Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0008178

Physical Location & Seq

Genomic Coordinates Forward (+)

11691360 .. 11693255

Gene Structure 1896 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG145600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGATGTCGTTACCGGTGGCCAAACCCTCTTGGCACAAATCGAACCTTCAATTTCCAGCACCAACGGGACCAATAGGGAGGTCATCAGGCTTAAAGTGGAGGGTCCAGAGATCAGAATCGGAGCTCTGGTCTACTGCGGAGGTGGAATCTGCTTTGGTAGGGAGCAGCGGAGGAGCTTTGGTCAGGAAGGACTTGGTATTCGAGCCTTTACCAGAGGACTCCAAGAGTTTCTGCTGCCAGAAGCTTCTCGAATTCATTGATTCTCTTGGTAATTGTCGAGCTATTCTTGTTTCAGTTTCATTTAGCTTAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0000325 GO:0001101 GO:0001558 GO:0001727 GO:0001932 GO:0001934 GO:0001959 GO:0003376 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004888 GO:0004930 GO:0005488 GO:0005515 GO:0005516 GO:0005524 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0006066 GO:0006355 GO:0006457 GO:0006629 GO:0006643 GO:0006665 GO:0006670 GO:0006793 GO:0006796 GO:0006807 GO:0006937 GO:0006940 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0007346 GO:0008144 GO:0008150 GO:0008152 GO:0008284 GO:0008289 GO:0008481 GO:0008610 GO:0009056 GO:0009058 GO:0009705 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009845 GO:0009889 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0010799 GO:0010800 GO:0010803 GO:0010941 GO:0016020 GO:0016042 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017050 GO:0017076 GO:0019219 GO:0019220 GO:0019222 GO:0019722 GO:0019751 GO:0019899 GO:0019902 GO:0019903 GO:0019932 GO:0022603 GO:0023051 GO:0023052 GO:0023056 GO:0030148 GO:0030149 GO:0030258 GO:0030307 GO:0030334 GO:0030335 GO:0030554 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032870 GO:0032879 GO:0033993 GO:0034311 GO:0034312 GO:0034641 GO:0035556 GO:0035639 GO:0036094 GO:0038023 GO:0038036 GO:0040008 GO:0040012 GO:0040017 GO:0042127 GO:0042221 GO:0042325 GO:0042327 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044057 GO:0044093 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045125 GO:0045765 GO:0045766 GO:0045787 GO:0045927 GO:0045931 GO:0045933 GO:0045937 GO:0045987 GO:0046165 GO:0046173 GO:0046466 GO:0046467 GO:0046512 GO:0046519 GO:0046520 GO:0046521 GO:0046834 GO:0046872 GO:0048145 GO:0048146 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051090 GO:0051091 GO:0051092 GO:0051094 GO:0051128 GO:0051171 GO:0051173 GO:0051174 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051270 GO:0051272 GO:0051716 GO:0051721 GO:0051726 GO:0060089 GO:0060255 GO:0060548 GO:0060759 GO:0065007 GO:0065009 GO:0070300 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0080090 GO:0090257 GO:0090351 GO:0090520 GO:0097159 GO:0097164 GO:0097305 GO:0097306 GO:0097367 GO:0098588 GO:0098805 GO:1901222 GO:1901224 GO:1901265 GO:1901342 GO:1901363 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902531 GO:1902533 GO:1903320 GO:1903322 GO:1903506 GO:1904018 GO:2000026 GO:2000112 GO:2000145 GO:2000147 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 ko04020 ko04071 ko04072 ko04370 ko04371 ko04666 ko05152 map00600 map01100 map04020 map04071 map04072 map04370 map04371 map04666 map05152

Pfam Domains

Protein Families

DAGK_cat

Protein Analysis

104

Amino Acids

11.31

Weight (kDa)

7.72

Isoelectric Point (pI)

