1 cut(s)	71
KroNI	GCCGGC	1 cut(s)	73
KspI	CCGCGG	1 cut(s)	205
Kzo9I	GATC	1 cut(s)	198
LmnI	GCTCC	4 cut(s)	218, 244, 334, 366
Lsp1109I	GCAGC	3 cut(s)	44, 222, 285
MaeI	CTAG	2 cut(s)	18, 450
MaeII	ACGT	1 cut(s)	135
MaeIII	GTNAC	3 cut(s)	232, 272, 334
MalI	GATC	1 cut(s)	200
MboI	GATC	1 cut(s)	198
MboII	GAAGA	3 cut(s)	16, 19, 569
MflI	RGATCY	1 cut(s)	198
MhlI	GDGCHC	1 cut(s)	440
Mly113I	GGCGCC	1 cut(s)	90
MmeI	TCCRAC	1 cut(s)	156
Mph1103I	ATGCAT	1 cut(s)	494
MreI	CGCCGGCG	1 cut(s)	71
MroNI	GCCGGC	1 cut(s)	71
MseI	TTAA	1 cut(s)	228
MspA1I	CMGCKG	3 cut(s)	57, 150, 204
MspI	CCGG	5 cut(s)	72, 216, 332, 341, 364
MspR9I	CCNGG	2 cut(s)	107, 434
Mva1269I	GAATGC	1 cut(s)	95
MvaI	CCWGG	2 cut(s)	107, 434
MvnI	CGCG	4 cut(s)	63, 191, 204, 296
MwoI	GCNNNNNNNGC	4 cut(s)	159, 210, 216, 498
NaeI	GCCGGC	1 cut(s)	73
NarI	GGCGCC	1 cut(s)	90
NdeII	GATC	1 cut(s)	198
NgoMIV	GCCGGC	1 cut(s)	71
NlaIII	CATG	2 cut(s)	313, 585
NlaIV	GGNNCC	5 cut(s)	91, 200, 246, 330, 362
NmuCI	GTSAC	2 cut(s)	232, 334
NsiI	ATGCAT	1 cut(s)	494
PaeR7I	CTCGAG	1 cut(s)	84
PcsI	WCGNNNNNNNCGW	2 cut(s)	129, 141
PctI	GAATGC	1 cut(s)	95
PdiI	GCCGGC	1 cut(s)	73
PfeI	GAWTC	2 cut(s)	156, 507
PluTI	GGCGCC	1 cut(s)	93
PsiI	TTATAA	1 cut(s)	459
Psp6I	CCWGG	2 cut(s)	105, 432
PspGI	CCWGG	2 cut(s)	105, 432
PspN4I	GGNNCC	5 cut(s)	91, 200, 246, 330, 362
PspPI	GGNCC	1 cut(s)	109
PspXI	VCTCGAGB	1 cut(s)	84
PsuI	RGATCY	1 cut(s)	198
RsaI	GTAC	1 cut(s)	519
RsaNI	GTAC	1 cut(s)	518
SacII	CCGCGG	1 cut(s)	205
SalI	GTCGAC	1 cut(s)	281
SaqAI	TTAA	1 cut(s)	228
Sau3AI	GATC	1 cut(s)	198
Sau96I	GGNCC	1 cut(s)	109
ScrFI	CCNGG	2 cut(s)	107, 434
SduI	GDGCHC	1 cut(s)	440
SetI	ASST	5 cut(s)	138, 215, 234, 348, 499
SfcI	CTRYAG	1 cut(s)	375
SfiI	GGCCNNNNNGGCC	1 cut(s)	159
SfoI	GGCGCC	1 cut(s)	91
Sfr274I	CTCGAG	1 cut(s)	84
Sfr303I	CCGCGG	1 cut(s)	205
SgrAI	CRCCGGYG	1 cut(s)	71
SgrBI	CCGCGG	1 cut(s)	205
SinI	GGWCC	1 cut(s)	109
SlaI	CTCGAG	1 cut(s)	84
SmlI	CTYRAG	1 cut(s)	84
SmoI	CTYRAG	1 cut(s)	84
SspDI	GGCGCC	1 cut(s)	89
SspMI	CTAG	2 cut(s)	18, 450
StyD4I	CCNGG	2 cut(s)	105, 432
StyI	CCWWGG	1 cut(s)	502
TaiI	ACGT	1 cut(s)	138
TaqI	TCGA	4 cut(s)	85, 257, 282, 381
TatI	WGTACW	1 cut(s)	517
TfiI	GAWTC	2 cut(s)	156, 507
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TseFI	GTSAC	2 cut(s)	232, 334
TseI	GCWGC	3 cut(s)	57, 210, 298
Tsp45I	GTSAC	2 cut(s)	232, 334
TspDTI	ATGAA	1 cut(s)	420
TspGWI	ACGGA	2 cut(s)	133, 585
VpaK11BI	GGWCC	1 cut(s)	109
XagI	CCTNNNNNAGG	2 cut(s)	84, 501
XhoI	CTCGAG	1 cut(s)	84
XmiI	GTMKAC	1 cut(s)	282
XspI	CTAG	2 cut(s)	18, 450
ZraI	GACGTC	1 cut(s)	136
Zsp2I	ATGCAT	1 cut(s)	494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.