61.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008178)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0147181
rosa_laevigata	RLG00000009283 RLG00000009752
rosa_roxburghii	Rroxscaffold_4G00314460
rosa_rugosa	Rorug02G0025400 Rorug06G0087700
rosa_samantha	Rh1CG328700 Rh2CG237800 Rh2DG241000 Rh2DG693200 Rh3DG361200 Rh4AG247200 Rh4AG247900 Rh4CG260600 Rh4DG044600 Rh4DG247900 Rh5AG399200 Rh5BG270900 Rh6AG169600 Rh6AG189100 Rh6BG136000 Rh6BG192300 Rh7AG145600 Rh7CG149600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	131
AciI	CCGC	2 cut(s)	137, 168
AcoI	YGGCCR	1 cut(s)	18
AcsI	RAATTY	1 cut(s)	251
AflII	CTTAAG	1 cut(s)	307
AgeI	ACCGGT	1 cut(s)	13
AgsI	TTSAA	1 cut(s)	50
AluBI	AGCT	6 cut(s)	124, 176, 244, 281, 306, 312
AluI	AGCT	6 cut(s)	124, 176, 244, 281, 306, 312
Alw21I	GWGCWC	1 cut(s)	126
AoxI	GGCC	1 cut(s)	18
ApeKI	GCWGC	2 cut(s)	165, 234
ApoI	RAATTY	1 cut(s)	251
ArsI	GACNNNNNNTTYG	2 cut(s)	182, 214
AsiGI	ACCGGT	1 cut(s)	13
AspS9I	GGNCC	2 cut(s)	68, 103
AvaII	GGWCC	2 cut(s)	68, 103
BalI	TGGCCA	1 cut(s)	20
BanII	GRGCYC	1 cut(s)	126
Bbv12I	GWGCWC	1 cut(s)	126
BbvI	GCAGC	2 cut(s)	177, 221
BfrI	CTTAAG	1 cut(s)	307
BisI	GCNGC	2 cut(s)	166, 235
BlsI	GCNGC	2 cut(s)	167, 236
Bme18I	GGWCC	2 cut(s)	68, 103
BmgT120I	GGNCC	2 cut(s)	68, 103
BmiI	GGNNCC	2 cut(s)	69, 104
BsaBI	GATNNNNATC	1 cut(s)	115
BsaWI	WCCGGW	1 cut(s)	13
BsaXI	ACNNNNNCTCC	4 cut(s)	113, 143, 165, 195
Bse118I	RCCGGY	1 cut(s)	13
Bse8I	GATNNNNATC	1 cut(s)	115
BseJI	GATNNNNATC	1 cut(s)	115
BseRI	GAGGAG	1 cut(s)	186
BseXI	GCAGC	2 cut(s)	177, 221
BshFI	GGCC	1 cut(s)	20
BshTI	ACCGGT	1 cut(s)	13
BsiHKAI	GWGCWC	1 cut(s)	126
BsiSI	CCGG	1 cut(s)	14
BslFI	GGGAC	1 cut(s)	81
BsmFI	GGGAC	1 cut(s)	81
BsnI	GGCC	1 cut(s)	20
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp143I	GATC	1 cut(s)	110
BspACI	CCGC	2 cut(s)	137, 168
BspANI	GGCC	1 cut(s)	20
BspLI	GGNNCC	2 cut(s)	69, 104
BspTI	CTTAAG	1 cut(s)	307
BsrFI	RCCGGY	1 cut(s)	13
BssAI	RCCGGY	1 cut(s)	13
BssMI	GATC	1 cut(s)	110
BstAFI	CTTAAG	1 cut(s)	307
BstKTI	GATC	1 cut(s)	113
BstMBI	GATC	1 cut(s)	110
BstV1I	GCAGC	2 cut(s)	177, 221
BsuRI	GGCC	1 cut(s)	20
Cfr10I	RCCGGY	1 cut(s)	13
Cfr13I	GGNCC	2 cut(s)	68, 103
CspAI	ACCGGT	1 cut(s)	13
CviJI	RGCY	9 cut(s)	20, 90, 124, 176, 205, 244, 281, 306, 312
CviKI_1	RGCY	9 cut(s)	20, 90, 124, 176, 205, 244, 281, 306, 312
DpnI	GATC	1 cut(s)	112
DpnII	GATC	1 cut(s)	110
EaeI	YGGCCR	1 cut(s)	18
Ecl136II	GAGCTC	1 cut(s)	124
Eco24I	GRGCYC	1 cut(s)	126
Eco47I	GGWCC	2 cut(s)	68, 103
Eco53kI	GAGCTC	1 cut(s)	124
EcoICRI	GAGCTC	1 cut(s)	124
EcoRI	GAATTC	1 cut(s)	251
EcoT38I	GRGCYC	1 cut(s)	126
FaqI	GGGAC	1 cut(s)	81
FblI	GTMKAC	1 cut(s)	131
Fnu4HI	GCNGC	2 cut(s)	166, 235
FriOI	GRGCYC	1 cut(s)	126
Fsp4HI	GCNGC	2 cut(s)	166, 235
GluI	GCNGC	2 cut(s)	166, 235
HaeIII	GGCC	1 cut(s)	20
HapII	CCGG	1 cut(s)	14
HindIII	AAGCTT	1 cut(s)	242
HinfI	GANTC	4 cut(s)	116, 146, 218, 260
HpaII	CCGG	1 cut(s)	14
Hpy166II	GTNNAC	1 cut(s)	132
Hpy188I	TCNGA	2 cut(s)	115, 121
Hpy188III	TCNNGA	3 cut(s)	106, 184, 248
Hpy8I	GTNNAC	1 cut(s)	132
HpyAV	CCTTC	2 cut(s)	56, 181
Kzo9I	GATC	1 cut(s)	110
LmnI	GCTCC	3 cut(s)	121, 162, 173
LpnPI	CCDG	8 cut(s)	27, 69, 72, 112, 119, 169, 225, 251
Lsp1109I	GCAGC	2 cut(s)	177, 221
MaeIII	GTNAC	1 cut(s)	9
MalI	GATC	1 cut(s)	112
MboI	GATC	1 cut(s)	110
MhlI	GDGCHC	1 cut(s)	126
MlsI	TGGCCA	1 cut(s)	20
MluCI	AATT	3 cut(s)	50, 251, 271
MluNI	TGGCCA	1 cut(s)	20
MlyI	GAGTC	1 cut(s)	212
MnlI	CCTC	6 cut(s)	37, 72, 93, 133, 164, 208
Mox20I	TGGCCA	1 cut(s)	20
MscI	TGGCCA	1 cut(s)	20
MseI	TTAA	2 cut(s)	92, 308
Msp20I	TGGCCA	1 cut(s)	20
MspA1I	CMGCKG	1 cut(s)	168
MspCI	CTTAAG	1 cut(s)	307
MspI	CCGG	1 cut(s)	14
NdeII	GATC	1 cut(s)	110
NlaIV	GGNNCC	2 cut(s)	69, 104
PfeI	GAWTC	3 cut(s)	116, 146, 260
PinAI	ACCGGT	1 cut(s)	13
PkrI	GCNGC	2 cut(s)	167, 236
PleI	GAGTC	1 cut(s)	212
PpsI	GAGTC	1 cut(s)	212
Psp124BI	GAGCTC	1 cut(s)	126
PspN4I	GGNNCC	2 cut(s)	69, 104
PspPI	GGNCC	2 cut(s)	68, 103
SacI	GAGCTC	1 cut(s)	126
SaqAI	TTAA	2 cut(s)	92, 308
SatI	GCNGC	2 cut(s)	166, 235
Sau3AI	GATC	1 cut(s)	110
Sau96I	GGNCC	2 cut(s)	68, 103
SchI	GAGTC	1 cut(s)	212
SduI	GDGCHC	1 cut(s)	126
SetI	ASST	9 cut(s)	48, 83, 126, 144, 178, 246, 283, 308, 314
SinI	GGWCC	2 cut(s)	68, 103
SmlI	CTYRAG	1 cut(s)	307
SmoI	CTYRAG	1 cut(s)	307
Sse9I	AATT	3 cut(s)	50, 251, 271
SsiI	CCGC	2 cut(s)	137, 168
SstI	GAGCTC	1 cut(s)	126
TaqI	TCGA	4 cut(s)	41, 201, 249, 277
TasI	AATT	3 cut(s)	50, 251, 271
TfiI	GAWTC	3 cut(s)	116, 146, 260
Tru1I	TTAA	2 cut(s)	92, 308
Tru9I	TTAA	2 cut(s)	92, 308
TseI	GCWGC	2 cut(s)	165, 234
TspDTI	ATGAA	2 cut(s)	244, 288
Vha464I	CTTAAG	1 cut(s)	307
VpaK11BI	GGWCC	2 cut(s)	68, 103
XapI	RAATTY	1 cut(s)	251
XmiI	GTMKAC	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.